Rosen Bioengineering Center

(Rosen Center)

https://www.rosen.caltech.edu/

combined from CaltechAUTHORS

• Mora, Ariane; Reisenbauer, Julia C.; et al. (2026) A unified pipeline for discovering previously unknown enzyme activities; 10.64898/2026.02.02.703255
• Bi, Xiaotian; Suen, Berea; et al. (2026) GFP-free live neuron quantitative imaging reveals compartmentalization and growth dynamics of polyQ aggregates; Proceedings of the National Academy of Sciences; Vol. 123; No. 4; e2505321123; PMCID PMC12849692; 10.1073/pnas.2505321123
• Nichols, Aaron L.; Marotta, Christopher B.; et al. (2026) Hydrogel Encapsulation of a Designed Fluorescent Protein Biosensor for Continuous Measurements of Sub-100 nM Nicotine; ACS Applied Bio Materials; Vol. 9; No. 2; 765-774; 10.1021/acsabm.5c01418
• Lambert, Théophile; Tavakoli, Amin; et al. (2026) Sequence-based generative AI design of versatile tryptophan synthases; Nature Communications; Vol. 17; No. 1; 1680; PMCID PMC12909874; 10.1038/s41467-026-68384-6
• Rieger, William JF; Boden, Mikael; et al. (2026) Squidly: Enzyme Catalytic Residue Prediction Harnessing a Biology-Informed Contrastive Learning Framework; 10.7554/elife.108186
• Yang, Fan; Liu, Shichen; et al. (2025) Geometry-dependent defect merging induces bifurcated dynamics in active networks; Physical Review Research; Vol. 7; No. 4; L042006; 10.1103/m8cb-gf1q
• Kennemur, Jennifer L.; Long, Yueming; et al. (2025) Enzymatic Stereodivergent Synthesis of Azaspiro[2.y]alkanes; Journal of the American Chemical Society; Vol. 147; No. 31; 27165-27171; 10.1021/jacs.5c07015
• Flamholz, Avi I.; Goyal, Akshit; et al. (2025) The proteome is a terminal electron acceptor; Proceedings of the National Academy of Sciences; Vol. 122; No. 1; e2404048121; PMCID PMC11725909; 10.1073/pnas.2404048121
• Shadkhoo, Shahriar and Thomson, Matt (2024) Theoretical limits of energy extraction in active fluids; Physical Review Research; Vol. 6; No. 2; 23195; 10.1103/physrevresearch.6.023195
• Flynn, Michael James; Mayfield, Acacia M.; et al. (2024) Synthetic dosage-compensating miRNA circuits allow precision gene therapy for Rett syndrome; bioRxiv; 2024.03.13.584179; PMCID PMC10980028; 10.1101/2024.03.13.584179
• Zhou, Tingtao; Wan, Xuan; et al. (2024) AI-aided geometric design of anti-infection catheters; Science Advances; Vol. 10; No. 1; eadj1741; PMCID PMC10776022; 10.1126/sciadv.adj1741
• Qin, Zi-Yang; Gao, Shilong; et al. (2023) Biocatalytic Construction of Chiral Pyrrolidines and Indolines via Intramolecular C(sp³)–H Amination; ACS Central Science; Vol. 9; No. 12; 2333-2338; PMCID PMC10755850; 10.1021/acscentsci.3c00516
• Ling, Bill; Ko, Jeong Hoon; et al. (2023) Gas Vesicle–Blood Interactions Enhance Ultrasound Imaging Contrast; Nano Letters; Vol. 23; No. 33; 10748-10757; PMCID PMC10722532; 10.1021/acs.nanolett.3c02780
• Jin, Zhiyang; Lakshmanan, Anupama; et al. (2023) Ultrasonic reporters of calcium for deep tissue imaging of cellular signals; PMCID PMC10659314; 10.1101/2023.11.09.566364
• Wu-Woods, Natalie J.; Barlow, Jacob T.; et al. (2023) Microbial-enrichment method enables high-throughput metagenomic characterization from host-rich samples; Nature Methods; Vol. 20; No. 11; 1672-1682; PMCID PMC10885704; 10.1038/s41592-023-02025-4
• Huang, Shan; Wang, Kaihang; et al. (2023) Genome manipulation by guide-directed Argonaute cleavage; Nucleic Acids Research; Vol. 51; No. 8; 4078-4085; PMCID PMC10164581; 10.1093/nar/gkad188
