(orcid 0000-0002-0291-4215)
Xiong, Lealia L.; Garrett, Michael A. et al. (2023) Self-regulating living material with temperature-dependent light absorption https://doi.org/10.1101/2023.03.11.532239
Liang, William; Guo, Hongsun et al. (2023) Auditory Mondrian masks the airborne-auditory artifact of focused ultrasound stimulation in humans Brain Stimulation; Vol. 16; No. 2; https://doi.org/10.1016/j.brs.2023.03.002
Sharma, Saransh; Ramadi, Khalil B. et al. (2023) Location-aware ingestible microdevices for wireless monitoring of gastrointestinal dynamics Nature Electronics; Vol. 6; No. 3; https://doi.org/10.1038/s41928-023-00916-0 (In Press)
Wu, Di; Baresch, Diego et al. (2023) Biomolecular actuators for genetically selective acoustic manipulation of cells Science Advances; Vol. 9; No. 8; https://doi.org/10.1126/sciadv.add9186
Hurt, Robert C.; Buss, Marjorie T. et al. (2023) Genomically mined acoustic reporter genes for real-time in vivo monitoring of tumors and tumor-homing bacteria Nature Biotechnology; https://doi.org/10.1038/s41587-022-01581-y (In Press)
Anthis, Alexandre H. C.; Abundo, Maria Paulene et al. (2022) Modular stimuli-responsive hydrogel sealants for early gastrointestinal leak detection and containment Nature Communications; Vol. 13; https://doi.org/10.1038/s41467-022-34272-y
Griggs, Whitney S.; Norman, Sumner L. et al. (2022) Decoding Motor Plans Using a Closed-Loop Ultrasonic Brain-Machine Interface https://doi.org/10.1101/2022.11.10.515371
Salahshoor, Hossein; Yao, Yuxing et al. (2022) Geometric effects in gas vesicle buckling under ultrasound Biophysical Journal; Vol. 121; No. 21; https://doi.org/10.1016/j.bpj.2022.09.004
Xiong, Lealia L.; Garrett, Michael A. et al. (2022) Tunable Temperature-Sensitive Transcriptional Activation Based on Lambda Repressor ACS Synthetic Biology; Vol. 11; No. 7; https://doi.org/10.1021/acssynbio.2c00093
Salahshoor, Hossein; Yao, Yuxing et al. (2022) Geometric effects in gas vesicle buckling under ultrasound https://doi.org/10.1101/2022.06.27.497663
Dutka, Przemysław; Metskas, Lauren Ann et al. (2022) Structure of Anabaena flos-aquae gas vesicles revealed by cryo-ET https://doi.org/10.1101/2022.06.21.496981
Kim, Whee-Soo; Min, Sungjin et al. (2022) Magneto-acoustic protein nanostructures for non-invasive imaging of tissue mechanics in vivo https://doi.org/10.1101/2022.05.26.493158
Abedi, Mohamad H.; Yao, Michael S. et al. (2022) Ultrasound-controllable engineered bacteria for cancer immunotherapy Nature Communications; Vol. 13; https://doi.org/10.1038/s41467-022-29065-2
Needham, Brittany D.; Funabashi, Masanori et al. (2022) A gut-derived metabolite alters brain activity and anxiety behaviour in mice Nature; Vol. 602; No. 7899; https://doi.org/10.1038/s41586-022-04396-8
Anthis, Alexandre H. C.; Abundo, Maria Paulene et al. (2022) Smart sealants for prevention and monitoring of gastrointestinal anastomotic leaks using portable smartphone-controlled ultrasound transducers https://doi.org/10.1101/2022.01.24.477460
Yoo, Sangjin; Mittelstein, David R. et al. (2022) Focused ultrasound excites cortical neurons via mechanosensitive calcium accumulation and ion channel amplification Nature Communications; Vol. 13; https://doi.org/10.1038/s41467-022-28040-1
Salahshoor, Hossein; Guo, Hongsun et al. (2022) Mechanics of ultrasonic neuromodulation in a mouse subject Extreme Mechanics Letters; Vol. 50; https://doi.org/10.1016/j.eml.2021.101539
