Rothenberg, Ellen

Article from CaltechAUTHORS

Shin, Boyoung and Chang, Samantha J., el al. (2024) Transcriptional network dynamics in early T cell development; Journal of Experimental Medicine; Vol. 221; No. 10; e20230893; 10.1084/jem.20230893
Andersson, Emil and Rothenberg, Ellen V., el al. (2024) T-cell commitment inheritance—an agent-based multi-scale model; npj Systems Biology and Applications; Vol. 10; 40; PMCID PMC11024127; 10.1038/s41540-024-00368-y
Schulte, Samuel J. and Shin, Boyoung, el al. (2024) Multiplex, Quantitative, High-Resolution Imaging of Protein:Protein Complexes via Hybridization Chain Reaction; ACS Chemical Biology; Vol. 19; No. 2; 280-288; PMCID PMC10877569; 10.1021/acschembio.3c00431
Spolski, Rosanne and Li, Peng, el al. (2023) Distinct use of super-enhancer elements controls cell type–specific CD25 transcription and function; Science Immunology; Vol. 8; No. 89; eadi8217; 10.1126/sciimmunol.adi8217
Shin, Boyoung and Zhou, Wen, el al. (2023) Runx factors launch T cell and innate lymphoid programs via direct and gene network-based mechanisms; Nature Immunology; Vol. 24; No. 9; 1458-1472; PMCID PMC10673614; 10.1038/s41590-023-01585-z
MacNabb, Brendan W. and Rothenberg, Ellen V. (2023) Speed and navigation control of thymocyte development by the fetal T-cell gene regulatory network; Immunological Reviews; Vol. 315; No. 1; 171-196; PMCID PMC10771342; 10.1111/imr.13190
Kagan, Jonathan C. and Rothenberg, Ellen V., el al. (2023) Cold Spring Harbor Laboratory 2022: emerging insights and viewpoints in immunology; Trends in Immunology; Vol. 44; No. 4; 248-255; 10.1016/j.it.2023.02.003
Shin, Boyoung and Rothenberg, Ellen V. (2023) Multi-modular structure of the gene regulatory network for specification and commitment of murine T cells; Frontiers in Immunology; Vol. 14; Art. No. 1108368; PMCID PMC9928580; 10.3389/fimmu.2023.1108368
Rothenberg, Ellen V. (2022) Transcription factors specifically control change; Genes and Development; Vol. 36; No. 21-24; 1097-1099; PMCID PMC9851400; 10.1101/gad.350308.122
Rothenberg, Ellen V. (2022) The Heart of the Machine: Construction of T Cell Identity, Made Accessible; Journal of Immunology; Vol. 209; No. 7; 1235-1236; 10.4049/jimmunol.2200264
Zhou, Wen and Gao, Fan, el al. (2022) Single-cell deletion analyses show control of pro–T cell developmental speed and pathways by Tcf7, Spi1, Gata3, Bcl11a, Erg, and Bcl11b; Science Immunology; Vol. 7; No. 71; eabm1920; PMCID PMC9273332; 10.1126/sciimmunol.abm1920
Rothenberg, Ellen V. (2021) Logic and lineage impacts on functional transcription factor deployment for T-cell fate commitment; Biophysical Journal; Vol. 120; No. 19; 4162-4181; 10.1016/j.bpj.2021.04.002
Hosokawa, Hiroyuki and Koizumi, Maria, el al. (2021) Stage-specific action of Runx1 and GATA3 controls silencing of PU.1 expression in mouse pro-T cells; Journal of Experimental Medicine; Vol. 218; No. 8; Art. No. e20202648; PMCID PMC8241539; 10.1084/jem.20202648
Sidwell, Tom and Rothenberg, Ellen V. (2021) Epigenetic Dynamics in the Function of T-Lineage Regulatory Factor Bcl11b; Frontiers in Immunology; Vol. 12; Art. No. 669498; PMCID PMC8079813; 10.3389/fimmu.2021.669498
Rothenberg, Ellen V. (2021) Single-cell insights into the hematopoietic generation of T-lymphocyte precursors in mouse and human; Experimental Hematology; Vol. 95; 1-12; PMCID PMC8018899; 10.1016/j.exphem.2020.12.005
Hosokawa, Hiroyuki and Rothenberg, Ellen V. (2021) How transcription factors drive choice of the T cell fate; Nature Reviews. Immunology; Vol. 21; No. 3; 162-176; 10.1038/s41577-020-00426-6
Shin, Boyoung and Hosokawa, Hiroyuki, el al. (2021) Runx1 and Runx3 drive progenitor to T-lineage transcriptome conversion in mouse T cell commitment via dynamic genomic site switching; Proceedings of the National Academy of Sciences of the United States of America; Vol. 118; No. 4; Art. No. e2019655118; PMCID PMC7848575; 10.1073/pnas.2019655118
Olariu, Victor and Yui, Mary A., el al. (2021) Multi-scale Dynamical Modeling of T Cell Development from an Early Thymic Progenitor State to Lineage Commitment; Cell Reports; Vol. 34; No. 2; Art. No. 108622; PMCID PMC7943435; 10.1016/j.celrep.2020.108622
Rothenberg, Ellen V. and Göttgens, Berthold (2021) How haematopoiesis research became a fertile ground for regulatory network biology as pioneered by Eric Davidson; Current Opinion in Hematology; Vol. 28; No. 1; 1-10; PMCID PMC7755131; 10.1097/moh.0000000000000628
