Phillips, Rob

Combined from CaltechTHESIS committee

• Narayanan, Aditi Kalpagam (2025) Diversity, Activity, and Adaptations of Phage Communities in Anoxic Hydrocarbon-Rich Marine Sediments; 10.7907/v5x8-7447
• Jiang, Jialong (2024) Revealing Regulatory Network Organization Through Single-Cell Perturbation Profiling and Maximum Entropy Models; 10.7907/5zta-9818
• Ciemniecki, John Alan (2024) The Bioenergetics of a Low-Power, Phenazine-Dependent Maintenance Metabolism in Pseudomonas aeruginosa; 10.7907/n992-ey51
• Ni, Yu-Li (2023) Developing Tools for Neurobiology: The Retina as a Neuropharmacology Testbed & Electrode Pooling to Boost Extracellular Array Recording; 10.7907/jeh6-w316
• Meyerowitz, Joseph Toshiro (2023) Engineering and Rapid Prototyping for Biology in Extreme Conditions; 10.7907/9gbb-n831
• Dutka, Przemysław (2023) Cryo-ET Reveals Molecular Details of Multi-Megadalton Bacterial Protein Complexes; 10.7907/87jm-7v06
• Ding, Xiaozhe (2023) Computation-Aided Protein Engineering for Targeted Therapeutic Delivery; 10.7907/7n15-3076
• Hirokawa, Soichi (2023) Dynamics of Protein-Mediated Polymer Coupling and their Implications in Antibody Production and Emergent Patterning; 10.7907/fpmm-a552
• Razo-Mejia, Manuel (2022) Physical Biology of Cellular Information Processing; 10.7907/kpc2-b345
• Ortiz-Muñoz, Andrés (2022) Combinatorics and Stochasticity for Chemical Reaction Networks; 10.7907/s9mc-3d59
• Banks, Rachel A. (2022) Experimental and Theoretical Studies of Non-Equilibrium Systems: Motor-Microtubule Assemblies and the Human-Earth System; 10.7907/5ee6-j454
• Gong, Mengsha (2022) Remodeling Jellyfish; 10.7907/pfn8-aw15
• Beeler, Suzannah Michelle (2022) Deciphering Regulation in Escherichia coli: From Genes to Genomes; 10.7907/p3rg-m937
• Poole, William (2022) Compilation and Inference with Chemical Reaction Networks; 10.7907/x3qc-je74
• Galstyan, Vahe (2022) Studies in Physical Biology: Exploring Allosteric Regulation, Enzymatic Error Correction, and Cytoskeletal Self-Organization Using Theory and Modeling; 10.7907/1fzr-1240
• Xiao, Fangzhou (2022) Biocontrol of Biomolecular Systems: Polyhedral Constraints on Binding's Regulation of Catalysis from Biocircuits to Metabolism; 10.7907/rtwq-v497
• Wu, Di (2021) Biomolecular Tools for Noninvasive Imaging and Manipulation of Engineered Cells; 10.7907/dt22-nv14
• Ross, Tyler David (2021) Guiding Self-Organization in Active Matter with Spatiotemporal Boundary Conditions; 10.7907/q85h-j730
• Klumpe, Heidi Elizabeth (2021) Context-Dependent, Combinatorial Logic of BMP Signaling; 10.7907/3vv4-bk06
• Sawyer, Daniel Patrick (2021) Enhanced Noninvasive Imaging of Acoustic Biomolecules; 10.7907/p52e-qv56
• Morrison, Muir (2021) Statistical Mechanics of Problems in Transcription Regulation; 10.7907/d042-rp26
• Neumann, Adam Patrick (2020) Towards Single Molecule Imaging Using Nanoelectromechanical Systems; 10.7907/n4ap-7h91
• Ireland, William Thornton (2020) A Quantitative and High-Throughput Approach to Gene Regulation in Escherichia coli; 10.7907/0sk3-hd69
• Chure, Griffin Daniel (2020) The Molecular Biophysics of Evolutionary and Physiological Adaptation; 10.7907/q8h6-xr92
• Ramesh, Pradeep (2019) Imaging and Control of Engineered Cells using Magnetic Fields; 10.7907/KY00-7Y74
• Einav, Tal (2019) Taming the Molecular Dance: Harnessing Statistical Mechanics to Quantitatively Characterize Allosteric Systems; 10.7907/S4CV-T162
• Adalian, Dvin Artashes-Boghos (2019) Development and Dynamics of Microfabricated Enzymatic Biosensors; 10.7907/7GHS-NX49
• Frick, Christopher Lee (2019) How Single Cells Sense Smad3 Signal; 10.7907/WNM4-4R58