Bar-Zion, Avinoam; Nourmahnad, Atousa et al. (2021) Acoustically triggered mechanotherapy using genetically encoded gas vesicles Nature Nanotechnology; Vol. 16; No. 12; https://doi.org/10.1038/s41565-021-00971-8
Bar-Zion, Avinoam; Solomon, Oren et al. (2021) Doppler Slicing for Ultrasound Super-Resolution Without Contrast Agents https://doi.org/10.1101/2021.11.19.469083
Hurt, Robert C.; Wong, Katie et al. (2021) Directed evolution of a genetically encoded contrast agent for ultrasound In: 262nd ACS National Meeting & Exposition, 22-26 August 2021, Atlanta, GA https://resolver.caltech.edu/CaltechAUTHORS:20211216-235830370
Xiong, Lealia; Garrett, Michael A. et al. (2021) Toward a thermally self-regulating living material In: 262nd ACS National Meeting & Exposition, 22-26 August 2021, Atlanta, GA https://resolver.caltech.edu/CaltechAUTHORS:20211216-234818185
Sawyer, Daniel P.; Bar-Zion, Avinoam et al. (2021) Ultrasensitive ultrasound imaging of gene expression with signal unmixing Nature Methods; Vol. 18; No. 8; https://doi.org/10.1038/s41592-021-01229-w
Sharma, Saransh; Telikicherla, Aditya et al. (2021) Wireless 3D Surgical Navigation and Tracking System With 100μm Accuracy Using Magnetic-Field Gradient-Based Localization IEEE Transactions on Medical Imaging; Vol. 40; No. 8; https://doi.org/10.1109/tmi.2021.3071120
Li, Hongyi; Heath, John E et al. (2021) Engineering Viral Vectors for Acoustically Targeted Gene Delivery https://doi.org/10.1101/2021.07.26.453904
Yao, Yuxing; Jin, Zhiyang et al. (2021) Self-assembly of protein superstructures by physical interactions under cytoplasm-like conditions Biophysical Journal; Vol. 120; No. 13; https://doi.org/10.1016/j.bpj.2021.05.007
Rabut, Claire; Wu, Di et al. (2021) Ultrafast amplitude modulation for molecular and hemodynamic ultrasound imaging Applied Physics Letters; Vol. 118; No. 24; https://doi.org/10.1063/5.0050807
Norman, Sumner L.; Maresca, David et al. (2021) Single-trial decoding of movement intentions using functional ultrasound neuroimaging Neuron; Vol. 109; No. 9; https://doi.org/10.1016/j.neuron.2021.03.003
Farhadi, Arash; Sigmund, Felix et al. (2021) Genetically encodable materials for non-invasive biological imaging Nature Materials; Vol. 20; No. 5; https://doi.org/10.1038/s41563-020-00883-3
Dutka, Przemysław; Malounda, Dina et al. (2021) Measuring gas vesicle dimensions by electron microscopy Protein Science; Vol. 30; No. 5; https://doi.org/10.1002/pro.4056
Buss, Marjorie T.; Ramesh, Pradeep et al. (2021) Biomagnetic Materials: Spatial Control of Probiotic Bacteria in the Gastrointestinal Tract Assisted by Magnetic Particles (Adv. Mater. 17/2021) Advanced Materials; Vol. 33; No. 17; https://doi.org/10.1002/adma.202170134
Hurt, Robert C.; Buss, Marjorie T. et al. (2021) Genomically Mined Acoustic Reporter Genes Enable In Vivo Monitoring of Tumors and Tumor-Homing Bacteria https://doi.org/10.1101/2021.04.26.441537
Buss, Marjorie T.; Ramesh, Pradeep et al. (2021) Spatial Control of Probiotic Bacteria in the Gastrointestinal Tract Assisted by Magnetic Particles Advanced Materials; Vol. 33; No. 17; https://doi.org/10.1002/adma.202007473
Farhadi, Arash; Bedrossian, Manuel et al. (2020) Genetically Encoded Phase Contrast Agents for Digital Holographic Microscopy Nano Letters; Vol. 20; No. 11; https://doi.org/10.1021/acs.nanolett.0c03159
Rabut, Claire; Yoo, Sangjin et al. (2020) Ultrasound Technologies for Imaging and Modulating Neural Activity Neuron; Vol. 108; No. 1; https://doi.org/10.1016/j.neuron.2020.09.003