Romero-Wolf, Maile and Shin, Boyoung, el al. (2020) Notch2 complements Notch1 to mediate inductive signaling that initiates early T cell development; Journal of Cell Biology; Vol. 219; No. 10; Art. No. e202005093; PMCID PMC7659720; 10.1083/jcb.202005093
Wang, Xun and Rothenberg, Ellen V. (2020) Illuminating the core of adaptive immunity—how the regulatory genome controls Rag chromatin dynamics; Science Immunology; Vol. 5; No. 51; Art. No. eabd6427; 10.1126/sciimmunol.abd6427
Spolski, Rosanne and Li, Peng, el al. (2020) Functional dissection of the Il2ra superenhancer reveals developmentally regulated and cell type specific elements; Journal of Immunology; Vol. 204; No. S1; Art. No. 78.16
Hosokawa, Hiroyuki and Romero-Wolf, Maile, el al. (2020) Cell type–specific actions of Bcl11b in early T-lineage and group 2 innate lymphoid cells; Journal of Experimental Medicine; Vol. 217; No. 1; Art. No. e20190972; PMCID PMC7037248; 10.1084/jem.20190972
Rothenberg, Ellen V. (2019) Dynamic control of the T-cell specification gene regulatory network; Current Opinion in Systems Biology; Vol. 18; 62-76; PMCID PMC7015151; 10.1016/j.coisb.2019.10.012
Zhou, Wen and Rothenberg, Ellen V. (2019) Building a Human Thymus: A Pointillist View; Immunity; Vol. 51; No. 5; 788-790; 10.1016/j.immuni.2019.10.003
Zhou, Wen and Yui, Mary A., el al. (2019) Single-Cell Analysis Reveals Regulatory Gene Expression Dynamics Leading to Lineage Commitment in Early T Cell Development; Cell Systems; Vol. 9; No. 4; 321-337; PMCID PMC6932747; 10.1016/j.cels.2019.09.008
Sashital, Dipali and Blanpain, Cedric, el al. (2019) Advice from Cell Press Reviewers; Cell; Vol. 179; No. 1; 40-45; 10.1016/j.cell.2019.08.044
Rothenberg, Ellen V. (2019) Programming for T-lymphocyte fates: modularity and mechanisms; Genes and Development; Vol. 33; No. 17-18; 1117-1135; PMCID PMC6719619; 10.1101/gad.327163.119
Rothenberg, Ellen V. (2019) Causal Gene Regulatory Network Modeling and Genomics: Second-Generation Challenges; Journal of Computational Biology; Vol. 26; No. 7; 703-718; PMCID PMC6661971; 10.1089/cmb.2019.0098
Rothenberg, Ellen V. (2019) Encounters across networks: Windows into principles of genomic regulation; Marine Genomics; Vol. 44; 3-12; PMCID PMC6431589; 10.1016/j.margen.2019.01.003
Rothenberg, Ellen V. and Hosokawa, Hiroyuki, el al. (2019) Mechanisms of Action of Hematopoietic Transcription Factor PU.1 in Initiation of T-Cell Development; Frontiers in Immunology; Vol. 10; Art. No. 228; PMCID PMC6391351; 10.3389/fimmu.2019.00228
Hosokawa, Hiroyuki and Romero-Wolf, Maile, el al. (2018) Bcl11b sets pro-T cell fate by site-specific cofactor recruitment and by repressing Id2 and Zbtb16; Nature Immunology; Vol. 19; No. 12; 1427-1440; PMCID PMC6240390; 10.1038/s41590-018-0238-4
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Hosokawa, Hiroyuki and Ungerbäck, Jonas, el al. (2018) Transcription Factor PU.1 Represses and Activates Gene Expression in Early T Cells by Redirecting Partner Transcription Factor Binding; Immunity; Vol. 48; No. 6; 1119-1134; PMCID PMC6063530; 10.1016/j.immuni.2018.04.024
Hosokawa, Hiroyuki and Rothenberg, Ellen V. (2018) Cytokines, Transcription Factors, and the Initiation of T-Cell Development; Cold Spring Harbor Perspectives in Biology; Vol. 10; No. 5; 1-19; PMCID PMC5876153; 10.1101/cshperspect.a028621
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Rothenberg, Ellen V. (2017) Fitting structure to function in gene regulatory networks; History and Philosophy of the Life Sciences; Vol. 39; No. 4; Art. No. 37; PMCID PMC5660880; 10.1007/s40656-017-0164-z
He, Zhiheng and Ma, Jian, el al. (2017) A two-amino-acid substitution in the transcription factor RORγt disrupts its function in T_H17 differentiation but not in thymocyte development; Nature Immunology; Vol. 18; No. 10; 1128-1138; PMCID PMC5678981; 10.1038/ni.3832
Longabaugh, William J. R. and Zeng, Weihua, el al. (2017) Bcl11b and combinatorial resolution of cell fate in the T-cell gene regulatory network; Proceedings of the National Academy of Sciences of the United States of America; Vol. 114; No. 23; 5800-5807; PMCID PMC5468679; 10.1073/pnas.1610617114
Tsagaratou, Ageliki and González-Avalos, Edahí, el al. (2017) TET proteins regulate the lineage specification and TCR-mediated expansion of iNKT cells; Nature Immunology; Vol. 18; No. 1; 45-53; PMCID PMC5376256; 10.1038/ni.3630
