Wagenaar, Daniel

Combined from CaltechAUTHORS

• Nichols, Aaron L. and Marotta, Christopher B., el al. (2026) Hydrogel Encapsulation of a Designed Fluorescent Protein Biosensor for Continuous Measurements of Sub-100 nM Nicotine; ACS Applied Bio Materials; Vol. 9; No. 2; 765-774; 10.1021/acsabm.5c01418
• Trautmann, Eric M. and Hesse, Janis K., el al. (2025) Large-scale high-density brain-wide neural recording in nonhuman primates; Nature Neuroscience; Vol. 28; No. 7; 1562-1575; PMCID PMC12229894; 10.1038/s41593-025-01976-5
• Nichols, Aaron L. and Marotta, Christopher B., el al. (2024) Hydrogel encapsulation of a designed fluorescent protein biosensor for continuous measurements of sub-100 nanomolar nicotine; 10.1101/2024.12.02.625538
• Kahan, Anat and Greenbaum, Alon, el al. (2021) Light-guided sectioning for precise in situ localization and tissue interface analysis for brain-implanted optical fibers and GRIN lenses; Cell Reports; Vol. 36; No. 13; Art. No. 109744; PMCID PMC8552649; 10.1016/j.celrep.2021.109744
• Andreev, Andrey and Vasnarungruengkul, Pavee, el al. (2021) Open-Source Thermometer, Temperature Controller, and Light Meter for Use in Animal Facilities and During Experiments; 10.1101/2021.05.18.444705
• Cho, Jounhong Ryan and Chen, Xinhong, el al. (2021) Dorsal Raphe Dopamine Neurons Signal Motivational Salience Dependent on Internal State, Expectation, and Behavioral Context; Journal of Neuroscience; Vol. 41; No. 12; 2645-2655; PMCID PMC8018733; 10.1523/JNEUROSCI.2690-20.2021
• Ashaber, Mária and Tomina, Yusuke, el al. (2021) Anatomy and activity patterns in a multifunctional motor neuron and its surrounding circuits; eLife; Vol. 10; Art. No. e61881; 10.7554/eLife.61881
• Kennedy, Ann and Kunwar, Prabhat S., el al. (2020) Stimulus-specific hypothalamic encoding of a persistent defensive state; Nature; Vol. 586; No. 7831; 730-734; PMCID PMC7606611; 10.1038/s41586-020-2728-4
• He, Yun and Shi, Junhui, el al. (2020) Label-free imaging of lipid-rich biological tissues by mid-infrared photoacoustic microscopy; Journal of Biomedical Optics; Vol. 25; No. 10; Art. No. 106506; 10.1117/1.jbo.25.10.106506
• Stowasser, Annette and Stahl, Aaron, el al. (2019) Electrophysiology and transcriptomics reveal two photoreceptor classes and complex visual integration in Hirudo verbana; Journal of Experimental Biology; Vol. 222; No. 15; Art. No. jeb201764; PMCID PMC6703701; 10.1242/jeb.201764
• Arbabi, Ehsan and Li, Jiaqi, el al. (2019) Double-wavelength metasurface objective lens for two-photon microscopy (Conference Presentation); ISBN 9781510624986; High Contrast Metastructures VIII; Art. No. 109280K; 10.1117/12.2510596
• Arbabi, Ehsan and Li, Jiaqi, el al. (2018) Two-photon microscopy with a double-wavelength metasurface objective lens; Nano Letters; Vol. 18; No. 8; 4943-4948; 10.1021/acs.nanolett.8b01737
• Tomina, Yusuke and Wagenaar, Daniel (2018) Dual-sided Voltage-sensitive Dye Imaging of Leech Ganglia; Bio-protocol; Vol. 8; No. 5; Art. No. e2751; PMCID PMC5867905; 10.21769/BioProtoc.2751
• Lehmkuhl, Andrew M. and Muthusamy, Arunkumar, el al. (2018) Responses to mechanically and visually cued water waves in the nervous system of the medicinal leech; Journal of Experimental Biology; Vol. 221; No. 4; Art. No. jeb171728; PMCID PMC5868928; 10.1242/jeb.171728
• Tomina, Yusuke and Wagenaar, Daniel A. (2017) A double-sided microscope to realize whole-ganglion imaging of membrane potential in the medicinal leech; eLife; Vol. 6; Art. No. e29839; PMCID PMC5656430; 10.7554/eLife.29839
• Tomina, Yusuke and Wagenaar, Daniel A. (2017) Whole-ganglion imaging of voltage in the medicinal leech using a double-sided microscope; 10.1101/145144
• Nagarah, John M. and Stowasser, Annette, el al. (2015) Optically transparent multi-suction electrode arrays; Frontiers in Neuroscience; Vol. 9; Art. No. 384; PMCID PMC4611137; 10.3389/fnins.2015.00384
• Baljon, Pieter Laurens and Wagenaar, Daniel A. (2015) Responses to Conflicting Stimuli in a Simple Stimulus–Response Pathway; Journal of Neuroscience; Vol. 35; No. 6; 2398-2406; PMCID PMC4323524; 10.1523/JNEUROSCI.3823-14.2015
• Romanenko, Sergii and Siegel, Peter H., el al. (2014) Effects of millimeter wave irradiation and equivalent thermal heating on the activity of individual neurons in the leech ganglion; Journal of Neurophysiology; Vol. 112; No. 10; 2423-2431; PMCID PMC4233276; 10.1152/jn.00357.2014