Ling, Bill; Lee, Justin et al. (2020) Biomolecular Ultrasound Imaging of Phagolysosomal Function ACS Nano; Vol. 14; No. 9; https://doi.org/10.1021/acsnano.0c05912
Lakshmanan, Anupama; Jin, Zhiyang et al. (2020) Acoustic biosensors for ultrasound imaging of enzyme activity Nature Chemical Biology; Vol. 16; No. 9; https://doi.org/10.1038/s41589-020-0591-0
Abedi, Mohamad H.; Lee, Justin et al. (2020) Thermal Control of Engineered T-cells ACS Synthetic Biology; Vol. 9; No. 8; https://doi.org/10.1021/acssynbio.0c00238
Lu, George J.; Chou, Li-dek et al. (2020) Genetically Encodable Contrast Agents for Optical Coherence Tomography ACS Nano; Vol. 14; No. 7; https://doi.org/10.1021/acsnano.9b08432
Salahshoor, Hossein; Shapiro, Mikhail G. et al. (2020) Transcranial Focused Ultrasound Generates Skull-Conducted Shear Waves: Computational Model and Implications for Neuromodulation Applied Physics Letters; Vol. 117; No. 3; https://doi.org/10.1063/5.0011837
Szablowski, Jerzy; Lee-Gosselin, Audrey et al. (2020) Acoustically Targeted Chemogenetics for Noninvasive Control of Neural Circuits Biological Psychiatry; Vol. 87; No. 9; In: 75th Annual Scientific Convention and Meeting of the Society of Biological Psychiatry, 30 April-2 May 2020, New York, NY https://doi.org/10.1016/j.biopsych.2020.02.263
Maresca, David; Payen, Thomas et al. (2020) Acoustic biomolecules enhance hemodynamic functional ultrasound imaging of neural activity NeuroImage; Vol. 209; https://doi.org/10.1016/j.neuroimage.2019.116467
Schibber, E. F.; Mittelstein, D. R. et al. (2020) A dynamical model of oncotripsy by mechanical cell fatigue: selective cancer cell ablation by low-intensity pulsed ultrasound Proceedings of the Royal Society A: Mathematical, physical, and engineering sciences; Vol. 476; No. 2236; https://doi.org/10.1098/rspa.2019.0692
Davis, Hunter C.; Kang, Sunghwi et al. (2020) Nanoscale Heat Transfer from Magnetic Nanoparticles and Ferritin in an Alternating Magnetic Field Biophysical Journal; Vol. 118; No. 6; https://doi.org/10.1016/j.bpj.2020.01.028
Zhang, Shuai; Huang, An et al. (2020) The Vibration Behavior of Sub-Micrometer Gas Vesicles in Response to Acoustic Excitation Determined via Laser Doppler Vibrometry Advanced Functional Materials; Vol. 30; No. 13; https://doi.org/10.1002/adfm.202000239
Sharma, Saransh; Ding, Grace et al. (2020) 3D Surgical Alignment with 100µm Resolution Using Magnetic-Field Gradient-Based Localization In: 2020 IEEE International Solid-State Circuits Conference; In: 2020 IEEE International Solid-State Circuits Conference (ISSCC), 16-20 February 2020, San Francisco, CA https://doi.org/10.1109/isscc19947.2020.9063108
Mittelstein, David R.; Ye, Jian et al. (2020) Selective Ablation of Cancer Cells with Low Intensity Pulsed Ultrasound Applied Physics Letters; Vol. 116; No. 1; https://doi.org/10.1063/1.5128627
Piraner, Dan I.; Wu, Yan et al. (2019) Modular Thermal Control of Protein Dimerization ACS Synthetic Biology; Vol. 8; No. 10; https://doi.org/10.1021/acssynbio.9b00275
Farhadi, Arash; Ho, Gabrielle H. et al. (2019) Ultrasound Imaging of Gene Expression in Mammalian Cells Science; Vol. 365; No. 6460; https://doi.org/10.1126/science.aax4804
Szablowski, Jerzy O.; Bar-Zion, Avinoam et al. (2019) Achieving Spatial and Molecular Specificity with Ultrasound-Targeted Biomolecular Nanotherapeutics Accounts of Chemical Research; Vol. 52; No. 9; https://doi.org/10.1021/acs.accounts.9b00277