Rothenberg, Ellen V. (2016) Multiple Curricula for B Cell Developmental Programming; Immunity; Vol. 45; No. 3; 457-458; 10.1016/j.immuni.2016.09.005
Manesso, Erica and Kueh, Hao Yuan, el al. (2016) Irreversibility of T-cell specification: insights from computational modelling of a minimal network architecture; PLoS ONE; Vol. 11; No. 8; Art. No. e0161260; PMCID PMC4995000; 10.1371/journal.pone.0161260
Rothenberg, E. and Kueh, H. Y., el al. (2016) Dissecting the transcriptional regulatory network for early T-cell commitment; European Journal of Immunology; Vol. 46; No. S1; 797; 10.1002/eji.201670200
Kueh, Hao Yuan and Yui, Mary A., el al. (2016) Asynchronous combinatorial action of four regulatory factors activates Bcl11b for T cell commitment; Nature Immunology; Vol. 17; No. 8; 956-965; PMCID PMC4955789; 10.1038/ni.3514
Rothenberg, Ellen V. and Kueh, Hao Yuan, el al. (2016) Hematopoiesis and T-cell specification as a model developmental system; Immunological Reviews; Vol. 271; No. 1; 72-97; PMCID PMC4837658; 10.1111/imr.12417
Rothenberg, Ellen V. (2016) Eric Davidson: Steps to A Gene Regulatory Network for Development; Developmental Biology; Vol. 412; No. 2; S7-S19; PMCID PMC4828313; 10.1016/j.ydbio.2016.01.020
Van de Walle, Inge and Dolens, Anne-Catherine, el al. (2016) GATA3 induces human T-cell commitment by restraining Notch activity and repressing NK-cell fate; Nature Communications; Vol. 7; Art. No. 11171; PMCID PMC4823830; 10.1038/ncomms11171
Rothenberg, Ellen V. and Ungerbäck, Jonas, el al. (2016) Forging T-Lymphocyte Identity: Intersecting Networks of Transcriptional Control; Advances in Immunology; Vol. 129; 109-174; PMCID PMC4747653; 10.1016/bs.ai.2015.09.002
Hood, Leroy and Rothenberg, Ellen V. (2015) Developmental biologist Eric H. Davidson, 1937–2015; Proceedings of the National Academy of Sciences of the United States of America; Vol. 112; No. 44; 13423-13425; PMCID PMC4640791; 10.1073/pnas.1518876112
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Rothenberg, Ellen V. (2015) Immune Cell Identity: Perspective from a Palimpsest; Perspectives in Biology and Medicine; Vol. 58; No. 2; 205-228; PMCID PMC4747652; 10.1353/pbm.2015.0020
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Yui, Mary A. and Rothenberg, Ellen V. (2014) Developmental gene networks: a triathlon on the course to T cell identity; Nature Reviews. Immunology; Vol. 14; No. 8; 529-545; PMCID PMC4153685; 10.1038/nri3702
Kueh, Hao Yuan and Elowitz, Michael B., el al. (2014) Macrophage and T-cell fate control: Insights from tracking transcription factor dynamics in single cells; Experimental Hematology; Vol. 42; No. 8; S16; 10.1016/j.exphem.2014.07.054
Rothenberg, Ellen V. (2014) The chromatin landscape and transcription factors in T cell programming; Trends in Immunology; Vol. 35; No. 5; 195-204; PMCID PMC4039984; 10.1016/j.it.2014.03.001
Rothenberg, Ellen V. (2014) Transcriptional Control of Early T and B Cell Developmental Choices; Annual Review of Immunology; Vol. 32; 283-321; PMCID PMC3994230; 10.1146/annurev-immunol-032712-100024
Rothenberg, Ellen V. (2013) Epigenetic mechanisms and developmental choice hierarchies in T-lymphocyte development; Briefings in Functional Genomics; Vol. 12; No. 6; 512-524; PMCID PMC3838197; 10.1093/bfgp/elt027
Rothenberg, Ellen V. and Champhekar, Ameya, el al. (2013) Transcriptional Establishment of Cell-Type Identity: Dynamics and Causal Mechanisms of T-Cell Lineage Commitment; Cold Spring Harbor Symposia on Quantitative Biology; Vol. 78; 1-11; PMCID PMC3990665; 10.1101/sqb.2013.78.020271
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Rothenberg, Ellen (2013) Transcriptional and epigenetic thresholds for entry to the T-cell developmental program; Experimental Hematology; Vol. 41; No. 8; S8
Yui, Mary A. and Feng, Ni, el al. (2013) Loss of T Cell Progenitor Checkpoint Control Underlies Leukemia Initiation in Rag1-Deficient Nonobese Diabetic Mice; Journal of Immunology; Vol. 190; No. 7; 3276-3288; PMCID PMC3608698; 10.4049/jimmunol.1202970
Del Real, Marissa Morales and Rothenberg, Ellen V. (2013) Architecture of a lymphomyeloid developmental switch controlled by PU.1, Notch and Gata3; Development; Vol. 140; No. 6; 1207-1219; PMCID PMC3585658; 10.1242/dev.088559
Rothenberg, Ellen V. (2013) GATA-3 locks the door to the B-cell option; Blood; Vol. 121; No. 10; 1673-1674; PMCID PMC3591792; 10.1182/blood-2013-01-477737