• Barnes, Stephanie Loos (2018) Decoding the Regulatory Genome: Quantitative Analysis of Transcriptional Regulation in Escherichia coli; 10.7907/D13T-7868
• Nandagopal, Nagarajan (2018) New Capabilities of the Notch Signaling Pathway; 10.7907/Z98050TB
• Belliveau, Nathan Maurice (2018) Quantitative Dissection of the Allosteric and Sequence-Dependent Regulatory Genome in E. coli; 10.7907/Z9DN438T
• Mahmoudabadi, Gita (2018) Virology By The Numbers: A Quantitative Exploration of Viral Energetics, Genomics, and Ecology; 10.7907/Z9Q81B91
• Takatori, Sho C. (2017) Forces, Stresses, and the (Thermo?) Dynamics of Active Matter: The Swim Pressure; 10.7907/Z9RN35WF
• Erkenbrack, Eric Matthew (2016) Evolution of Developmental Gene Regulatory Networks in Echinoids; 10.7907/Z95X26WZ
• Owens, Gwen Ellen (2016) Biochemical and Biophysical Characterization of Huntingtin; 10.7907/Z9TM7835
• Szablowski, Jerzy Olgierd (2015) Biological Activity of Pyrrole-Imidazole Polyamides in vivo; 10.7907/Z9Q23X6D
• Bagert, John David (2015) Quantitative, Time-Resolved Proteomic Analysis Using Bio-Orthogonal Non-Canonical Amino Acid Tagging; 10.7907/Z9QC01D9
• Chen, Yi-Ju (2015) The Mechanical Genome in Regulation and Infection; 10.7907/Z9PC308X
• Trivedi, Vikas (2015) From Molecules to Organs : Microscopy and Multi-Scale Nature of Development; 10.7907/Z9SX6B59
• Kreamer, Naomi N. (2015) Ferrous Iron Sensing and Responding in Pseudomonas aeruginosa; 10.7907/Z9DN4324
• Asimakopoulos, Aristotelis (2015) Macroscopically Dissipative Systems with Underlying Microscopic Dynamics : Properties and Limits of Measurement; 10.7907/Z9V40S4N
• Rydenfelt, Mattias Sven Olof (2014) The Combinatorics of Transcriptional Regulation; 10.7907/PNX5-Y638
• Lovely, Geoffrey A. (2014) Biophysics of V(D)J Recombination and Genome Packaging: In Singulo Studies on RAG, HMGB1, and TFAM; 10.7907/Z9W9573H
• Boney, Evans T. D. (2014) Vibrational Pooling and Constrained Equilibration on Surfaces; 10.7907/JM2J-XX84
• Jones, Daniel Lawson III (2014) Sequence-Function Relationships in E. coli Transcriptional Regulation; 10.7907/4J7V-WD59
• Su, Tsu-Te Judith (2014) Label-Free Detection of Single Molecule Using Microtoroid Optical Resonators; 10.7907/EHWP-DH17
• Lakhanpal, Amit (2014) Experimental and Theoretical Studies of Notch Signaling-Mediated Spatial Pattern; 10.7907/RGPT-RS80
• Kelber, Scott Ian (2013) Single Particle Mass Spectrometry and Inertial Imaging with Nanomechanical Systems; 10.7907/Z9PN93MP
• Bialecka-Fornal, Maja I. (2013) Single-Cell Analysis of the Physiology of Mechanosensation in Bacteria; 10.7907/7SRD-WS94
• Smith, Matthew Alexander (2013) Non-Contiguous Protein Recombination; 10.7907/4B8E-ZH08
• Giang, Ha Thanh (2013) Coupled Effects of Mechanics, Geometry, and Chemistry on Bio-Membrane Behavior; 10.7907/BVSK-K782
• Venturelli, Ophelia Shalini (2013) Role of Feedback and Dynamics of a Gene Regulatory Network; 10.7907/WGK3-Y839
• Dempsey, William P. (2012) Establishing a Genetic and Exogenous Toolbox for Studying Multiple Stages of Vertebrate Development in vivo; 10.7907/Z98S4MVS
• Young, Jonathan Wan (2012) Architecture, Dynamics, and Function of the General Stress Response System in B. subtilis; 10.7907/93MF-Q808
• Levine, Joseph H. (2012) Genetic Regulatory Circuit Dynamics: Analysis and Synthesis; 10.7907/35A7-K421
• Suloway, Christian J. M. (2012) Structural Insights into Tail-Anchored Protein Targeting by Get3; 10.7907/AGES-WJ42
• Johnson, Stephanie Lynn (2012) DNA Mechanics and Transcriptional Regulation in the E. coli lac Operon; 10.7907/W40T-PD39
• Yang, Fan (2011) Biochemical and Biophysical Characterizations of Immunoglobulin Superfamily Receptors Neogenin and L1; 10.7907/Q8ET-K632
