Quake, Stephen R.

Combined from CaltechAUTHORS

• Swift, Michael and Horns, Felix, el al. (2023) Lineage tracing reveals fate bias and transcriptional memory in human B cells; Life Science Alliance; Vol. 6; No. 3; Art. No. e202201792; PMCID PMC9840405; 10.26508/lsa.202201792
• Gee, Marvin H. and Han, Arnold, el al. (2018) Antigen Identification for Orphan T Cell Receptors Expressed on Tumor-Infiltrating Lymphocytes; Cell; Vol. 172; No. 3; 549-563; PMCID PMC5786495; 10.1016/j.cell.2017.11.043
• Kim, Soohong and Streets, Aaron M., el al. (2011) High-throughput single-molecule optofluidic analysis; Nature Methods; Vol. 8; No. 3; 242-245; 10.1038/NMETH.1569
• Bao, Xiaoyan Robert and Fraser, Iain D. C., el al. (2010) Variability in G-Protein-Coupled Signaling Studied with Microfluidic Devices; Biophysical Journal; Vol. 99; No. 8; 2414-2222; 10.1016/j.bpj.2010.08.043
• Lee, Cheng-Chung and Snyder, Thomas M., el al. (2010) A microfluidic oligonucleotide synthesizer; Nucleic Acids Research; Vol. 38; No. 8; 2514-2521; 10.1093/nar/gkq092
• Balagaddé, Frederick K. and Song, Hao, el al. (2008) A synthetic Escherichia coli predator–prey ecosystem; Molecular Systems Biology; Vol. 4; Art. No. 187; PMCID PMC2387235; 10.1038/msb.2008.24
• Zhong, Jiang F. and Chen, Yan, el al. (2008) A microfluidic processor for gene expression profiling of single human embryonic stem cells; Lab on a Chip; Vol. 8; No. 1; 68-74; PMCID PMC4110104; 10.1039/b712116d
• Anderson, Megan J. and DeLaBarre, Byron, el al. (2007) Crystal Structure of a HyperactiveEscherichia coliGlycerol Kinase Mutant Gly230 → Asp Obtained Using Microfluidic Crystallization Devices; Biochemistry; Vol. 46; No. 19; 5722-5731; 10.1021/bi700096p
• Kartalov, Emil P. and Scherer, Axel, el al. (2007) Experimentally validated quantitative linear model for the device physics of elastomeric microfluidic valves; Journal of Applied Physics; Vol. 101; No. 6; Art. No. 064505; 10.1063/1.2511688
• Maerkl, Sebastian J. and Quake, Stephen R. (2007) A Systems Approach to Measuring the Binding Energy Landscapes of Transcription Factors; Science; Vol. 315; No. 5809; 233-237; 10.1126/science.1131007
• Ma, Ziyang and Gerton, Jordan M., el al. (2006) Fluorescence Near-Field Microscopy of DNA at Sub-10 nm Resolution; Physical Review Letters; Vol. 97; No. 26; Art. No. 260801; 10.1103/PhysRevLett.97.260801
• Ottesen, Elizabeth A. and Hong, Jong Wook, el al. (2006) Microfluidic Digital PCR Enables Multigene Analysis of Individual Environmental Bacteria; Science; Vol. 314; No. 5804; 1464-1467; 10.1126/science.1131370
• Warren, Luigi and Bryder, David, el al. (2006) Transcription factor profiling in individual hematopoietic progenitors by digital RT-PCR; Proceedings of the National Academy of Sciences of the United States of America; Vol. 103; No. 47; 17807-17812; PMCID PMC1693828; 10.1073/pnas.0608512103
• Anderson, Megan J. and Hansen, Carl L., el al. (2006) Phase knowledge enables rational screens for protein crystallization; Proceedings of the National Academy of Sciences of the United States of America; Vol. 103; No. 45; 16746-16751; PMCID PMC1636526; 10.1073/pnas.0605293103
• Psaltis, Demetri and Quake, Stephen R., el al. (2006) Developing optofluidic technology through the fusion of microfluidics and optics; Nature; Vol. 442; No. 7101; 381-386; 10.1038/nature05060
• Liu, Jian and Williams, Brian A., el al. (2006) Enhanced Signals and Fast Nucleic Acid Hybridization By Microfluidic Chaotic Mixing; Angewandte Chemie International Edition; Vol. 45; No. 22; 3618-3623; 10.1002/anie.200503830