Manesso, Erica and Chickarmane, Vijay, el al. (2013) Computational modelling of T-cell formation kinetics: output regulated by initial proliferation-linked deferral of developmental competence; Journal of the Royal Society Interface; Vol. 10; No. 78; Art. No. 20120774; PMCID PMC3565808; 10.1098/rsif.2012.0774
Zarnegar, M. A. and Rothenberg, E. V. (2012) Ikaros represses and activates PU.1 cell-type-specifically through the multifunctional Sfpi1 URE and a myeloid specific enhancer; Oncogene; Vol. 31; No. 43; 4647-4654; PMCID PMC3679182; 10.1038/onc.2011.597
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Rothenberg, Ellen V. (2012) Transcriptional drivers of the T-cell lineage program; Current Opinion in Immunology; Vol. 24; No. 2; 132-138; PMCID PMC3319509; 10.1016/j.coi.2011.12.012
Kueh, Hao Yuan and Rothenberg, Ellen V. (2012) Regulatory gene network circuits underlying T cell development from multipotent progenitors; Wiley Interdisciplinary Reviews. Systems Biology and Medicine; Vol. 4; No. 1; 79-102; PMCID PMC3242926; 10.1002/wsbm.162
Rothenberg, Ellen V. (2011) T Cell Lineage Commitment: Identity and Renunciation; Journal of Immunology; Vol. 186; No. 12; 6649-6655; PMCID PMC3111953; 10.4049/jimmunol.1003703
Feng, Ni and Vegh, Patricia, el al. (2011) Lineage Divergence at the First TCR-Dependent Checkpoint: Preferential γδ and Impaired αβ T Cell Development in Nonobese Diabetic Mice; Journal of Immunology; Vol. 186; No. 2; 826-837; PMCID PMC4087166; 10.4049/jimmunol.1002630
Rothenberg, Ellen V. (2010) Lineage determination in the immune system; Immunological Reviews; Vol. 238; No. 1; 5-11; PMCID PMC3058842; 10.1111/j.1600-065X.2010.00965.x
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Rothenberg, Ellen V. (2010) B cell specification from the genome up; Nature Immunology; Vol. 11; No. 7; 572-574; 10.1038/ni0710-572
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Rothenberg, Ellen V. and Murre, Cornelis (2010) Editorial overview; Current Opinion in Immunology; Vol. 22; No. 2; 145-147; 10.1016/j.coi.2010.03.002
Rothenberg, Ellen V. and Murre, Cornelis (2010) Lymphocyte development; Current Opinion in Immunology; Vol. 22; No. 2; 145-147; 10.1016/j.coi.2010.03.002
Novak, Thomas J. and Rothenberg, Ellen V. (2009) Differential Transient and Long-Term Expression of DNA Sequences Introduced into T-Lymphocyte Lines; DNA; Vol. 5; No. 6; 439-451; 10.1089/dna.1.1986.5.439
Rothenberg, Ellen V. (2009) Decision by committee: new light on the CD4/CD8-lineage choice; Immunology and Cell Biology; Vol. 87; No. 2; 109-112; 10.1038/icb.2008.100
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Taghon, Tom and Rothenberg, Ellen V. (2008) Molecular mechanisms that control mouse and human TCR-αβ and TCR-γδ T cell development; Seminars In Immunopathology; Vol. 30; No. 4; 383-398; 10.1007/s00281-008-0134-3
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Rothenberg, Ellen V. and Scripture-Adams, Deirdre D. (2008) Competition and collaboration: GATA-3, PU.1, and Notch signaling in early T-cell fate determination; Seminars in Immunology; Vol. 20; No. 4; 236-246; PMCID PMC2634812; 10.1016/j.smim.2008.07.006
Rothenberg, Ellen V. (2008) Erg in stem cells: a function emerges; Nature Immunology; Vol. 9; No. 7; 714-716; 10.1038/ni0708-714
Rothenberg, Ellen V. and Moore, Jonathan E., el al. (2008) Launching the T-cell-lineage developmental programme; Nature Reviews. Immunology; Vol. 8; No. 1; 9-21; PMCID PMC3131407; 10.1038/nri2232
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Rothenberg, Ellen V. (2007) Regulatory factors for initial T lymphocyte lineage specification; Current Opinion in Hematology; Vol. 14; No. 4; 322-329; 10.1097/MOH.0b013e3281de72a8
Rothenberg, Ellen V. (2007) Negotiation of the T Lineage Fate Decision by Transcription-Factor Interplay and Microenvironmental Signals; Immunity; Vol. 26; No. 6; 690-702; 10.1016/j.immuni.2007.06.005
Rothenberg, Ellen V. (2007) Cell lineage regulators in B and T cell development; Nature Immunology; Vol. 8; No. 5; 441-444; 10.1038/ni1461
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Adachi, Satoko and Rothenberg, Ellen V. (2005) Cell-type-specific epigenetic marking of the IL2 gene at a distal cis-regulatory region in competent, nontranscribing T-cells; Nucleic Acids Research; Vol. 33; No. 10; 3200-3210; PMCID PMC1142491; 10.1093/nar/gki637
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Rothenberg, Ellen V. and Taghon, Tom (2005) Molecular Genetics of T Cell Development; Annual Review of Immunology; Vol. 23; 601-649; 10.1146/annurev.immunol.23.021704.115737