• Nagarah, John M. and Wagenaar, Daniel A. (2014) Transparent Multi-Suction Electrode Arrays for in vitro Neural Network Investigations; Biophysical Journal; Vol. 106; No. 2; 417A; 10.1016/j.bpj.2013.11.2346
• Harley, Cynthia M. and Rossi, Matthew, el al. (2013) Discontinuous locomotion and prey sensing in the leech; Journal of Experimental Biology; Vol. 216; No. 10; 1890-1897; 10.1242/jeb.075911
• Romanenko, Sergii and Siegel, Peter H., el al. (2013) Comparison of the effects of millimeter wave irradiation, general bath heating, and localized heating on neuronal activity in the leech ganglion; ISBN 978-0-8194-9354-5; Terahertz and Ultrashort Electromagnetic Pulses for Biomedical Applications; Art. No. 85850N; 10.1117/12.2006504
• Nagarah, John M. and Wagenaar, Daniel A. (2012) Ultradeep fused silica glass etching with an HF-resistant photosensitive resist for optical imaging applications; Journal of Micromechanics and Microengineering; Vol. 22; No. 3; Art. No. 035011; 10.1088/0960-1317/22/3/035011
• Wagenaar, Daniel A. (2012) An Optically Stabilized Fast-Switching Light Emitting Diode as a Light Source for Functional Neuroimaging; PLoS ONE; Vol. 7; No. 1; Art. No. e29822; PMCID PMC3253093; 10.1371/journal.pone.0029822
• Harley, Cynthia M. and Cienfuegos, Javier, el al. (2011) Developmentally regulated multisensory integration for prey localization in the medicinal leech; Journal of Experimental Biology; Vol. 214; No. 22; 3801-3807; 10.1242/jeb.059618
• Wagenaar, Daniel A. and Gonzalez, Ruben, el al. (2010) Alpha-conotoxin ImI disrupts central control of swimming in the medicinal leech; Neuroscience Letters; Vol. 485; No. 3; 151-156; PMCID PMC2956871; 10.1016/j.neulet.2010.08.078
• Wagenaar, Daniel A. and Hamilton, M. Sarhas, el al. (2010) A Hormone-Activated Central Pattern Generator for Courtship; Current Biology; Vol. 20; No. 6; 487-495; PMCID PMC2858972; 10.1016/j.cub.2010.02.027
• Wagenaar, Daniel A. and Kristan, Wiliam B., Jr. (2010) Automated Video Analysis of Animal Movements Using Gabor Orientation Filters; Neuroinformatics; Vol. 8; No. 1; 33-42; PMCID PMC2841272; 10.1007/s12021-010-9062-1
• Wagenaar, Daniel A. and Pine, Jerome, el al. (2006) Searching for plasticity in dissociated cortical cultures on multi-electrode arrays; Journal of Negative Results in BioMedicine; Vol. 5; Art. No. 16; PMCID PMC1800351; 10.1186/1477-5751-5-16
• Wagenaar, Daniel A. and Nádasdy, Zoltan, el al. (2006) Persistent dynamic attractors in activity patterns of cultured neuronal networks; Physical Review E; Vol. 73; No. 5; Art. No. 051907; PMCID PMC2570189; 10.1103/PhysRevE.73.051907
• Wagenaar, Daniel A. and Pine, Jerome, el al. (2006) An extremely rich repertoire of bursting patterns during the development of cortical cultures; BMC Neuroscience; Vol. 7; Art. No. 11; PMCID PMC1420316; 10.1186/1471-2202-7-11
• Fonck, Carlos and Cohen, Bruce N., el al. (2005) Novel Seizure Phenotype and Sleep Disruptions in Knock-In Mice with Hypersensitive α4* Nicotinic Receptors; Journal of Neuroscience; Vol. 25; No. 49; 11396-11411; PMCID PMC6725918; 10.1523/jneurosci.3597-05.2005
• Chao, Zenas C. and Bakkum, Douglas J., el al. (2005) Effects of Random External Background Stimulation on Network Synaptic Stability After Tetanization: A Modeling Study; Neuroinformatics; Vol. 3; No. 3; 263-280; PMCID PMC2584804; 10.1385/ni:3:3:263
• Wagenaar, Daniel and DeMarse, Thomas B., el al. (2005) MeaBench: A toolset for multi-electrode data acquisition and on-line analysis; ISBN 0-7803-8709-0; Proceedings of the 2nd International IEEE EBMS Conference on Neural Engineering; 518-521; 10.1109/CNE.2005.1419673
• Wagenaar, Daniel A. and Potter, Steve M. (2004) A versatile all-channel stimulator for electrode arrays, with real-time control; Journal of Neural Engineering; Vol. 1; No. 1; 39-45; PMCID PMC2570177; 10.1088/1741-2560/1/1/006
• Wagenaar, Daniel A. and Adami, Christoph (2004) Influence of chance, history, and adaptation on digital evolution; Artificial Life; Vol. 10; No. 2; 181-190; 10.1162/106454604773563603
• Potter, Steven M. and Wagenaar, Daniel A., el al. (2003) Long-Term Bidirectional Neuron Interfaces for Robotic Control, and In Vitro Learning Studies; ISBN 0-7803-7789-3; Proceedings of the 25th Annual International Conference of the IEEE Engineering in Medicine and Biology Society; 3690-3693; 10.1109/IEMBS.2003.1280959
• DeMarse, Thomas B. and Wagenaar, Daniel A., el al. (2001) The Neurally Controlled Animat: Biological Brains Acting with Simulated Bodies; Autonomous Robots; Vol. 11; No. 3; 305-310; PMCID PMC2440704; 10.1023/A:1012407611130