• Hong, Jong Wook and Chen, Yan, el al. (2006) Molecular biology on a microfluidic chip; Journal of Physics: Condensed Matter; Vol. 18; No. 18; S691-S701; 10.1088/0953-8984/18/18/S14
• Marcus, Joshua S. and Anderson, W. French, el al. (2006) Microfluidic Single-Cell mRNA Isolation and Analysis; Analytical Chemistry; Vol. 78; No. 9; 3084-3089; 10.1021/ac0519460
• Phillips, Rob and Quake, Stephen R. (2006) The Biological Frontier of Physics; Physics Today; Vol. 59; No. 5; 38-43
• Gambin, Yann and Legrand, Olivier, el al. (2006) Microfabricated rubber microscope using soft solid immersion lenses; Applied Physics Letters; Vol. 88; No. 17; Art. No. 174102; 10.1063/1.2194477
• Hansen, Carl L. and Classen, Scott, el al. (2006) A Microfluidic Device for Kinetic Optimization of Protein Crystallization and In Situ Structure Determination; Journal of the American Chemical Society; Vol. 128; No. 10; 3142-3143; 10.1021/ja0576637
• Marcus, Joshua S. and Anderson, W. French, el al. (2006) Parallel Picoliter RT-PCR Assays Using Microfluidics; Analytical Chemistry; Vol. 78; No. 3; 956-958; 10.1021/ac0513865
• Lee, Chung-Cheng and Sui, Guodong, el al. (2005) Multistep Synthesis of a Radiolabeled Imaging Probe Using Integrated Microfluidics; Science; Vol. 310; No. 5755; 1793-1796; 10.1126/science.1118919
• Adams, M. L. and Johnston, M. L., el al. (2005) Polydimethylsiloxane based microfluidic diode; Journal of Micromechanics and Microengineering; Vol. 15; No. 8; 1517-1521; 10.1088/0960-1317/15/8/020
• Balagaddé, Frederick K. and You, Lingchong, el al. (2005) Long-Term Monitoring of Bacteria Undergoing Programmed Population Control in a Microchemostat; Science; Vol. 309; No. 5731; 137-140; 10.1126/science.1109173
• Squires, Todd M. and Quake, Stephen R. (2005) Microfluidics: Fluid physics at the nanoliter scale; Reviews of Modern Physics; Vol. 77; No. 3; 977-1026; 10.1103/RevModPhys.77.977
• Erickson, David and Li, Baiyang, el al. (2005) Spectrographic Microfluidic Memory; ISBN 0-7918-4185-5; 2005 Proceedings of the 3rd International Conference on Microchannels and Minichannels; 563-568; 10.1115/ICMM2005-75205
• Gerton, Jordan M. and Wade, Lawrence A., el al. (2004) Tip-Enhanced Fluorescence Microscopy at 10 Nanometer Resolution; Physical Review Letters; Vol. 93; No. 18; Art. No. 180801; 10.1103/PhysRevLett.93.180801
• Hansen, Carl L. and Sommer, Morten O. A., el al. (2004) Systematic investigation of protein phase behavior with a microfluidic formulator; Proceedings of the National Academy of Sciences of the United States of America; Vol. 101; No. 40; 14431-14436; PMCID PMC521965; 10.1073/pnas.0405847101
• Vyawahare, Saurabh and Eyal, Shulamit, el al. (2004) Nanometer-scale Fluorescence Resonance Optical Waveguides; Nano Letters; Vol. 4; No. 6; 1035-1039; 10.1021/nl049660i
• Kartalov, Emil P. and Quake, Stephen R. (2004) Microfluidic device reads up to four consecutive base pairs in DNA sequencing-by-synthesis; Nucleic Acids Research; Vol. 32; No. 9; 2873-2879; 10.1093/nar/gkh613
• Hong, Jong Wook and Studer, Vincent, el al. (2004) A nanoliter-scale nucleic acid processor with parallel architecture; Nature Biotechnology; Vol. 22; No. 4; 435-439; 10.1038/nbt951
• Wade, Lawrence A. and Shapiro, Ian R., el al. (2004) Correlating AFM Probe Morphology to Image Resolution for Single-Wall Carbon Nanotube Tips; Nano Letters; Vol. 4; No. 4; 725-731; 10.1021/nl049976q
• Groisman, Alex and Quake, Stephen R. (2004) A Microfluidic Rectifier: Anisotropic Flow Resistance at Low Reynolds Numbers; Physical Review Letters; Vol. 92; No. 9; Art. No. 094501; 10.1103/PhysRevLett.92.094501