• Yang, Jennifer Chuen-Hsien (2011) Following Motion of Early Heart Development at the Cellular Level Using Confocal Microscopy in Transgenic Quail Embryos; 10.7907/Y0YB-2312
• Hariadi, Rizal Fajar (2011) Non-Equilibrium Dynamics of DNA Nanotubes ; 10.7907/6GQW-YG26
• Ernst, Russell J. (2011) The Biological Activity of Rhodium Metalloinsertors; 10.7907/3K6K-JX55
• Van Valen, David Ashley (2011) Case Studies in Quantitative Biology: Biochemistry on a Leash and a Single-Molecule Hershey-Chase Experiment; 10.7907/FJW3-G615
• Tadmor, Arbel David (2011) Phage-Host Interaction in Nature; 10.7907/68Q5-D532
• Garcia, Hernan G. (2011) Transcriptional Regulation by the Numbers; 10.7907/63RG-8P84
• Garcia, Hernan G. (2011) Transcriptional Regulation by the Numbers; 10.7907/63RG-8P84
• Liu, Yu (2010) Biochemical Reactions in Confined Space; 10.7907/W9H8-8T44
• Choi, Harry Ming Tak (2010) Programmable In Situ Amplification for Multiplexed Bioimaging; 10.7907/K4A3-1K41
• Bower, Kiowa San (2010) Chemical-Scale Studies of the 5-HT₃ and D2 Dopamine Receptors ; 10.7907/17AK-6J11
• Wu, David Dah-wei (2010) Biomechanical Information Transfer: Maximum Caliber, λ Genome Ejection Dynamics, and the Formation of Otoliths in Zebrafish; 10.7907/X454-MV52
• McDowell, Emily Jayne (2010) Low Optical Signal Detection in Biological Materials: SNR Considerations and Novel Techniques; 10.7907/7Q7B-1E27
• Ursell, Tristan Scott (2009) Stretching the Definition of a Lipid Bilayer: Elasticity's Role in Protein and Lipid Organization; 10.7907/Q0R5-K353
• Axelrod, Blake Waters (2009) Single Cell Pico Force Microscopy: A Novel Tool for High Resolution Measurement of Cell Forces; 10.7907/ESGS-Z942
• Ursell, Tristan Scott (2009) Stretching the Definition of a Lipid Bilayer: Elasticity's Role in Protein and Lipid Organization; 10.7907/Q0R5-K353
• Leong, Peter Anthony (2009) Computational Challenges in High-Resolution Cryo-Electron Microscopy; 10.7907/GJKS-2P80
• Peterson, Eric Lee (2008) A Random Walk in Physical Biology; 10.7907/X00X-VC27
• Dunlop, Mary Julia (2008) Dynamics and Correlated Noise in Gene Regulation; 10.7907/AC8V-6S05
• Sweatlock, Luke A. (2008) Plasmonics: Numerical Methods and Device Applications; 10.7907/8GPE-SB31
• Sweatlock, Luke A. (2008) Plasmonics: Numerical Methods and Device Applications; 10.7907/8GPE-SB31
• Ayalasomayajula, Meher Kiran Prakash (2008) Theoretical Studies of Single Molecule Biophysical Systems and Photochemical Ensembles; 10.7907/5D2K-7H81
• Han, Lin (2008) In vitro DNA Mechanics in Gene Regulation: One Molecule at a Time; 10.7907/7573-A922
• Han, Lin (2008) In vitro DNA Mechanics in Gene Regulation: One Molecule at a Time; 10.7907/7573-A922
• Zhang, Cheng-Zhong (2008) Interplay Between Long-Range And Short-Range Interactions In Polymer Self-Assembly And Cell Adhesion; 10.7907/GCH8-4A59
• Lee, Wonhee (2008) Microfluidic Chip Calorimeters for Biological Applications; 10.7907/W8E0-4W22
• Lee, Wonhee (2008) Microfluidic Chip Calorimeters for Biological Applications; 10.7907/W8E0-4W22
• Peterson, Eric Lee (2008) A Random Walk in Physical Biology; 10.7907/X00X-VC27
• Grosberg, Anna (2008) A Bioinspired Computational Model of Cardiac Mechanics: Pathology and Development; 10.7907/THMJ-C355
• Seitaridou, Effrosyni (2008) Non-Equilibrium Dynamics: Diffusion in Small Numbers and Ribosomal Self-Assembly; 10.7907/X12R-DA46
• Balagaddé, Frederick Kiguli (2007) Microfluidic Technologies for Continuous Culture and Genetic Circuit Characterization; 10.7907/NJ5Z-XV43
• Bao, Xiaoyan Robert (2007) Lost in a Crowd: Observations of Single DNA Knots and Single Mammalian Cells; 10.7907/F2XV-MC44