Rothenberg, Ellen V. (2005) Thymic Regulation--Hidden in Plain Sight; Science; Vol. 307; No. 5711; 858-859; 10.1126/science.1109501
Yui, Mary A. and Rothenberg, Ellen V. (2004) Deranged Early T Cell Development in Immunodeficient Strains of Nonobese Diabetic Mice; Journal of Immunology; Vol. 173; No. 9; 5381-5391; 10.4049/jimmunol.173.9.5381
Rothenberg, Ellen V. and Pant, Rashmi (2004) Origins of lymphocyte developmental programs: transcription factor evidence; Seminars in Immunology; Vol. 16; No. 4; 227-238; 10.1016/j.smim.2004.08.002
Anderson, Michele K. and Pant, Rashmi, el al. (2004) Evolutionary Origins of Lymphocytes: Ensembles of T Cell and B Cell Transcriptional Regulators in a Cartilaginous Fish; Journal of Immunology; Vol. 172; No. 10; 5851-5860; 10.4049/jimmunol.172.10.5851
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Rothenberg, Ellen V. (2004) From totipotency to T in a dish; Nature Immunology; Vol. 5; No. 4; 359-360; 10.1038/ni0404-359
Hernández-Hoyos, Gabriela and Anderson, Michele K., el al. (2003) GATA-3 Expression Is Controlled by TCR Signals and Regulates CD4/CD8 Differentiation; Immunity; Vol. 19; No. 1; 83-94; 10.1016/S1074-7613(03)00176-6
Warren, Luigi A. and Rothenberg, Ellen V. (2003) Regulatory coding of lymphoid lineage choice by hematopoietic transcription factors; Current Opinion in Immunology; Vol. 15; No. 2; 166-175; 10.1016/S0952-7915(03)00011-6
Rothenberg, Ellen V. (2002) T-lineage specification and commitment: a gene regulation perspective; Seminars in Immunology; Vol. 14; No. 6; 431-440; 10.1016/S1044532302000787
Rothenberg, Ellen V. and Dionne, Christopher J. (2002) Lineage plasticity and commitment in T-cell development; Immunological Reviews; Vol. 187; No. 1; 96-115; 10.1034/j.1600-065X.2002.18709.x
Anderson, Michele K. and Hernandez-Hoyos, Gabriela, el al. (2002) Definition of Regulatory Network Elements for T Cell Development by Perturbation Analysis with PU.1 and GATA-3; Developmental Biology; Vol. 246; No. 1; 103-121; 10.1006/dbio.2002.0674
Rothenberg, Ellen V. and Anderson, Michele K. (2002) Elements of Transcription Factor Network Design for T-Lineage Specification; Developmental Biology; Vol. 246; No. 1; 29-44; 10.1006/dbio.2002.0667
Anderson, Michele K. and Weiss, Angela H., el al. (2002) Constitutive Expression of PU.1 in Fetal Hematopoietic Progenitors Blocks T Cell Development at the Pro-T Cell Stage; Immunity; Vol. 16; No. 2; 285-296; 10.1016/S1074-7613(02)00277-7
Rothenberg, Ellen V. (2001) Mapping of complex regulatory elements by pufferfish/zebrafish transgenesis; Proceedings of the National Academy of Sciences of the United States of America; Vol. 98; No. 12; 6540-6542; PMCID PMC34387
Makita, Takako and Hernandez-Hoyos, Gabriela, el al. (2001) A developmental transition in definitive erythropoiesis: erythropoietin expression is sequentially regulated by retinoic acid receptors and HNF4; Genes and Development; Vol. 15; No. 7; 889-901; PMCID PMC312661; 10.1101/gad.871601
Miracle, Ann L. and Anderson, Michele K., el al. (2001) Complex expression patterns of lymphocyte-specific genes during the development of cartilaginous fish implicate unique lymphoid tissues in generating an immune repertoire; International Immunology; Vol. 13; No. 4; 567-580; 10.1093/intimm/13.4.567
Rothenberg, Ellen V. (2001) Notchless T cell maturation?; Nature Immunology; Vol. 2; No. 3; 189-190; 10.1038/85231
Yui, Mary A. and Hernández-Hoyos, Gabriela, el al. (2001) A New Regulatory Region of the IL-2 Locus That Confers Position-Independent Transgene Expression; Journal of Immunology; Vol. 166; No. 3; 1730-1739; 10.4049/jimmunol.166.3.1730
Chen, Fei and Rowen, Lee, el al. (2001) Differential Transcriptional Regulation of Individual TCR V Segments Before Gene Rearrangement; Journal of Immunology; Vol. 166; No. 3; 1771-1780; 10.4049/jimmunol.166.3.1771
Anderson, Michele K. and Sun, Xiao, el al. (2001) Evolution of hematopoiesis: Three members of the PU.1 transcription factor family in a cartilaginous fish, Raja eglanteria; Proceedings of the National Academy of Sciences of the United States of America; Vol. 98; No. 2; 553-558; PMCID PMC14625; 10.1073/pnas.021478998
Telfer, Janice C. and Rothenberg, Ellen V. (2001) Expression and Function of a Stem Cell Promoter for the Murine CBFα2 Gene: Distinct Roles and Regulation in Natural Killer and T Cell Development; Developmental Biology; Vol. 229; No. 2; 363-382; 10.1006/dbio.2000.9991