• Shirzaei Sani, Ehsan; Xu, Changhao; et al. (2023) A stretchable wireless wearable bioelectronic system for multiplexed monitoring and combination treatment of infected chronic wounds; Science Advances; Vol. 9; No. 12; eadf7388; PMCID PMC10038347; 10.1126/sciadv.adf7388
• Haloi, Nandan; Huang, Shan; et al. (2023) Interactive computational and experimental approaches improve the sensitivity of periplasmic binding protein-based nicotine biosensors for measurements in biofluids; 10.1101/2023.01.16.524298
• Abdel-Haq, Reem; Schlachetzki, Johannes C. M.; et al. (2022) A prebiotic diet modulates microglial states and motor deficits in α-synuclein overexpressing mice; eLife; Vol. 11; Art. No. e81453; PMCID PMC9668333; 10.7554/elife.81453
• Abdel-Haq, Reem; Schlachetzki, Johannes C. M.; et al. (2022) A prebiotic diet modulates microglial states and motor deficits in α-synuclein overexpressing mice; 10.1101/2022.06.27.497828
• Eze, Ngozi A. and Milam, Valeria T. (2022) Quantitative Analysis of In Situ Locked Nucleic Acid and DNA Competitive Displacement Events on Microspheres; Langmuir; Vol. 38; No. 22; 6871-6881; 10.1021/acs.langmuir.2c00220
• Wang, Canran; Shirzaei Sani, Ehsan; et al. (2022) Wearable Bioelectronics for Chronic Wound Management; Advanced Functional Materials; Vol. 32; No. 17; 2111022; PMCID PMC9518812; 10.1002/adfm.202111022
• Greenwald, Noah F.; Miller, Geneva; et al. (2022) Whole-cell segmentation of tissue images with human-level performance using large-scale data annotation and deep learning; Nature Biotechnology; Vol. 40; No. 4; 555-565; PMCID PMC9010346; 10.1038/s41587-021-01094-0
• Winnett, Alexander Viloria; Porter, Michael K.; et al. (2022) Morning SARS-CoV-2 testing yields better detection of infection due to higher viral loads in saliva and nasal swabs upon waking; 10.1101/2022.03.02.22271724
• Shen, Cheng; Zhou, Haowen; et al. (2022) Non-interferometric and non-iterative complex wave-field reconstruction based on Kramers-Kronig relations; 10.1117/12.2608280
• Shen, Cheng; Lamba, Adiyant; et al. (2022) Stain-free detection of embryo polarization using deep learning; Scientific Reports; Vol. 12; Art. No. 2404; 10.1038/s41598-022-05990-6
• Savela, Emily S.; Winnett, Alexander Viloria; et al. (2022) Quantitative SARS-CoV-2 Viral-Load Curves in Paired Saliva Samples and Nasal Swabs Inform Appropriate Respiratory Sampling Site and Analytical Test Sensitivity Required for Earliest Viral Detection; Journal of Clinical Microbiology; Vol. 60; No. 2; Art. No. e01785-21; PMCID PMC8849374; 10.1128/JCM.01785-21
• Ramachandran, Karthik; Shao, Zixuan; et al. (2022) Tungsten disulfide nanotubes enhance flow-induced crystallization and radio-opacity of polylactide without adversely affecting in vitro toxicity; Acta Biomaterialia; Vol. 138; 313-326; PMCID PMC9505057; 10.1016/j.actbio.2021.11.005
• Huang, Shan; Wang, Kaihang; et al. (2021) Genome manipulation by guide-directed Argonaute cleavage; 10.1101/2021.11.17.469050
• Barlow, Jacob T.; Leite, Gabriela; et al. (2021) Quantitative sequencing clarifies the role of disruptor taxa, oral microbiota, and strict anaerobes in the human small-intestine microbiome; Microbiome; Vol. 9; Art. No. 214; PMCID PMC8561862; 10.1186/s40168-021-01162-2