Wu, Di; Baresch, Diego et al. (2019) Genetically encoded nanostructures enable acoustic manipulation of engineered cells https://doi.org/10.1101/691105
Nadeau, Jay L.; Bedrossian, Manuel et al. (2019) Using the Gouy phase shift to estimate gas vesicle concentrations in salmonella (Conference Presentation) In: Quantitative Phase Imaging V; Series Proceedings of SPIE; No. 10887; In: SPIE BIOS, 2-7 February 2019, San Francisco, CA https://doi.org/10.1117/12.2508953
Kunth, Martin; Lu, George J. et al. (2018) Protein Nanostructures Produce Self-Adjusting Hyperpolarized Magnetic Resonance Imaging Contrast through Physical Gas Partitioning ACS Nano; Vol. 12; No. 11; https://doi.org/10.1021/acsnano.8b04222
Maresca, David; Sawyer, Daniel P. et al. (2018) Nonlinear X-Wave Ultrasound Imaging of Acoustic Biomolecules Physical Review X; Vol. 8; No. 4; https://doi.org/10.1103/physrevx.8.041002
Ramesh, Pradeep; Hwang, Son-Jong et al. (2018) Ultraparamagnetic cells formed through intracellular oxidation and chelation of paramagnetic iron Angewandte Chemie International Edition; Vol. 57; No. 38; https://doi.org/10.1002/anie.201805042
Lu, George; Farhadi, Arash et al. (2018) Genetically encoded acousto-magnetic protein nanostructures for non-invasive imaging of cellular functions In: 256th American Chemical Society National Meeting & Exposition, 19-23 August 2018, Boston, MA https://resolver.caltech.edu/CaltechAUTHORS:20181101-133603645
Lu, George J.; Farhadi, Arash et al. (2018) Proteins, air and water: reporter genes for ultrasound and magnetic resonance imaging Current Opinion in Chemical Biology; Vol. 45; https://doi.org/10.1016/j.cbpa.2018.02.011
Farhadi, Arash; Ho, Gabrielle et al. (2018) Recombinantly Expressed Gas Vesicles as Nanoscale Contrast Agents for Ultrasound and Hyperpolarized MRI AIChE Journal; Vol. 64; No. 8; https://doi.org/10.1002/aic.16138
Szablowski, Jerzy O.; Lee-Gosselin, Audrey et al. (2018) Acoustically Targeted Chemogenetics for Noninvasive Control of Neural Circuits In: Acoustically Targeted Chemogenetics for Noninvasive Control of Neural Circuits; Nature Biomedical Engineering; Vol. 2; No. 7; https://doi.org/10.1038/s41551-018-0258-2
Sato, Tomokazu; Shapiro, Mikhail G. et al. (2018) Ultrasonic Neuromodulation Causes Widespread Cortical Activation via an Indirect Auditory Mechanism In: Ultrasonic Neuromodulation Causes Widespread Cortical Activation via an Indirect Auditory Mechanism; Neuron; Vol. 98; No. 5; https://doi.org/10.1016/j.neuron.2018.05.009
Maresca, David; Lakshmanan, Anupama et al. (2018) Biomolecular Ultrasound and Sonogenetics Annual Review of Chemical and Biomolecular Engineering; Vol. 9; https://doi.org/10.1146/annurev-chembioeng-060817-084034
Lu, George Jiaozhi; Farhadi, Arash et al. (2018) Acoustically modulated magnetic resonance imaging of gas-filled protein nanostructures Nature Materials; Vol. 17; No. 5; https://doi.org/10.1038/s41563-018-0023-7
Le Floc'h, Johann; Zlitni, Aimen et al. (2018) In vivo Biodistribution of Radiolabeled Acoustic Protein Nanostructures Molecular Imaging and Biology; Vol. 20; No. 2; https://doi.org/10.1007/s11307-017-1122-6
Davis, Hunter C.; Ramesh, Pradeep et al. (2018) Mapping the microscale origins of magnetic resonance image contrast with subcellular diamond magnetometry Nature Communications; Vol. 9; https://doi.org/10.1038/s41467-017-02471-7
