(orcid 0000-0003-1647-1918)
Tookmanian, Elise; Junghans, Lisa et al. (2021) Hopanoids confer robustness to physicochemical variability in the niche of the plant symbiont Bradyrhizobium diazoefficiens https://resolver.caltech.edu/CaltechAUTHORS:20210902-193802546
Dar, Daniel; Dar, Nina et al. (2021) Spatial transcriptomics of planktonic and sessile bacterial populations at single-cell resolution Science; Vol. 373; No. 6556; https://doi.org/10.1126/science.abi4882
Jiménez Otero, Fernanda; Chadwick, Grayson L. et al. (2021) Evidence of a Streamlined Extracellular Electron Transfer Pathway from Biofilm Structure, Metabolic Stratification, and Long-Range Electron Transfer Parameters Applied and Environmental Microbiology; Vol. 87; No. 17; https://doi.org/10.1128/aem.00706-21
Tsypin, Lev M.; Newman, Dianne K. (2021) Nitrate Reduction Stimulates and Is Stimulated by Phenazine-1-Carboxylic Acid Oxidation by Citrobacter portucalensis MBL mBio; Vol. 12; No. 4; https://doi.org/10.1128/mBio.02265-21
Tookmanian, Elise M.; Belin, Brittany J. et al. (2021) The role of hopanoids in fortifying rhizobia against a changing climate Environmental Microbiology; Vol. 23; No. 6; https://doi.org/10.1111/1462-2920.15594
Kim, Jane H.; Spero, Melanie et al. (2021) Chlorate And Antibiotic Treatment Dismantle Pseudomonas Aeruginosa Biofilm And Lead To Healing Of Chronic Wounds Wound Repair and Regeneration; Vol. 29; No. 3; In: 2021 Annual Meeting of the Wound Healing Society SAWC-Spring/WHS Joint Meeting, 12-14 May 2021, [Online Only] https://resolver.caltech.edu/CaltechAUTHORS:20210603-082221478
Dahlstrom, Kurt M.; Newman, Dianne K. (2021) Paraburkholderia edwinii protects Aspergillus sp. from phenazines by acting as a toxin sponge https://resolver.caltech.edu/CaltechAUTHORS:20210419-152102811
VanDrisse, Chelsey M.; Lipsh-Sokolik, Rosalie et al. (2021) Computationally designed pyocyanin demethylase acts synergistically with tobramycin to kill recalcitrant Pseudomonas aeruginosa biofilms Proceedings of the National Academy of Sciences of the United States of America; Vol. 118; No. 12; https://resolver.caltech.edu/CaltechAUTHORS:20210316-072135929
Piddini, Eugenia; Shalek, Alex K. et al. (2021) How are methodological developments enabling insights into cell behavior in cellular communities? Cell Systems; Vol. 12; No. 3; https://doi.org/10.1016/j.cels.2021.02.005
Meirelles, Lucas A.; Perry, Elena K. et al. (2021) Bacterial defenses against a natural antibiotic promote collateral resilience to clinical antibiotics PLoS Biology; Vol. 19; No. 3; https://resolver.caltech.edu/CaltechAUTHORS:20200421-132753787
McRose, Darcy L.; Newman, Dianne K. (2021) Redox-active antibiotics enhance phosphorus bioavailability Science; Vol. 371; No. 6533; https://resolver.caltech.edu/CaltechAUTHORS:20210304-154532731
Dar, Daniel; Dar, Nina et al. (2021) In situ single-cell activities of microbial populations revealed by spatial transcriptomics https://resolver.caltech.edu/CaltechAUTHORS:20210226-074209469
Mickol, Rebecca L.; Louyakis, Artemis S. et al. (2021) Draft Genome Sequence of the Free-Living, Iridescent Bacterium Tenacibaculum mesophilum Strain ECR Microbiology Resource Announcements; Vol. 10; No. 1; https://resolver.caltech.edu/CaltechAUTHORS:20210114-164619982
Tsypin, Lev M.; Newman, Dianne K. (2020) Bidirectional redox cycling of phenazine-1-carboxylic acid by Citrobacter portucalensis MBL drives increased nitrate reduction https://resolver.caltech.edu/CaltechAUTHORS:20201124-104632686