• Kim, Gunho; Portela, Carlos M.; et al. (2021) Poroelastic microlattices for underwater wave focusing; Extreme Mechanics Letters; Vol. 49; Art. No. 101499; 10.1016/j.eml.2021.101499
• Belliveau, Nathan M.; Chure, Griffin; et al. (2021) Fundamental limits on the rate of bacterial growth and their influence on proteomic composition; Cell Systems; Vol. 12; No. 9; 924-944; PMCID PMC8460600; 10.1016/j.cels.2021.06.002
• Qu, Zijie; Schildknecht, Dominik; et al. (2021) Persistent fluid flows defined by active matter boundaries; Communications Physics; Vol. 4; Art. No. 198; 10.1038/s42005-021-00703-3
• Tsypin, Lev M. and Newman, Dianne K. (2021) Nitrate Reduction Stimulates and Is Stimulated by Phenazine-1-Carboxylic Acid Oxidation by Citrobacter portucalensis MBL; mBio; Vol. 12; No. 4; Art. No. e02265-21; 10.1128/mBio.02265-21
• Shen, Cheng; Liang, Mingshu; et al. (2021) Non-iterative complex wave-field reconstruction based on Kramers–Kronig relations; Photonics Research; Vol. 9; No. 6; 1003-1012; 10.1364/PRJ.419886
• Hochrein, Lisa M.; Li, Heyun; et al. (2021) High-Performance Allosteric Conditional Guide RNAs for Mammalian Cell-Selective Regulation of CRISPR/Cas; ACS Synthetic Biology; Vol. 10; No. 5; 964-971; 10.1021/acssynbio.1c00037
• Buss, Marjorie T.; Ramesh, Pradeep; et al. (2021) Spatial Control of Probiotic Bacteria in the Gastrointestinal Tract Assisted by Magnetic Particles; Advanced Materials; Vol. 33; No. 17; Art. No. 2007473; 10.1002/adma.202007473
• Laccetti, Benjamin and Kornfield, Julia (2021) Ballistic delivery of compounds to inner layers of the cornea is limited by tough mechanical properties of stromal tissue; Journal of the Mechanical Behavior of Biomedical Materials; Vol. 115; Art. No. 104246; 10.1016/j.jmbbm.2020.104246
• Zheng, Guoan; Shen, Cheng; et al. (2021) Concept, implementations and applications of Fourier ptychography; Nature Reviews Physics; Vol. 3; No. 3; 207-223; 10.1038/s42254-021-00280-y
• Qu, Zijie; Jiang, Jialong; et al. (2021) Programming Boundary Deformation Patterns in Active Networks; 10.48550/arXiv.2101.08464
• Morrison, Muir; Razo-Mejia, Manuel; et al. (2021) Reconciling kinetic and thermodynamic models of bacterial transcription; PLOS Computational Biology; Vol. 17; No. 1; Art. No. e1008572; PMCID PMC7845990; 10.1371/journal.pcbi.1008572
• Bannon, Dylan; Moen, Erick; et al. (2021) DeepCell Kiosk: scaling deep learning–enabled cellular image analysis with Kubernetes; Nature Methods; Vol. 18; No. 1; 43-45; 10.1038/s41592-020-01023-0
• Xu, Jian; Jahromi, Ali K.; et al. (2021) Diffusing wave spectroscopy: A unified treatment on temporal sampling and speckle ensemble methods; APL Photonics; Vol. 6; No. 1; Art. No. 016105; 10.1063/5.0034576
• Winnett, Alexander; Cooper, Matthew M.; et al. (2020) SARS-CoV-2 Viral Load in Saliva Rises Gradually and to Moderate Levels in Some Humans; PMCID PMC7743094; 10.1101/2020.12.09.20239467
• Tsypin, Lev M. and Newman, Dianne K. (2020) Bidirectional redox cycling of phenazine-1-carboxylic acid by Citrobacter portucalensis MBL drives increased nitrate reduction; 10.1101/2020.11.23.395335
• Wu, Zhiguang; Chen, Ye; et al. (2020) Medical micro/nanorobots in complex media; Chemical Society Reviews; Vol. 49; No. 22; 8088-8112; 10.1039/d0cs00309c
• Merk, Liana N.; Shur, Andrey S.; et al. (2020) Engineering Logical Inflammation Sensing Circuit for Modulating Gut Conditions; 10.1101/2020.11.10.377085