• Rolland, Jason P. and van Dam, R. Michael, el al. (2004) Solvent-Resistant Photocurable "Liquid Teflon" for Microfluidic Device Fabrication; Journal of the American Chemical Society; Vol. 126; No. 8; 2322-2323; 10.1021/ja031657y
• Studer, Vincent and Hang, Giao, el al. (2004) Scaling properties of a low-actuation pressure microfluidic valve; Journal of Applied Physics; Vol. 95; No. 1; 393-398; 10.1063/1.1629781
• Bao, Xiaoyan R. and Lee, Heun Jin, el al. (2003) Behavior of Complex Knots in Single DNA Molecules; Physical Review Letters; Vol. 91; No. 26; Art. No. 265506; 10.1103/PhysRevLett.91.265506
• Hong, Jong Wook and Quake, Stephen R. (2003) Integrated nanoliter systems; Nature Biotechnology; Vol. 21; No. 10; 1179-1183; 10.1038/nbt871
• Liu, Jian and Hansen, Carl L., el al. (2003) Solving the "World-to-Chip" Interface Problem with a Microfluidic Matrix; Analytical Chemistry; Vol. 75; No. 18; 4718-4723; 10.1021/ac0346407
• Groisman, Alex and Enzelberger, Markus, el al. (2003) Microfluidic Memory and Control Devices; Science; Vol. 300; No. 5621; 955-958; 10.1126/science.1083694
• Braslavsky, Ido and Hebert, Benedict, el al. (2003) Sequence information can be obtained from single DNA molecules; Proceedings of the National Academy of Sciences of the United States of America; Vol. 100; No. 7; 3960-3964; PMCID PMC153030; 10.1073/pnas.0230489100
• Hansen, Carl L. and Skordalakes, Emmanuel, el al. (2002) A robust and scalable microfluidic metering method that allows protein crystal growth by free interface diffusion; Proceedings of the National Academy of Sciences of the United States of America; Vol. 99; No. 26; 16531-16536; PMCID PMC139178; 10.1073/pnas.262485199
• Chiu, Chi-Sung and Jensen, Kimmo, el al. (2002) Number, Density, and Surface/Cytoplasmic Distribution of GABA Transporters at Presynaptic Structures of Knock-In Mice Carrying GABA Transporter Subtype 1–Green Fluorescent Protein Fusions; Journal of Neuroscience; Vol. 22; No. 23; 10251-10266; PMCID PMC6758747; 10.1523/jneurosci.22-23-10251.2002
• Brody, James P. and Williams, Brian A., el al. (2002) Significance and statistical errors in the analysis of DNA microarray data; Proceedings of the National Academy of Sciences of the United States of America; Vol. 99; No. 20; 12975-12978; PMCID PMC130571; 10.1073/pnas.162468199
• Thompson, H. Garrett R. and Harris, Joseph W., el al. (2002) Identification and Confirmation of a Module of Coexpressed Genes; Genome Research; Vol. 12; No. 10; 1517-1522; PMCID PMC187523; 10.1101/gr.418402
• Thorsen, Todd and Maerkl, Sebastian J., el al. (2002) Microfluidic Large-Scale Integration; Science; Vol. 298; No. 5593; 580-584; 10.1126/science.1076996
• Adams, Mark L. and DeRose, Guy A., el al. (2002) Fundamental approach for optoelectronic and microfluidic integration for miniaturizing spectroscopic devices; ISBN 9780819443861; Functional Integration of Opto-Electro-Mechanical Devices and Systems II; 1-6; 10.1117/12.469818
• Fu, Anne Y. and Chou, Hou-Pu, el al. (2002) An Integrated Microfabricated Cell Sorter; Analytical Chemistry; Vol. 74; No. 11; 2451-2457; 10.1021/ac0255330
• Adams, Mark L. and Quake, Stephen, el al. (2002) On-chip absorption and fluorescence spectroscopy with polydimethylsiloxane (PDMS) microfluidic flow channels; ISBN 0780374800; 2nd Annual International IEEE-EMBS Special Topic Conference on Microtechnologies in Medicine and Biology. Proceedings; 369-373; 10.1109/mmb.2002.1002348
• Chou, Hou-Pu and Unger, Marc A., el al. (2001) A Microfabricated Rotary Pump; Biomedical Microdevices; Vol. 3; No. 4; 323-330; 10.1023/a:1012412916446