Dahlstrom, Kurt M.; McRose, Darcy L. et al. (2020) Keystone metabolites of crop rhizosphere microbiomes Current Biology; Vol. 30; No. 19; https://resolver.caltech.edu/CaltechAUTHORS:20201006-131015350
Dar, Daniel; Thomashow, Linda S. et al. (2020) Global landscape of phenazine biosynthesis and biodegradation reveals species-specific colonization patterns in agricultural soils and crop microbiomes eLife; Vol. 2020; No. 9; https://resolver.caltech.edu/CaltechAUTHORS:20200609-075446759
Saunders, Scott H.; Tse, Edmund C. M. et al. (2020) Extracellular DNA Promotes Efficient Extracellular Electron Transfer by Pyocyanin in Pseudomonas aeruginosa Biofilms Cell; Vol. 182; No. 4; https://resolver.caltech.edu/CaltechAUTHORS:20191213-144717393
Tsypin, Lev M.; Saunders, Scott H. et al. (2020) Draft Genome Sequence of the Redox-Active Enteric Bacterium Citrobacter portucalensis Strain MBL Microbiology Resource Announcements; Vol. 9; No. 32; https://resolver.caltech.edu/CaltechAUTHORS:20200806-153947593
Ciemniecki, John A.; Newman, Dianne K. (2020) The potential for redox-active metabolites (RAMs) to enhance or unlock anaerobic survival metabolisms in aerobes Journal of Bacteriology; Vol. 202; No. 11; https://resolver.caltech.edu/CaltechAUTHORS:20200219-111358713
Gallego-Hernandez, A. L.; DePas, W. H. et al. (2020) Upregulation of virulence genes promotes Vibrio cholerae biofilm hyperinfectivity Proceedings of the National Academy of Sciences of the United States of America; Vol. 117; No. 20; https://resolver.caltech.edu/CaltechAUTHORS:20200504-083728290
Basta, David W.; Angeles-Albores, David et al. (2020) Heat-shock proteases promote survival of Pseudomonas aeruginosa during growth arrest Proceedings of the National Academy of Sciences of the United States of America; Vol. 117; No. 8; https://resolver.caltech.edu/CaltechAUTHORS:20200206-163326208
Glasser, Nathaniel R.; Hunter, Ryan C. et al. (2019) Refinement of metabolite detection in cystic fibrosis sputum reveals heme correlates with lung function decline PLoS ONE; Vol. 14; No. 12; https://resolver.caltech.edu/CaltechAUTHORS:20181128-093526010
Jorth, Peter; Spero, Melanie A. et al. (2019) Quantitative Visualization of Gene Expression in Mucoid and Nonmucoid Pseudomonas aeruginosa Aggregates Reveals Localized Peak Expression of Alginate in the Hypoxic Zone mBio; Vol. 10; No. 6; https://resolver.caltech.edu/CaltechAUTHORS:20190510-105529016
Spero, M. A.; Silveira, C. B. et al. (2019) Chlorate’s Potential as a Pro-Drug for Killing Antibiotic-Tolerant Pathogens in the Cystic Fibrosis Lung Pediatric Pulmonology; Vol. 54; No. S2; In: 33rd Annual North American Cystic Fibrosis Conference, 31 October-2 November 2019, Nashville, TN https://resolver.caltech.edu/CaltechAUTHORS:20190926-131636762
Belin, Brittany J.; Tookmanian, Elise T. et al. (2019) Extended hopanoid loss reduces bacterial motility and surface attachment, and leads to heterogeneity in root nodule growth kinetics in a Bradyrhizobium-Aeschynomene symbiosis Molecular Plant-Microbe Interactions; Vol. 32; No. 10; https://resolver.caltech.edu/CaltechAUTHORS:20181218-110603835
DePas, W.; Bergkessel, M. et al. (2019) Nontuberculous Mycobacterial Aggregation is Regulated by C:N Balance Pediatric Pulmonology; Vol. 54; No. S2; In: 33rd Annual North American Cystic Fibrosis Conference, 31 October-2 November 2019, Nashville, TN https://resolver.caltech.edu/CaltechAUTHORS:20190926-103130771