• Trivedi, Vikas; Madaan, Sara; et al. (2020) Imaging the Beating Heart with Macroscopic Phase Stamping; 10.48550/arXiv.2011.01688
• Cua, Michelle; Martin, Daniel; et al. (2020) Method to Determine Syringe Silicone Oil Layer Heterogeneity and Investigation of its Impact on Product Particle Counts; Journal of Pharmaceutical Sciences; Vol. 109; No. 11; 3292-3299; PMCID PMC7572663; 10.1016/j.xphs.2020.07.012
• Rabut, Claire; Yoo, Sangjin; et al. (2020) Ultrasound Technologies for Imaging and Modulating Neural Activity; Neuron; Vol. 108; No. 1; 93-110; 10.1016/j.neuron.2020.09.003
• Saunders, Scott H.; Tse, Edmund C. M.; et al. (2020) Extracellular DNA Promotes Efficient Extracellular Electron Transfer by Pyocyanin in Pseudomonas aeruginosa Biofilms; Cell; Vol. 182; No. 4; 919-932; PMCID PMC7457544; 10.1016/j.cell.2020.07.006
• Razo-Mejia, Manuel; Marzen, Sarah; et al. (2020) First-principles prediction of the information processing capacity of a simple genetic circuit; Physical Review E; Vol. 102; No. 2; Art. No. 022404; 10.1103/PhysRevE.102.022404
• Ruan, Haowen; Liu, Yan; et al. (2020) Fluorescence imaging through dynamic scattering media with speckle-encoded ultrasound-modulated light correlation; Nature Photonics; Vol. 14; No. 8; 511-516; 10.1038/s41566-020-0630-0
• Quintero-Cadena, Porfirio; Lenstra, Tineke L.; et al. (2020) RNA Pol II Length and Disorder Enable Cooperative Scaling of Transcriptional Bursting; Molecular Cell; Vol. 79; No. 2; 207-220; 10.1016/j.molcel.2020.05.030
• Barlow, Jacob T.; Bogatyrev, Said R.; et al. (2020) A Quantitative Sequencing Framework for Absolute Abundance Measurements of Mucosal and Lumenal Microbial Communities; Nature Communications; Vol. 11; Art. No. 2590; PMCID PMC7244552; 10.1038/s41467-020-16224-6
• Xu, Jian; Cao, Ruizhi; et al. (2020) Single-shot surface 3D imaging by optical coherence factor; Optics Letters; Vol. 45; No. 7; 1734-1737; 10.1364/ol.384551
• Min, Jihong; Yang, Yiran; et al. (2020) Robotics in the Gut; Advanced Therapeutics; Vol. 3; No. 4; Art. No. 1900125; 10.1002/adtp.201900125
• Davis, Hunter C.; Kang, Sunghwi; et al. (2020) Nanoscale Heat Transfer from Magnetic Nanoparticles and Ferritin in an Alternating Magnetic Field; Biophysical Journal; Vol. 118; No. 6; 1502-1510; PMCID PMC7091488; 10.1016/j.bpj.2020.01.028
• Einav, Tal; Yazdi, Shahrzad; et al. (2019) Harnessing Avidity: Quantifying the Entropic and Energetic Effects of Linker Length and Rigidity for Multivalent Binding of Antibodies to HIV-1; Cell Systems; Vol. 9; No. 5; 466-474; PMCID PMC6892280; 10.1016/j.cels.2019.09.007
• Song, Yu; Min, Jihong; et al. (2019) Wearable and Implantable Electronics: Moving toward Precision Therapy; ACS Nano; Vol. 13; No. 11; 12280-12286; 10.1021/acsnano.9b08323
• Moen, Erick; Borba, Enrico; et al. (2019) Accurate cell tracking and lineage construction in live-cell imaging experiments with deep learning; 10.1101/803205
• Zhukov, Dmitriy V.; Khorosheva, Eugenia M.; et al. (2019) Microfluidic SlipChip device for multistep multiplexed biochemistry on a nanoliter scale; Lab on a Chip; Vol. 19; No. 19; 3200-3211; 10.1039/c9lc00541b
• Ramirez-Zamora, Adolfo and Gradinaru, Viviana (2019) Proceedings of the Sixth Deep Brain Stimulation Think Tank Modulation of Brain Networks and Application of Advanced Neuroimaging, Neurophysiology, and Optogenetics; Frontiers in Neuroscience; Vol. 13; Art. No. 936; PMCID PMC6751331; 10.3389/fnins.2019.00936