Bourdeau, Raymond W.; Lee-Gosselin, Audrey et al. (2018) Acoustic reporter genes for noninvasive imaging of microorganisms in mammalian hosts Nature; Vol. 553; No. 7686; https://doi.org/10.1038/nature25021
Ojala, David S.; Sun, Sabrina et al. (2018) In Vivo Selection of a Computationally Designed SCHEMA AAV Library Yields a Novel Variant for Infection of Adult Neural Stem Cells in the SVZ Molecular Therapy; Vol. 26; No. 1; https://doi.org/10.1016/j.ymthe.2017.09.006
Shapiro, Mikhail G.; Homma, Kazuaki et al. (2017) Correspondence: Reply to ‘Revisiting the theoretical cell membrane thermal capacitance response’ Nature Communications; Vol. 8; https://doi.org/10.1038/s41467-017-00436-4
Mukherjee, Arnab; Davis, Hunter C. et al. (2017) Biomolecular MRI reporters: Evolution of new mechanisms Progress in Nuclear Magnetic Resonance Spectroscopy; Vol. 102-103; https://doi.org/10.1016/j.pnmrs.2017.05.002
Piraner, Dan I.; Farhadi, Arash et al. (2017) Going Deeper: Biomolecular Tools for Acoustic and Magnetic Imaging and Control of Cellular Function Biochemistry; Vol. 56; No. 39; https://doi.org/10.1021/acs.biochem.7b00443
Lakshmanan, Anupama; Lu, George J. et al. (2017) Preparation of biogenic gas vesicle nanostructures for use as contrast agents for ultrasound and MRI Nature Protocols; Vol. 12; No. 10; https://doi.org/10.1038/nprot.2017.081
Yoo, Sangjin; Sato, Tomo et al. (2017) Elucidating the biophysical mechanisms of ultrasonic neuromodulation In: 2017 IEEE International Ultrasonics Symposium (IUS); In: 2017 IEEE International Ultrasonics Symposium (IUS), 6-9 September 2017, Washington, DC https://doi.org/10.1109/ULTSYM.2017.8092954
Lakshmanan, Anupama; Nety, Suchita P. et al. (2017) Engineering acoustic biomolecules as dynamic molecular sensors for ultrasound In: 2017 IEEE International Ultrasonics Symposium (IUS); In: 2017 IEEE International Ultrasonics Symposium (IUS), 6-9 September 2017, Washington, DC https://doi.org/10.1109/ULTSYM.2017.8092227
Monge, Manuel; Lee-Gosselin, Audrey et al. (2017) Localization of Microscale Devices In Vivo using Addressable Transmitters Operated as Magnetic Spins Nature Biomedical Engineering; Vol. 1; No. 9; https://doi.org/10.1038/s41551-017-0129-2
Maley, Adam M.; Lu, George J. et al. (2017) Characterizing Single Polymeric and Protein Nanoparticles with Surface Plasmon Resonance Imaging Measurements ACS Nano; Vol. 11; No. 7; https://doi.org/10.1021/acsnano.7b03859
Shapiro, Mikhail G. (2017) Gas vesicles: Acoustic biomolecules for ultrasound imaging Journal of the Acoustical Society of America; Vol. 141; No. 5; https://doi.org/10.1121/1.4988979
Gilad, Assaf A.; Shapiro, Mikhail G. (2017) Molecular Imaging in Synthetic Biology, and Synthetic Biology in Molecular Imaging Molecular Imaging and Biology; Vol. 19; No. 3; https://doi.org/10.1007/s11307-017-1062-1
Cherin, Emmanuel; Melis, Johan M. et al. (2017) Acoustic Behavior of Halobacterium salinarum Gas Vesicles in the High-Frequency Range: Experiments and Modeling Ultrasound in Medicine and Biology; Vol. 43; No. 5; https://doi.org/10.1016/j.ultrasmedbio.2016.12.020
Chen, Yvonne Y.; Shapiro, Mikhail G. et al. (2017) What Is the Role of Circuit Design in the Advancement of Synthetic Biology? Part 1 Cell Systems; Vol. 4; No. 4; https://doi.org/10.1016/j.cels.2017.04.003
Maresca, David; Lakshmanan, Anupama et al. (2017) Nonlinear ultrasound imaging of nanoscale acoustic biomolecules Applied Physics Letters; Vol. 110; No. 7; https://doi.org/10.1063/1.4976105