Ericson, Charles F.; Eisenstein, Fabian et al. (2019) A contractile injection system stimulates tubeworm metamorphosis by translocating a proteinaceous effector eLife; Vol. 8; https://resolver.caltech.edu/CaltechAUTHORS:20190923-092135402
Bergkessel, Megan; Babin, Brett M. et al. (2019) The dormancy-specific regulator, SutA, is intrinsically disordered and modulates transcription initiation in Pseudomonas aeruginosa Molecular Microbiology; Vol. 112; No. 3; https://resolver.caltech.edu/CaltechAUTHORS:20181029-102517113
DePas, William H.; Bergkessel, Megan et al. (2019) Aggregation of nontuberculous mycobacteria is regulated by carbon:nitrogen balance mBio; Vol. 10; No. 4; https://resolver.caltech.edu/CaltechAUTHORS:20190509-154449662
Perry, Elena K.; Newman, Dianne K. (2019) The transcription factors ActR and SoxR differentially affect the phenazine tolerance of Agrobacterium tumefaciens Molecular Microbiology; Vol. 112; No. 1; https://resolver.caltech.edu/CaltechAUTHORS:20190419-100142089
Kee, H. Lynn; Mikheyeva, Irina V. et al. (2019) Draft Genome Sequence of the Iridescent Marine Bacterium Tenacibaculum discolor Strain IMLK18 Microbiology Resource Announcements; Vol. 8; No. 5; https://resolver.caltech.edu/CaltechAUTHORS:20190131-104830799
Neubauer, Cajetan; Sessions, Alex L. et al. (2018) Towards measuring growth rates of pathogens during infections by D_2O-labeling lipidomics Rapid Communications in Mass Spectrometry; Vol. 32; No. 24; https://resolver.caltech.edu/CaltechAUTHORS:20181003-105017642
Meirelles, Lucas A.; Newman, Dianne K. (2018) Both toxic and beneficial effects of pyocyanin contribute to the lifecycle of Pseudomonas aeruginosa Molecular Microbiology; Vol. 110; No. 6; https://resolver.caltech.edu/CaltechAUTHORS:20180924-131756393
Neubauer, Cajetan; Kasi, Ajay S. et al. (2018) Refining the Application of Microbial Lipids as Tracers of Staphylococcus aureus Growth Rates in Cystic Fibrosis Sputum Journal of Bacteriology; Vol. 200; No. 24; https://resolver.caltech.edu/CaltechAUTHORS:20181004-081517527
Saunders, Scott H.; Newman, Dianne K. (2018) Extracellular Electron Transfer Transcends Microbe-Mineral Interactions Cell Host & Microbe; Vol. 24; No. 5; https://resolver.caltech.edu/CaltechAUTHORS:20181114-140802025
Neubauer, Cajetan; Sweredoski, Michael J. et al. (2018) Scanning the isotopic structure of molecules by tandem mass spectrometry International Journal of Mass Spectrometry; Vol. 434; https://resolver.caltech.edu/CaltechAUTHORS:20180816-125733829
Spero, Melanie A.; Newman, Dianne K. (2018) Chlorate Specifically Targets Oxidant-Starved, Antibiotic-Tolerant Populations of Pseudomonas aeruginosa Biofilms mBio; Vol. 9; No. 5; https://resolver.caltech.edu/CaltechAUTHORS:20181004-090829440
Belin, Brittany J.; Tookmanian, Elise T. et al. (2018) Extended hopanoid lipids promote bacterial motility, surface attachment, and root nodule development in the Bradyrhizobium diazoefficiens-Aeschynomene afraspera symbiosis https://resolver.caltech.edu/CaltechAUTHORS:20180927-114224832
Glasser, Nathaniel R.; Oyala, Paul H. et al. (2018) Structural and mechanistic analysis of the arsenate respiratory reductase provides insight into environmental arsenic transformations Proceedings of the National Academy of Sciences of the United States of America; Vol. 115; No. 37; https://resolver.caltech.edu/CaltechAUTHORS:20180813-133514351