• Chure, Griffin; Razo-Mejia, Manuel; et al. (2019) Predictive shifts in free energy couple mutations to their phenotypic consequences; Proceedings of the National Academy of Sciences of the United States of America; Vol. 116; No. 37; 18275-18284; PMCID PMC6744869; 10.1073/pnas.1907869116
• Yang, Kevin K.; Wu, Zachary; et al. (2019) Machine-learning-guided directed evolution for protein engineering; Nature Methods; Vol. 16; No. 8; 687-694; 10.1038/s41592-019-0496-6
• Wu, Zhiguang; Li, Lei; et al. (2019) A microrobotic system guided by photoacoustic computed tomography for targeted navigation in intestines in vivo; Science Robotics; Vol. 4; No. 32; Art. No. eaax0613; PMCID PMC7337196; 10.1126/scirobotics.aax0613
• Hanewich-Hollatz, Mikhail H.; Chen, Zhewei; et al. (2019) Conditional Guide RNAs: Programmable Conditional Regulation of CRISPR/Cas Function in Bacterial and Mammalian Cells via Dynamic RNA Nanotechnology; ACS Central Science; Vol. 5; No. 7; 1241-1249; PMCID PMC6661866; 10.1021/acscentsci.9b00340
• Einav, Tal and Phillips, Rob (2019) How the avidity of polymerase binding to the –35/–10 promoter sites affects gene expression; Proceedings of the National Academy of Sciences of the United States of America; Vol. 116; No. 27; 13340-13345; PMCID PMC6613100; 10.1073/pnas.1905615116
• Zhang, Juner; Huang, Xiongyi; et al. (2019) Enantiodivergent α-Amino C–H Fluoroalkylation Catalyzed by Engineered Cytochrome P450s; Journal of the American Chemical Society; Vol. 141; No. 25; 9798-9802; PMCID PMC6666315; 10.1021/jacs.9b04344
• Chure, Griffin; Razo-Mejia, Manuel; et al. (2019) The Energetics of Molecular Adaptation in Transcriptional Regulation; 10.48550/arXiv.1905.06360
• Rajendran, Pradeep S.; Challis, Rosemary C.; et al. (2019) Identification of peripheral neural circuits that regulate heart rate using optogenetic and viral vector strategies; Nature Communications; Vol. 10; Art. No. 1944; PMCID PMC6486614; 10.1038/s41467-019-09770-1
• Galstyan, Vahe; Funk, Luke; et al. (2019) Combinatorial Control through Allostery; Journal of Physical Chemistry B; Vol. 123; No. 13; 2792-2800; PMCID PMC6467274; 10.1021/acs.jpcb.8b12517
• Zhang, Xuan; Vyatskikh, Andrey; et al. (2019) Lightweight, flaw-tolerant, and ultrastrong nanoarchitected carbon; Proceedings of the National Academy of Sciences of the United States of America; Vol. 116; No. 14; 6665-6672; PMCID PMC6452738; 10.1073/pnas.1817309116
• Yang, Kevin K.; Chen, Yuxin; et al. (2019) Batched Stochastic Bayesian Optimization via Combinatorial Constraints Design; Proceedings of Machine Learning Research; Vol. 89; 3410-3419; 10.48550/arXiv.1904.08102
• Zhang, Ruijie K.; Huang, Xiongyi; et al. (2019) Selective C-H bond functionalization with engineered heme proteins: new tools to generate complexity; Current Opinion in Chemical Biology; Vol. 49; 67-75; PMCID PMC6461521; 10.1016/j.cbpa.2018.10.004
• Vyatskikh, Andrey; Ng, Ryan C.; et al. (2019) Additive manufacturing of titanium dioxide for dielectric photonic crystals; 10.1117/12.2507076
• Cho, Inha; Prier, Christopher K.; et al. (2019) Enantioselective Aminohydroxylation of Styrenyl Olefins Catalyzed by an Engineered Hemoprotein; Angewandte Chemie International Edition; Vol. 58; No. 10; 3138-3142; 10.1002/anie.201812968