Rothenberg, Ellen V. (2000) Stepwise specification of lymphocyte developmental lineages; Current Opinion in Genetics and Development; Vol. 10; No. 4; 370-379; 10.1016/S0959-437X(00)00098-8
Hernández-Hoyos, Gabriela and Sohn, Sue J., el al. (2000) Lck Activity Controls CD4/CD8 T Cell Lineage Commitment; Immunity; Vol. 12; No. 3; 313-322; 10.1016/S1074-7613(00)80184-3
Rothenberg, Ellen V. and Telfer, Janice C., el al. (1999) Transcriptional regulation of lymphocyte lineage commitment; Bioessays; Vol. 21; No. 9; 726-742; 10.1002/(SICI)1521-1878(199909)21:9<726::AID-BIES4>3.0.CO;2-S
Anderson, Michele K. and Hernandez-Hoyos, Gabriela, el al. (1999) Precise developmental regulation of Ets family transcription factors during specification and commitment to the T cell lineage; Development; Vol. 126; No. 14; 3131-3148
Chen, Fei and Chen, Dan, el al. (1999) Specific regulation of Fos family transcription factors in thymocytes at two developmental checkpoints; International Immunology; Vol. 11; No. 5; 677-688; 10.1093/intimm/11.5.677
Wang, Hua and Diamond, Rochelle A., el al. (1998) Precocious expression of T cell functional response genes in vivo in primitive thymocytes before T lineage commitment; International Immunology; Vol. 10; No. 11; 1623-1635; 10.1093/intimm/10.11.1623
Ward, Susan B. and Hernandez-Hoyos, Gabriela, el al. (1998) Chromatin remodeling of the interleukin-2 gene: distinct alterations in the proximal versus distal enhancer regions; Nucleic Acids Research; Vol. 26; No. 12; 2923-2934; PMCID PMC147656
Wang, Hua and Diamond, Rochelle A., el al. (1998) Cross-lineage expression of Ig-beta (B29) in thymocytes: Positive and negative gene regulation to establish T cell identity; Proceedings of the National Academy of Sciences of the United States of America; Vol. 95; No. 12; 6831-6836; PMCID PMC22652
Yang-Snyder, Julia A. and Rothenberg, Ellen V. (1998) Spontaneous Expression of Interleukin-2 In Vivo in Specific Tissues of Young Mice; Developmental Immunology; Vol. 5; No. 4; 223-245; PMCID PMC2275993; 10.1155/1998/12421
Diamond, Rochelle A. and Ward, Susan B., el al. (1997) Different Developmental Arrest Points in RAG-2 -/- and SCID Thymocytes on Two Genetic Backgrounds Developmental Choices and Cell Death Mechanisms before TCR Gene Rearrangement; Journal of Immunology; Vol. 158; No. 9; 4052-4064
Rothenberg, Ellen V. and Ward, Susan B. (1996) A dynamic assembly of diverse transcription factors integrates activation and cell-type information for interleukin 2 gene regulation; Proceedings of the National Academy of Sciences of the United States of America; Vol. 93; No. 18; 9358-9365; PMCID PMC38432
Rothenberg, Ellen V. (1996) How T Cells Count; Science; Vol. 273; No. 5271; 78-79; 10.1126/science.273.5271.78
Reya, Tannishtha and Yang-Snyder, Julia A., el al. (1996) Regulated expression and function of CD122 (interleukin-2/interleukin-15R-β) during lymphoid development; Blood; Vol. 87; No. 1; 190-201
Lindenboim, Liora and Diamond, Rochelle, el al. (1995) Apoptosis Induced by Serum Deprivation of PC12 Cells Is Not Preceded by Growth Arrest and Can Occur at Each Phase of the Cell Cycle; Cancer Research; Vol. 55; No. 6; 1242-1247
Rothenberg, Ellen V. (1994) Signaling mechanisms in thymocyte selection; Current Opinion in Immunology; Vol. 6; No. 2; 257-265; 10.1016/0952-7915(94)90099-X
Chen, Dan and Rothenberg, Ellen V. (1994) Interleukin 2 transcription factors as molecular targets of cAMP inhibition: delayed inhibition kinetics and combinatorial transcription roles; Journal of Experimental Medicine; Vol. 179; No. 3; 931-942; PMCID PMC2191402; 10.1084/jem.179.3.931
Garrity, Paul A. and Chen, Dan, el al. (1994) Interleukin-2 transcription is regulated in vivo at the level of coordinated binding of both constitutive and regulated factors; Molecular and Cellular Biology; Vol. 14; No. 3; 2159-2169; PMCID PMC358576; 10.1128/MCB.14.3.2159
Rothenberg, Ellen V. and Diamond, Rochelle A. (1994) Costimulation by interleukin-1 of multiple activation responses in a developmentally restricted subset of immature thymocytes; European Journal of Immunology; Vol. 24; No. 1; 24-33; 10.1002/eji.1830240105
Rothenberg, Ellen V. and Chen, Dan, el al. (1993) Functional and phenotypic analysis of thymocytes in SCID mice. Evidence for functional response transitions before and after the SCID arrest point; Journal of Immunology; Vol. 151; No. 7; 3530-3546