Newman, Dianne K. (2018) A personal tribute to Terry Beveridge Canadian Journal of Microbiology; Vol. 64; No. 9; https://resolver.caltech.edu/CaltechAUTHORS:20180910-091617013
Jorth, P.; Spero, M. A. et al. (2018) In situ gene expression analysis of mucoid P. aeruginosa biofilms suggests that alginate expression is restricted to microaerobic regions of the biofilm Pediatric Pulmonology; Vol. 53; No. S2; In: 32nd Annual North American Cystic Fibrosis Conference, 18-20 October 2018, Denver, CO https://resolver.caltech.edu/CaltechAUTHORS:20181009-123252928
Zhalnina, Kateryna; Zengler, Karsten et al. (2018) Need for Laboratory Ecosystems To Unravel the Structures and Functions of Soil Microbial Communities Mediated by Chemistry mBio; Vol. 9; No. 4; https://resolver.caltech.edu/CaltechAUTHORS:20180723-080501925
Belin, Brittany J.; Busset, Nicolas et al. (2018) Hopanoid lipids: from membranes to plant–bacteria interactions Nature Reviews Microbiology; Vol. 16; No. 5; https://resolver.caltech.edu/CaltechAUTHORS:20180221-160552040
Faure, E.; Jorth, P. et al. (2018) Intracellular Persistence of Pseudomonas Aeruginosa in Airway Epithelial Cells and in Cystic Fibrosis Lung American Journal of Respiratory and Critical Care Medicine; Vol. 197; In: International Conference of the American-Thoracic-Society, 18-23 May 2018, San Diego, CA https://resolver.caltech.edu/CaltechAUTHORS:20181206-104542777
Costa, Kyle C.; Moskatel, Leon S. et al. (2018) PhdA catalyzes the first step of phenazine-1-carboxylic acid degradation in Mycobacterium fortuitum Journal of Bacteriology; Vol. 200; No. 10; https://resolver.caltech.edu/CaltechAUTHORS:20180306-084603442
Saunders, Scott H.; Yates, Matthew D. et al. (2018) Probing Phenazine Electron Transfer and Retention in Pseudomonas Aeruginosa Biofilms Biophysical Journal; Vol. 114; No. 3; In: 62nd Annual Meeting of the Biophysical-Society, 17-21 February 2018, San Francisco, CA https://resolver.caltech.edu/CaltechAUTHORS:20180510-091834521
Basta, David W.; Bergkessel, Megan et al. (2017) Identification of Fitness Determinants during Energy-Limited Growth Arrest in Pseudomonas aeruginosa mBio; Vol. 8; No. 6; https://resolver.caltech.edu/CaltechAUTHORS:20171205-204626357
Babin, Brett M.; Atangcho, Lydia et al. (2017) Selective Proteomic Analysis of Antibiotic-Tolerant Cellular Subpopulations in Pseudomonas aeruginosa Biofilms mBio; Vol. 8; No. 5; https://resolver.caltech.edu/CaltechAUTHORS:20171030-071731344
DePas, W.; Bergkessel, M. et al. (2017) Aggregation of Nontuberculous Mycobacteria in Vitro and in Situ Pediatric Pulmonology; Vol. 52; No. S47; In: 31st Annual North American Cystic Fibrosis Conference, 2-4 November 2017, Indianapolis, IN https://resolver.caltech.edu/CaltechAUTHORS:20171012-103413414
Jorth, P.; Newman, D. K. (2017) Clarifying the Intracellular and Extracellular Lifestyles of CF Microbes in Three Dimensions Pediatric Pulmonology; Vol. 52; No. S47; In: 31st Annual North American Cystic Fibrosis Conference, 2-4 November, 2017, Indianapolis, IN https://resolver.caltech.edu/CaltechAUTHORS:20171012-103857991
Bergkessel, M.; Newman, D. K. et al. (2017) SutA is a Global Transcriptional Regulator Operating during Slow Growth in Pseudomonas Aeruginosa Pediatric Pulmonology; Vol. 52; No. S47; In: 31st Annual North American Cystic Fibrosis Conference, 2-4 November 2017, Indianapolis, IN https://resolver.caltech.edu/CaltechAUTHORS:20171012-102706675