• Challis, Rosemary C.; Ravindra Kumar, Sripriya; et al. (2019) Systemic AAV vectors for widespread and targeted gene delivery in rodents; Nature Protocols; Vol. 14; No. 2; 379-414; 10.1038/s41596-018-0097-3
• Abdel-Haq, Reem; Schlachetzki, Johannes C. M.; et al. (2019) Microbiome–microglia connections via the gut–brain axis; Journal of Experimental Medicine; Vol. 216; No. 1; 41-59; PMCID PMC6314531; 10.1084/jem.20180794
• Zhang, Ruijie K.; Chen, Kai; et al. (2019) Enzymatic assembly of carbon–carbon bonds via iron-catalysed sp³ C–H functionalization; Nature; Vol. 565; No. 7737; 67-72; PMCID PMC6440214; 10.1038/s41586-018-0808-5
• Shapero, Aubrey; Agarwal, Abhinav; et al. (2019) Wireless Implantable Intraocular Pressure Sensor with Parylene-Oil-Encapsulation and Forward-Angled RF Coil; ISBN 9781728116105; 2019 IEEE 32nd International Conference on Micro Electro Mechanical Systems (MEMS); IEEE: Piscataway, NJ; 21-24; 10.1109/memsys.2019.8870787
• Hochrein, Lisa M.; Ge, Tianjia J.; et al. (2018) Signal Transduction in Human Cell Lysate via Dynamic RNA Nanotechnology; ACS Synthetic Biology; Vol. 7; No. 12; 2796-2802; PMCID PMC6305621; 10.1021/acssynbio.8b00424
• Einav, Tal; Gnanapragasam, Priyanthi N. P.; et al. (2018) Modeling Entropic and Energetic Effects of Linker Length and Rigidity within Synthetic HIV-1 Antibodies designed to Bind Bivalently to Env Spikes; 10.1101/406454
• Rapp, Peter B.; Omar, Ahmad K.; et al. (2018) Mechanisms of diffusion in associative polymer networks: evidence for chain hopping; Journal of the American Chemical Society; Vol. 140; No. 43; 14185-14194; PMCID PMC8997312; 10.1021/jacs.8b07908
• Einav, Tal; Duque, Julia; et al. (2018) Theoretical analysis of inducer and operator binding for cyclic-AMP receptor protein mutants; PLoS ONE; Vol. 13; No. 9; Art. No. e0204275; PMCID PMC6157895; 10.1371/journal.pone.0204275
• Einav, Tal; Yazdi, Shahrzad; et al. (2018) Harnessing Avidity: Quantifying Entropic and Energetic Effects of Linker Length and Rigidity Required for Multivalent Binding of Antibodies to HIV-1 Spikes; 10.1101/406454
• Galimidi, Rachel P.; Einav, Tal; et al. (2018) Quantifying the Entropic and Energetic Effects of Linker Length and Rigidity within Synthetic HIV-1 Antibodies designed to Bind Bivalently to Env Spikes; 10.1101/406454
• Yang, Kevin K.; Wu, Zachary; et al. (2018) Learned Protein Embeddings for Machine Learning; Bioinformatics; Vol. 34; No. 15; 2642-2648; PMCID PMC6061698; 10.1093/bioinformatics/bty178
• Vyatskikh, Andrey; Kudo, Akira; et al. (2018) Additive Manufacturing of Polymer-Derived Titania for One-Step Solar Water Purification; Materials Today Communications; Vol. 15; 288-293; 10.1016/j.mtcomm.2018.02.010
• Maresca, David; Lakshmanan, Anupama; et al. (2018) Biomolecular Ultrasound and Sonogenetics; Annual Review of Chemical and Biomolecular Engineering; Vol. 9; 229-252; PMCID PMC6086606; 10.1146/annurev-chembioeng-060817-084034
• Belliveau, Nathan M.; Barnes, Stephanie L.; et al. (2018) Systematic approach for dissecting the molecular mechanisms of transcriptional regulation in bacteria; Proceedings of the National Academy of Sciences of the United States of America; Vol. 115; No. 21; E4796-E4805; PMCID PMC6003448; 10.1073/pnas.1722055115
• Huang, Audrey; Sheldan, Benjamin; et al. (2018) Physically optimizing inference; 10.48550/arXiv.1805.07512