Chen, Dan and Rothenberg, Ellen V. (1993) Molecular basis for developmental changes in interleukin-2 gene inducibility; Molecular and Cellular Biology; Vol. 13; No. 1; 228-237; PMCID PMC358902
Yang-Snyder, Julia A. and Rothenberg, Ellen V. (1993) Developmental and Anatomical Patterns Of IL-2 Gene Expression in Vivo in The Murine Thymus; Developmental Immunology; Vol. 3; No. 2; 85-102; PMCID PMC2275923; 10.1155/1993/86096
Novak, Thomas J. and Yoshimura, Fayth K., el al. (1992) In vitro transfection of fresh thymocytes and T cells shows subset-specific expression of viral promoters; Molecular and Cellular Biology; Vol. 12; No. 4; 1515-1527; PMCID PMC369593
Novak, Thomas J. and Rothenberg, Ellen V. (1990) cAMP inhibits induction of interleukin 2 but not of interleukin 4 in T cells; Proceedings of the National Academy of Sciences of the United States of America; Vol. 87; No. 23; 9353-9357; PMCID PMC55163; 10.1073/pnas.87.23.9353
Novak, Thomas J. and Chen, Dan, el al. (1990) Interleukin-1 Synergy with Phosphoinositide Pathway Agonists for Induction of Interleukin-2 Gene Expression: Molecular Basis of Costimulation; Molecular and Cellular Biology; Vol. 10; No. 12; 6325-6334; PMCID PMC362908
Novak, Thomas J. and White, Patricia M., el al. (1990) Regulatory anatomy of the murine interleukin-2 gene; Nucleic Acids Research; Vol. 18; No. 15; 4523-4533; PMCID PMC331273; 10.1093/nar/18.15.4523
Rothenberg, Ellen V. (1990) Death and transfiguration of cortical thymocytes: a reconsideration; Immunology Today; Vol. 11; No. 4; 116-119; 10.1016/0167-5699(90)90047-D
Rothenberg, Ellen V. and Diamond, Rochelle A., el al. (1990) IL-2 gene inducibility in T cells before T cell receptor expression. Changes in signaling pathways and gene expression requirements during intrathymic maturation; Journal of Immunology; Vol. 144; No. 5; 1614-1624
Boyer, Paul D. and Diamond, Rochelle A., el al. (1989) Changes in inducibility of IL-2 receptor alpha-chain and T cell-receptor expression during thymocyte differentiation in the mouse; Journal of Immunology; Vol. 142; No. 12; 4124-4130
Rothenberg, Ellen V. (1989) The long road to functional maturity for developing T cells; Immunology Today; Vol. 10; No. 4; 116-117; 10.1016/0167-5699(89)90243-0
McGuire, Kathleen L. and Yang, Julia A., el al. (1988) Influence of activating stimulus on functional phenotype: Interleukin 2 mRNA accumulation differentially induced by ionophore and receptor ligands in subsets of murine T cells; Proceedings of the National Academy of Sciences of the United States of America; Vol. 85; No. 17; 6503-6507; PMCID PMC282001
Rothenberg, Ellen V. and McGuire, Kathleen L., el al. (1988) Molecular Indices of Functional Competence in Developing T Cells; Immunological Reviews; Vol. 104; No. 1; 29-53; 10.1111/j.1600-065X.1988.tb00758.x
Boyer, Paul D. and Rothenberg, Ellen V. (1988) IL-2 receptor inducibility is blocked in cortical-type thymocytes; Journal of Immunology; Vol. 140; No. 9; 2886-2892
Kinnon, Christine and McGuire, Kathleen L., el al. (1987) Differential regulation of T cell receptor gamma genes in immature thymocyte populations; European Journal of Immunology; Vol. 17; No. 9; 1265-1269; 10.1002/eji.1830170908
McGuire, Kathleen L. and Rothenberg, Ellen V. (1987) Inducibility of interleukin-2 RNA expression in individual mature and immature T lymphocytes; EMBO Journal; Vol. 6; No. 4; 939-946; PMCID PMC553486
Haas, Martin and Altman, Amnon, el al. (1987) Radiation leukemia virus and X-irradiation induce in C57BL/6 mice two distinct T-cell neoplasms: A growth factor-dependent lymphoma and a growth factor-independent lymphoma; Leukemia Research; Vol. 11; No. 3; 223-239; 10.1016/0145-2126(87)90046-4
Kinnon, Christine and Diamond, Rochelle A., el al. (1986) Activation of T cell antigen receptor alpha- and beta-chain genes in the thymus: implications for the lineages of developing cortical thymocytes; Journal of Immunology; Vol. 137; No. 12; 4010-4015
Lugo, James P. and Krishnan, Santosh N., el al. (1986) Early Precursor Thymocytes Can Produce Interleukin 2 upon Stimulation with Calcium Ionophore and Phorbol Ester; Proceedings of the National Academy of Sciences of the United States of America; Vol. 83; No. 6; 1862-1866; PMCID PMC323184
Rothenberg, Ellen and Lugo, James P. (1985) Differentiation and cell division in the mammalian thymus; Developmental Biology; Vol. 112; No. 1; 1-17; 10.1016/0012-1606(85)90114-9
