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statistical alignment and phylogenetic footprinting to detect regulatory
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the optimality of the neighbor-joining algorithm; Algorithms for
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of functional elements in 12 Drosophila genomes using evolutionary
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of genes and genomes on the Drosophila phylogeny; Nature; Vol. 450;
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of gene duplication and intron loss in the ENCODE regions suggest a
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of transposable elements using multiple alignments of related
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of Sciences of the United States of America; Vol. 101; No. 46;
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sequence of the Brown Norway rat yields insights into mammalian
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of Evolutionary Hotspots in the Rodent Genomes; Genome Research;
Vol. 14; No. 4; 574-579; PMCID PMC383301; 10.1101/gr.1967904
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of Multiple Genome Annotations and Alignments With the K-BROWSER;
Genome Research; Vol. 14; No. 4; 716-720; PMCID PMC383318; 10.1101/gr.1957004
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sampling and applications to gene finding and alternative splicing;
Bioinformatics; Vol. 19; No. Suppl 2; ii36-ii41; 10.1093/bioinformatics/btg1057
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numbers of stop signs; Theoretical Computer Science; Vol. 303;
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