Barskiy, Danila A.; Coffey, Aaron M et al. (2017) NMR Hyperpolarization Techniques of Gases Chemistry: a European Journal; Vol. 23; No. 4; https://doi.org/10.1002/chem.201603884
Piraner, Dan I.; Abedi, Mohamad H. et al. (2017) Tunable thermal bioswitches for in vivo control of microbial therapeutics Nature Chemical Biology; Vol. 13; No. 1; https://doi.org/10.1038/nchembio.2233
Mukherjee, Arnab; Wu, Di et al. (2016) Non-invasive imaging using reporter genes altering cellular water permeability Nature Communications; Vol. 7; https://doi.org/10.1038/ncomms13891
Lakshmanan, Anupama; Farhadi, Arash et al. (2016) Molecular Engineering of Acoustic Protein Nanostructures ACS Nano; Vol. 10; No. 8; https://doi.org/10.1021/acsnano.6b03364
Shapiro, Mikhail (2016) Genetically encoded nanostructures for non-invasive imaging of biological systems In: 252nd American Chemical Society National Meeting & Exposition, 21-25 August 2016, Philadelphia, PA https://resolver.caltech.edu/CaltechAUTHORS:20160913-083410495
Shapiro, Mikhail G.; Ramirez, R. Matthew et al. (2014) Genetically encoded reporters for hyperpolarized xenon magnetic resonance imaging Nature Chemistry; Vol. 6; No. 7; https://doi.org/10.1038/nchem.1934
Shapiro, Mikhail G.; Goodwill, Patrick W. et al. (2014) Biogenic gas nanostructures as ultrasonic molecular reporters Nature Nanotechnology; Vol. 9; No. 4; https://doi.org/10.1038/nnano.2014.32
Shapiro, Mikhail G. (2014) Genetically Encoded Gas Nanostructures as Biophyically Tunable Molecular Reporters for MRI and Ultrasound Biophysical Journal; Vol. 106; No. 2; In: 58th Annual Meeting of the Biophysical-Society, February 15-19, 2014, San Francisco, CA https://doi.org/10.1016/j.bpj.2013.11.159
Marblestone, Adam H.; Zamft, Bradley M. et al. (2013) Physical principles for scalable neural recoding Frontiers in Computational Neuroscience; Vol. 7; https://doi.org/10.48550/arXiv.1306.5709
Shapiro, Mikhail G.; Priest, Michael F. et al. (2013) Thermal Mechanisms of Millimeter Wave Stimulation of Excitable Cells Biophysical Journal; Vol. 104; No. 12; https://doi.org/10.1016/j.bpj.2013.05.014
Romero, Philip A.; Shapiro, Mikhail G. et al. (2013) Directed Evolution of Protein-Based Neurotransmitter Sensors for MRI In: Chemical Neurobiology : Methods and Protocols; Series Methods in Molecular Biology; No. 995; https://doi.org/10.1007/978-1-62703-345-9_14
Shapiro, Mikhail G.; Frazier, Shawnalea J. et al. (2012) Unparalleled Control of Neural Activity Using Orthogonal Pharmacogenetics ACS Chemical Neuroscience; Vol. 3; No. 8; https://doi.org/10.1021/cn300053q
Shapiro, Mikhail G.; Homma, Kazuaki et al. (2012) Infrared light excites cells by changing their electrical capacitance Nature Communications; Vol. 3; https://doi.org/10.1038/ncomms1742
Shapiro, Mikhail G.; Westmeyer, Gil G. et al. (2010) Directed evolution of a magnetic resonance imaging contrast agent for noninvasive imaging of dopamine Nature Biotechnology; Vol. 28; No. 3; https://doi.org/10.1038/nbt.1609
Shapiro, Mikhail G.; Szablowski, Jerzy O. et al. (2009) Protein Nanoparticles Engineered to Sense Kinase Activity in MRI Journal of the American Chemical Society; Vol. 131; No. 7; https://doi.org/10.1021/ja8086938
Shapiro, Mikhail G.; Atanasijevic, Tatjana et al. (2006) Dynamic imaging with MRI contrast agents: quantitative considerations Magnetic Resonance Imaging; Vol. 24; No. 4; https://doi.org/10.1016/j.mri.2005.12.033