• Brandenberg, Oliver F.; Prier, Christopher K.; et al. (2018) Stereoselective Enzymatic Synthesis of Heteroatom-Substituted Cyclopropanes; ACS Catalysis; Vol. 8; No. 4; 2629-2634; 10.1021/acscatal.7b04423
• Knight, Anders M.; Kan, S. B. Jennifer; et al. (2018) Diverse engineered heme proteins enable stereodivergent cyclopropanation of unactivated alkenes; ACS Central Science; Vol. 4; No. 3; 372-377; PMCID PMC5879470; 10.1021/acscentsci.7b00548
• Vyatskikh, Andrey; Delalande, Stéphane; et al. (2018) Additive manufacturing of 3D nano-architected metals; Nature Communications; Vol. 9; Art. No. 593; PMCID PMC5807385; 10.1038/s41467-018-03071-9
• Jang, Mooseok; Horie, Yu; et al. (2018) Wavefront shaping with disorder-engineered metasurfaces; Nature Photonics; Vol. 12; No. 2; 84-90; PMCID PMC5842956; 10.1038/s41566-017-0078-z
• Davis, Hunter C.; Ramesh, Pradeep; et al. (2018) Mapping the microscale origins of magnetic resonance image contrast with subcellular diamond magnetometry; Nature Communications; Vol. 9; Art. No. 131; PMCID PMC5760582; 10.1038/s41467-017-02471-7
• Trivedi, Vikas; Choi, Harry M. T.; et al. (2018) Multidimensional quantitative analysis of mRNA expression within intact vertebrate embryos; Development; Vol. 145; No. 1; Art. No. 156869; PMCID PMC5825878; 10.1242/dev.156869
• Ruan, Haowen; Brake, Joshua; et al. (2017) Deep tissue optical focusing and optogenetic modulation with time-reversed ultrasonically encoded light; Science Advances; Vol. 3; No. 12; Art. No. eaao5520; PMCID PMC5722648; 10.1126/sciadv.aao5520
• Ruan, Haowen; Haber, Tom; et al. (2017) Focusing light inside scattering media with magnetic-particle-guided wavefront shaping; Optica; Vol. 4; No. 11; 1337-1343; PMCID PMC5881932; 10.1364/OPTICA.4.001337
• Qureshi, Muhammad Mohsin; Brake, Joshua; et al. (2017) In vivo study of optical speckle decorrelation time across depths in the mouse brain; Biomedical Optics Express; Vol. 8; No. 11; 4855-4864; PMCID PMC5695936; 10.1364/BOE.8.004855
• Bedbrook, Claire N.; Yang, Kevin K.; et al. (2017) Machine learning to design integral membrane channelrhodopsins for efficient eukaryotic expression and plasma membrane localization; PLOS Computational Biology; Vol. 13; No. 10; Art. No. e1005786; PMCID PMC5695628; 10.1371/journal.pcbi.1005786
• Obana, Maiko; Silverman, Bradley R.; et al. (2017) Protein-Mediated Colloidal Assembly; Journal of the American Chemical Society; Vol. 139; No. 40; 14251-14256; PMCID PMC5672941; 10.1021/jacs.7b07798
• Hammer, Stephan C.; Knight, Anders M.; et al. (2017) Design and Evolution of Enzymes for Non-natural Chemistry; Current Opinion in Green and Sustainable Chemistry; Vol. 7; 23-30; 10.1016/j.cogsc.2017.06.002
• Lakshmanan, Anupama; Lu, George J.; et al. (2017) Preparation of biogenic gas vesicle nanostructures for use as contrast agents for ultrasound and MRI; Nature Protocols; Vol. 12; No. 10; 2050-2080; PMCID PMC6185898; 10.1038/nprot.2017.081
• Glasser, Nathaniel R.; Saunders, Scott H.; et al. (2017) The Colorful World of Extracellular Electron Shuttles; Annual Review of Microbiology; Vol. 71; 731-751; PMCID PMC5679407; 10.1146/annurev-micro-090816-093913
• Prier, Christopher K.; Zhang, Ruijie K.; et al. (2017) Enantioselective, intermolecular benzylic C–H amination catalysed by an engineered iron-haem enzyme; Nature Chemistry; Vol. 9; No. 7; 629-634; PMCID PMC5555633; 10.1038/nchem.2783
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