Lugo, J. P. and Krishnan, S. N., el al. (1985) Proliferation of thymic stem cells with and without receptors for interleukin 2. Implications for intrathymic antigen recognition; Journal of Experimental Medicine; Vol. 161; No. 5; 1048-1062; PMCID PMC2187600; 10.1084/jem.161.5.1048
Caplan, Barry and Rothenberg, Ellen (1984) High-level secretion of interleukin 2 by a subset of proliferating thymic lymphoblasts; Journal of Immunology; Vol. 133; No. 4; 1983-1991
Haas, Martin and Altman, Amnon, el al. (1984) Mechanism of T-Cell Lymphomagenesis: Transformation of Growth-Factor-Dependent T-Lymphoblastoma Cells to Growth-Factor-Independent T-Lymphoma Cells; Proceedings of the National Academy of Sciences of the United States of America; Vol. 81; No. 6; 1742-1746; PMCID PMC344995
Rothenberg, Ellen and Triglia, Dennis (1983) Clonal proliferation unlinked to terminal deoxynucleotidyl transferase synthesis in thymocytes of young mice; Journal of Immunology; Vol. 130; No. 4; 1627-1633
Rothenberg, E. and Triglia, D. (1983) Lyt-2 glycoprotein is synthesized as a single molecular species; Journal of Experimental Medicine; Vol. 157; No. 1; 365-370; PMCID PMC2186898; 10.1084/jem.157.1.365
Rothenberg, Ellen (1982) What is the role of T-lymphocyte surveillance in neoplastic disease?; American Journal of Surgery; Vol. 143; No. 6; 664-669; 10.1016/0002-9610(82)90032-0
Rothenberg, Ellen (1982) A specific biosynthetic marker for immature thymic lymphoblasts. Active synthesis of thymus-leukemia antigen restricted to proliferating cells; Journal of Experimental Medicine; Vol. 155; No. 1; 140-154; PMCID PMC2186575; 10.1084/jem.155.1.140
Rothenberg, Ellen and Triglia, Dennis (1981) Structure and expression of glycoproteins controlled by the Qa-1^a allele; Immunogenetics; Vol. 14; No. 6; 455-468; 10.1007/BF00350118
Triglia, Dennis and Rothenberg, Ellen V. (1981) "Mature" thymocytes are not glucocorticoid-resistant in vitro; Journal of Immunology; Vol. 127; No. 1; 64-68
Michaelson, James and Rothenberg, Ellen, el al. (1980) Genetic polymorphism of murineβ_2-microglobulin detected biochemically; Immunogenetics; Vol. 11-11; No. 1; 93-95; 10.1007/BF01567773
Rothenberg, Ellen (1980) Expression of Differentiation Antigens in Subpopulations of Mouse Thymocytes: Regulation at the Level of de Novo Synthesis; Cell; Vol. 20; No. 1; 1-9; 10.1016/0092-8674(80)90228-7
Rothenberg, Ellen and Triglia, Dennis (1980) In vitro maintenance of differentiation marker synthesis by subpopulations of mouse thymocytes; Journal of Supramolecular Structure; Vol. 14; No. 3; 371-382; 10.1002/jss.400140310
Rothenberg, E. and Boyser, Edward A. (1979) Synthesis and processing of molecules bearing thymus leukemia antigen; Journal of Experimental Medicine; Vol. 150; No. 4; 777-791; PMCID PMC2185687; 10.1084/jem.150.4.777
Baltimore, D. and Gilboa, E., el al. (1979) Production of a Discrete, Infectious, Double-stranded DNA by Reverse Transcription in Virions of Moloney Murine Leukemia Virus; Cold Spring Harbor Symposia on Quantitative Biology; Vol. 43; No. 0; 869-874; 10.1101/SQB.1979.043.01.093
Donoghue, Daniel J. and Rothenberg, Ellen, el al. (1978) Heteroduplex Analysis of the Nonhomology Region between Moloney MuLV and the Dual Host Range Derivative HIX Virus; Cell; Vol. 14; No. 4; 959-970; 10.1016/0092-8674(78)90350-1
Shields, Anthony and Witte, Owen N., el al. (1978) High frequency of aberrant expression of moloney murine leukemia virus in clonal infections; Cell; Vol. 14; No. 3; 601-609; 10.1016/0092-8674(78)90245-3
Rothenberg, Ellen and Donoghue, Daniel J., el al. (1978) Analysis of a 5' Leader Sequence on Murine Leukemia Virus 21S RNA: Heteroduplex Mapping with Long Reverse Transcriptase Products; Cell; Vol. 13; No. 3; 435-451; 10.1016/0092-8674(78)90318-5
Rothenberg, Ellen and Smotkin, David, el al. (1977) In vitro synthesis of infectious DNA of murine leukaemia virus; Nature; Vol. 269; No. 5624; 122-126; 10.1038/269122a0
Rothenberg, Ellen and Baltimore, David (1977) Increased Length of DNA Made by Virions of Murine Leukemia Virus at Limiting Magnesium Ion Concentration; Journal of Virology; Vol. 21; No. 1; 168-178; PMCID PMC353803
Haseltine, William A. and Kleid, Dennis G., el al. (1976) Ordered transcription of RNA tumor virus genomes; Journal of Molecular Biology; Vol. 106; No. 1; 109-131; 10.1016/0022-2836(76)90303-X
Rothenberg, Ellen and Baltimore, David (1976) Synthesis of Long, Representative DNA Copies of the Murine RNA Tumor Virus Genome; Journal of Virology; Vol. 17; No. 1; 168-174; PMCID PMC515400