• Thorsen, Todd and Roberts, Richard W., el al. (2001) Dynamic Pattern Formation in a Vesicle-Generating Microfluidic Device; Physical Review Letters; Vol. 86; No. 18; 4163-4166; 10.1103/PhysRevLett.86.4163
• Chiu, Chi-Sung and Kartalov, Emil, el al. (2001) Single-molecule measurements calibrate green fluorescent protein surface densities on transparent beads for use with 'knock-in' animals and other expression systems; Journal of Neuroscience Methods; Vol. 105; No. 1; 55-63; 10.1016/s0165-0270(00)00354-x
• Quake, Stephen R. and Scherer, Axel (2000) From Micro- to Nanofabrication with Soft Materials; Science; Vol. 290; No. 5496; 1536-1540; 10.1126/science.290.5496.1536
• Meiners, Jens-Christian and Quake, Stephen R. (2000) Femtonewton Force Spectroscopy of Single Extended DNA Molecules; Physical Review Letters; Vol. 84; No. 21; 5014-5017; 10.1103/PhysRevLett.84.5014
• Quake, Stephen R. and Yang, T. J., el al. (2000) Fluorescence apertureless near-field microscope: a step toward imaging information in DNA; ISBN 9780819435385; Scanning and Force Microscopies for Biomedical Applications II; 199-204; 10.1117/12.383349
• Unger, Marc A. and Chou, Hou-Pu, el al. (2000) Monolithic Microfabricated Valves and Pumps by Multilayer Soft Lithography; Science; Vol. 288; No. 5463; 113-116; 10.1126/science.288.5463.113
• Yang, T. J. and Lessard, Guillaume A., el al. (2000) An apertureless near-field microscope for fluorescence imaging; Applied Physics Letters; Vol. 76; No. 3; 378-380
• Fu, Anne Y. and Spence, Charles, el al. (1999) A microfabricated fluorescence-activated cell sorter; Nature Biotechnology; Vol. 17; No. 11; 1109-1111; 10.1038/15095
• Unger, M. and Kartalov, E., el al. (1999) Single-Molecule Fluorescence Observed with Mercury Lamp Illumination; BioTechniques; Vol. 27; No. 5; 1008-1014; 10.2144/99275rr01
• Lessard, Guillaume A. and Yang, T. J., el al. (1999) Scanning apertureless fluorescence microscope; ISBN 9780819430779; Scanning and Force Microscopies for Biomedical Applications; 158-165; 10.1117/12.350630
• Hatfield, John William and Quake, Stephen R. (1999) Dynamic Properties of an Extended Polymer in Solution; Physical Review Letters; Vol. 82; No. 17; 3548-3551; 10.1103/PhysRevLett.82.3548
• Meiners, Jens-Christian and Quake, Stephen R. (1999) Direct Measurement of Hydrodynamic Cross Correlations between Two Particles in an External Potential; Physical Review Letters; Vol. 82; No. 10; 2211-2214; 10.1103/PhysRevLett.82.2211
• Chou, Hou-Pu and Spence, Charles, el al. (1999) A microfabricated device for sizing and sorting DNA molecules; Proceedings of the National Academy of Sciences of the United States of America; Vol. 96; No. 1; 11-13; PMCID PMC15083
• Brody, James P. and Quake, Stephen R. (1999) A self-assembled microlensing rotational probe; Applied Physics Letters; Vol. 74; No. 1; 144-146; 10.1063/1.122977
• Chou, Hou-Pu and Spence, Charles, el al. (1998) Microfabricated devices for sizing DNA and sorting cells; ISBN 0819426970; Micro- and Nanofabricated Structures and Devices for Biomedical Environmental Applications; 181-187; 10.1117/12.304378
• Quake, Stephen R. and Babcock, Hazen, el al. (1997) The dynamics of partially extended single molecules of DNA; Nature; Vol. 388; No. 6638; 151-154; 10.1038/40588
• Quake, Stephen R. (1995) Fast Monte Carlo algorithms for knotted polymers; Physical Review E; Vol. 52; No. 1; 1176-1180; 10.1103/PhysRevE.52.1176
• Quake, Stephen R. (1994) Topological Effects of Knots in Polymers; Physical Review Letters; Vol. 73; No. 24; 3317-3320; 10.1103/PhysRevLett.73.3317
• Quake, Stephen R. (1994) The Zimm model applied to extended single polymers; Journal of Chemical Physics; Vol. 101; No. 5; 4307-4311; 10.1063/1.46748