• Fingler, Jeffrey Paul (2007) Motion Contrast Using Optical Coherence Tomography; 10.7907/8W4X-Z041
• Grayson, Paul Daniel (2007) The DNA Ejection Process in Bacteriophage λ; 10.7907/A7ED-4044
• Cowan, Lisa (2007) Superprotonic Solid Acid Phase Transitions and Stability; 10.7907/30RE-XG95
• Grayson, Paul Daniel (2007) The DNA Ejection Process in Bacteriophage λ; 10.7907/A7ED-4044
• Bao, Xiaoyan Robert (2007) Lost in a Crowd: Observations of Single DNA Knots and Single Mammalian Cells; 10.7907/F2XV-MC44
• Meyer, Michelle Margaret (2006) Exploring Protein Sequence Space Using Computationally Directed Recombination; 10.7907/YJPE-CD11
• Inamdar, Mandar Mukund (2006) Dissipative Nanomechanics; 10.7907/P5K9-BD68
• Arlett, Jessica Lynn (2006) Properties of Piezoresistive Silicon Nano-scale Cantilevers with Applications to BioNEMS; 10.7907/1CRV-VC02
• van Dam, Robert Michael (2006) Solvent-Resistant Elastomeric Microfluidic Devices and Applications; 10.7907/4EJF-1V78
• van Dam, Robert Michael (2006) Solvent-Resistant Elastomeric Microfluidic Devices and Applications; 10.7907/4EJF-1V78
• Hall, Spencer Eugene (2005) Development of a Structure Prediction Method for G-Protein Coupled Receptors; 10.7907/JN28-5F55
• Spakowitz, Andrew James (2005) Semiflexible Polymers: Fundamental Theory and Applications in DNA Packaging; 10.7907/GGY2-SZ67
• Wiggins, Paul Alexander (2005) Biology Beyond Biochemistry:The Mechanics of Life; 10.7907/015B-JA11
• Shapovalov, George G. (2005) Mechanosensitive Channels of Bacteria: Structure and Function. Electrophysiology as a High Resolution Technique of Ion Channel Study; 10.7907/XZ69-9A14
• Wiggins, Paul Alexander (2005) Biology Beyond Biochemistry:The Mechanics of Life; 10.7907/015B-JA11
• Fon, Warren Chung Wah (2004) Thermal Properties of Nano- and Microstructures; 10.7907/FK4H-CV52
• Hansen, Carl Lars Genghis (2004) Microfluidic Technologies for Structural Biology; 10.7907/N9T3-7114
• Huang, Xue Ming Henry (2004) Ultrahigh and Microwave Frequency Nanomechanical Systems; 10.7907/0FDC-0R66
• Huang, Xue Ming Henry (2004) Ultrahigh and Microwave Frequency Nanomechanical Systems; 10.7907/0FDC-0R66
• Fon, Warren Chung Wah (2004) Thermal Properties of Nano- and Microstructures; 10.7907/FK4H-CV52
• Cooper, Kenneth Brian (2003) New Phases of Two-Dimensional Electrons in Excited Landau Levels; 10.7907/WAE0-7Z77
• Cooper, Kenneth Brian (2003) New Phases of Two-Dimensional Electrons in Excited Landau Levels; 10.7907/WAE0-7Z77
• Hanan, Jay Clarke (2003) Damage Evolution in Uniaxial SiC Fiber Reinforced Ti Matrix Composites; 10.7907/C5GW-WV41
• Hanan, Jay Clarke (2003) Damage Evolution in Uniaxial SiC Fiber Reinforced Ti Matrix Composites; 10.7907/C5GW-WV41
• Bogdanoff, Peter David (2002) The Phonon Entropy of Metals and Alloys: The Effects of Thermal and Chemical Disorder; 10.7907/045G-6426
• González Liñero, Luis (2002) Global Fracture Analysis of Laminated Composite Materials for Aerospace Structures; 10.7907/FCJ8-EW63
• Purohit, Prashant Kishore (2002) Dynamics of Phase Transitions in Strings, Beams and Atomic Chains; 10.7907/DP97-XH80
• Spence, Charles Frederick (2002) Nanobiology: Halting Steps into a Portion of Richard Feynman 's Vision; 10.7907/a3g1-x447
• Bogdanoff, Peter David (2002) The Phonon Entropy of Metals and Alloys: The Effects of Thermal and Chemical Disorder; 10.7907/045G-6426
• González Liñero, Luis (2002) Global Fracture Analysis of Laminated Composite Materials for Aerospace Structures; 10.7907/FCJ8-EW63
• Shu, Yi-Chung (1999) Shape-Memory Effect in Bulk and Thin-Film Polycrystals; 10.7907/4NW5-3Q89
• Shu, Yi-Chung (1999) Shape-Memory Effect in Bulk and Thin-Film Polycrystals; 10.7907/4NW5-3Q89