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Kasi, Ajay S.; Neubauer, Cajetan et al. (2017) Bacterial Growth Rate In Cystic Fibrosis Pulmonary Exacerbation American Journal of Respiratory and Critical Care Medicine; Vol. 195; In: International Conference of the American-Thoracic-Society (ATS), May 19-24, 2017, Washington, DC https://resolver.caltech.edu/CaltechAUTHORS:20170615-092601345
Glasser, Nathaniel R.; Wang, Benjamin X. et al. (2017) The pyruvate and α-ketoglutarate dehydrogenase complexes of Pseudomonas aeruginosa catalyze pyocyanin and phenazine-1-carboxylic acid reduction via the subunit dihydrolipoamide dehydrogenase Journal of Biological Chemistry; Vol. 292; No. 13; https://resolver.caltech.edu/CaltechAUTHORS:20170213-091715272
Racki, Lisa R.; Tocheva, Elitza I. et al. (2017) Polyphosphate granule biogenesis is temporally and functionally tied to cell cycle exit during starvation in Pseudomonas aeruginosa Proceedings of the National Academy of Sciences of the United States of America; Vol. 114; No. 12; https://resolver.caltech.edu/CaltechAUTHORS:20170306-140446676
Costa, Kyle C.; Glasser, Nathaniel R. et al. (2017) Pyocyanin degradation by a tautomerizing demethylase inhibits Pseudomonas aeruginosa biofilms Science; Vol. 355; No. 6321; https://resolver.caltech.edu/CaltechAUTHORS:20161208-131717229
Ricci, J. N.; Morton, R. et al. (2017) Hopanoids play a role in stress tolerance and nutrient storage in the cyanobacterium Nostoc punctiforme Geobiology; Vol. 15; No. 1; https://resolver.caltech.edu/CaltechAUTHORS:20160822-074307063
Newman, D. K. (2016) Primary functions for "secondary" metabolites in microbial communities Molecular Biology of the Cell; Vol. 27; No. 25; In: 2016 American Society for Biochemistry and Molecular Biology Annual Meeting, 3-7 December 2016, San Francisco, CA https://resolver.caltech.edu/CaltechAUTHORS:20170310-155640184
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Newman, Dianne (2016) Pathogen Growth Rates in CF Sputum are Slow and Heterogeneous: Implications for Research and Treatment Strategies Pediatric Pulmonology; Vol. 51; No. S45; In: 30th Annual North American Cystic Fibrosis Conference, October 27-29, 2016, Orlando, FL https://resolver.caltech.edu/CaltechAUTHORS:20161111-085149507
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Shikuma, Nicholas J.; Antoshechkin, Igor et al. (2016) Stepwise metamorphosis of the tubeworm Hydroides elegans is mediated by a bacterial inducer and MAPK signaling Proceedings of the National Academy of Sciences of the United States of America; Vol. 113; No. 36; https://resolver.caltech.edu/CaltechAUTHORS:20160823-074209373
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Newman, Dianne K.; Neubauer, Cajetan et al. (2016) Cellular and Molecular Biological Approaches to Interpreting Ancient Biomarkers Annual Review of Earth and Planetary Sciences; Vol. 44; https://resolver.caltech.edu/CaltechAUTHORS:20160531-084725317
Babin, Brett M.; Bergkessel, Megan et al. (2016) SutA is a bacterial transcription factor expressed during slow growth in Pseudomonas aeruginosa Proceedings of the National Academy of Sciences of the United States of America; Vol. 113; No. 5; https://resolver.caltech.edu/CaltechAUTHORS:20160120-081453238
Kopf, Sebastian H.; Sessions, Alex L. et al. (2016) Trace incorporation of heavy water reveals slow and heterogeneous pathogen growth rates in cystic fibrosis sputum Proceedings of the National Academy of Sciences of the United States of America; Vol. 113; No. 2; https://resolver.caltech.edu/CaltechAUTHORS:20160104-065151473
Kreamer, Naomi N.; Phillips, Rob et al. (2015) Predicting the impact of promoter variability on regulatory outputs Scientific Reports; Vol. 5; https://resolver.caltech.edu/CaltechAUTHORS:20160106-065143620
Mariita, Richard M.; Bhatnagar, Srijak et al. (2015) Complete Genome Sequence of Curtobacterium sp. Strain MR_MD2014, Isolated from Topsoil in Woods Hole, Massachusetts Genome Announcements; Vol. 3; No. 6; https://resolver.caltech.edu/CaltechAUTHORS:20160111-090546456
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Costa, Kyle C.; Bergkessel, Megan et al. (2015) Enzymatic Degradation of Phenazines Can Generate Energy and Protect Sensitive Organisms from Toxicity mBio; Vol. 6; No. 6; https://resolver.caltech.edu/CaltechAUTHORS:20151102-105401926
Kulkarni, Gargi; Busset, Nicolas et al. (2015) Specific hopanoid classes differentially affect free-living and symbiotic states of Bradyrhizobium diazoefficiens mBio; Vol. 6; No. 5; https://resolver.caltech.edu/CaltechAUTHORS:20151008-142740942
Coleman, Maureen L.; Newman, Dianne K. (2015) Molecular Methods in Geomicrobiology In: Ehrlich’s Geomicrobiology, Sixth Edition; https://resolver.caltech.edu/CaltechAUTHORS:20170518-163637436
Neubauer, C.; Dalleska, N. F. et al. (2015) Lipid remodeling in Rhodopseudomonas palustris TIE-1 upon loss of hopanoids and hopanoid methylation Geobiology; Vol. 13; No. 5; https://resolver.caltech.edu/CaltechAUTHORS:20150504-103056372
Cowley, Elise S.; Kopf, Sebastian H. et al. (2015) Pediatric Cystic Fibrosis Sputum Can Be Chemically Dynamic, Anoxic, and Extremely Reduced Due to Hydrogen Sulfide Formation mBio; Vol. 6; No. 4; https://resolver.caltech.edu/CaltechAUTHORS:20151002-111813971
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Morgan, James J.; Newman, Dianne K. (2015) A Conversation with James J. Morgan Annual Review of Earth and Planetary Sciences; Vol. 43; https://resolver.caltech.edu/CaltechAUTHORS:20150706-082030436
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Hunter, Ryan C.; Asfour, Fadi et al. (2013) Ferrous Iron Is a Significant Component of Bioavailable Iron in Cystic Fibrosis Airways mBio; Vol. 4; No. 4; https://resolver.caltech.edu/CaltechAUTHORS:20170524-074650388
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Kulkarni, Gargi; Wu, Chia-Hung et al. (2013) The General Stress Response Factor EcfG Regulates Expression of the C-2 Hopanoid Methylase HpnP in Rhodopseudomonas palustris TIE-1 Journal of Bacteriology; Vol. 195; No. 11; https://resolver.caltech.edu/CaltechAUTHORS:20130627-100549056
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Lee, A. K.; Newman, D. K. (2003) Microbial iron respiration: impacts on corrosion processes Applied Microbiology and Biotechnology; Vol. 62; No. 2-3; https://resolver.caltech.edu/CaltechAUTHORS:20130313-102137541
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Bosak, Tanja; Newman, Dianne K. (2003) Microbial nucleation of calcium carbonate in the Precambrian Geology; Vol. 31; No. 7; https://resolver.caltech.edu/CaltechAUTHORS:20130313-083421706
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Newman, Dianne K.; Banfield, Jillian F. (2002) Geomicrobiology: How Molecular-Scale Interactions Underpin Biogeochemical Systems Science; Vol. 296; No. 5570; https://resolver.caltech.edu/CaltechAUTHORS:20130313-105838365
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