Heritage Medical Research Institute

Articles from CaltechAUTHORS

• Hubble, Veronica B.; Suarez, Camila A.; et al. (2026) Synthesis of bufalin and digitoxigenin derivatives; Tetrahedron; Vol. 193; 135092; 10.1016/j.tet.2025.135092
• Moiseyenko, Anastasiya; Antonello, Giacomo; et al. (2026) Faecalibacterium prausnitzii, depleted in the Parkinson’s disease microbiome, improves motor deficits in α-synuclein overexpressing mice; npj Parkinson’s Disease; Vol. 12; No. 1; 94; PMCID PMC13077053; 10.1038/s41531-026-01287-x
• Kocheril, Philip A.; Wang, Haomin; et al. (2026) Far-field single-molecule vibrational spectroscopy and imaging; Chemical Science; Vol. 17; No. 11; 5297-5316; PMCID PMC12927031; 10.1039/d5sc07076g
• Moiseyenko, Anastasiya; Antonello, Giacomo; et al. (2026) Faecalibacterium prausnitzii, depleted in the Parkinson’s disease microbiome, improves motor deficits in α-synuclein overexpressing mice; npj Parkinson’s Disease; 10.1038/s41531-026-01287-x
• Chadha, Rahuljeet S.; Yang, Benjamin; et al. (2026) Single-Cell Metabolic Imaging Reveals Glycogen‐Driven Adaptations in Endothelial Cells; Advanced Science; Vol. 13; No. 7; e08517; PMCID PMC12866687; 10.1002/advs.202508517
• Lin, Li-En; Colazo, Adrian; et al. (2026) High-Throughput Volumetric Mapping Facilitated by Active Tissue SHRINK; Small Methods; Vol. 10; No. 2; 2500382; PMCID PMC12353979; 10.1002/smtd.202500382
• Bi, Xiaotian; Suen, Berea; et al. (2026) GFP-free live neuron quantitative imaging reveals compartmentalization and growth dynamics of polyQ aggregates; Proceedings of the National Academy of Sciences; Vol. 123; No. 4; e2505321123; PMCID PMC12849692; 10.1073/pnas.2505321123
• Yang, Xuyu; Lee, Joo-Youn; et al. (2025) Predicted molecules followed by experimental validation for protecting human neurons from oxidative stress–induced cytotoxicity; Proceedings of the National Academy of Sciences; Vol. 122; No. 45; e2505359122; PMCID PMC12625973; 10.1073/pnas.2505359122
• Cerione, Chloe S.; Moghadam, Farbod A.; et al. (2025) Mo-Catalyzed Asymmetric Allylic Alkylation Enabling the Construction of Highly Enantioenriched 1,4-Dicarbonyl Scaffolds; Journal of the American Chemical Society; Vol. 147; No. 39; 35185-35191; PMCID PMC12498422; 10.1021/jacs.5c09250
• Bostick, John W.; Connerly, T. Jaymie; et al. (2025) Genotype and microbiome shape immunity in a sex-specific manner in mouse models of Alzheimer’s disease; Brain, Behavior, and Immunity; Vol. 129; 1014-1027; PMCID PMC12490345; 10.1016/j.bbi.2025.07.028
• Wang, Tongtong; Tufenkjian, Avedis; et al. (2025) Molecular and functional diversity of the autonomic nervous system; Nature Reviews Neuroscience; Vol. 26; No. 10; 607-622; 10.1038/s41583-025-00941-2
• Kocheril, Philip A.; Lee, Dongkwan; et al. (2025) Single-Molecule Vibrational Thermometry; Journal of Physical Chemistry B; Vol. 129; No. 34; 8788-8797; PMCID PMC12396515; 10.1021/acs.jpcb.5c04024
• Zoll, Adam J.; Cerione, Chloe S.; et al. (2025) Formation of vicinal secondary and all-carbon quaternary stereocenters in enantioenriched diazenes via branched-selective Pd-catalyzed allylic alkylation; Tetrahedron Letters; Vol. 165-166; 155657; 10.1016/j.tetlet.2025.155657
• Samkian, Adrian E.; Nguyen, Hanh T.; et al. (2025) On the unexpected formation of [2.2.1]- and [2.1.1]homotriblattanes; Tetrahedron Letters; Vol. 164; 155591; PMCID PMC12121957; 10.1016/j.tetlet.2025.155591
• Gross, Benjamin M. and Stoltz, Brian M. (2025) Concise Syntheses of Lycojapomine Alkaloids Enabled by Radical Dearomatization of a Pyrrole; Journal of the American Chemical Society; Vol. 147; No. 24; 20200-20204; 10.1021/jacs.5c05721
• Samkian, Adrian E.; Poonswat, Kasam; et al. (2025) A Modular Cyclopentene Annulation; Organic Letters; Vol. 27; No. 22; 5876-5879; PMCID PMC12251832; 10.1021/acs.orglett.5c01750
• Farhi, Jonathan; Rezgui, Samir P.; et al. (2025) Synthesis of the Pentacyclic Core of Sanguinone B Enabled by Alkyne Functionalization; Organic Letters; Vol. 27; No. 21; 5390-5393; 10.1021/acs.orglett.5c01332
• Hu, Chelsea Y.; McManus, John; et al. (2025) A Portable Arsenic Sensor Integrating Bacillus megaterium with CMOS Technology; ACS Synthetic Biology; Vol. 14; No. 5; 1615-1624; PMCID PMC12090344; 10.1021/acssynbio.4c00895
• Lin, Siyu; Zhou, Haowen; et al. (2025) Impact of stain variation and color normalization for prognostic predictions in pathology; Scientific Reports; Vol. 15; No. 1; 2369; 10.1038/s41598-024-83267-w
• Kipp, M. A.; Gao, A.; et al. (2024) ²³⁸U/²³⁵U in deep-sea corals reflects limited expansion of seafloor anoxia in last ice age; Geochemical Perspectives Letters; Vol. 33; 32-37; 10.7185/geochemlet.2449
• Tissot, François L H; Cleveland, Dylan; et al. (2024) Magnitude and timescales of Ca isotope variability in human urine: implications for bone mass balance monitoring; Metallomics; Vol. 16; No. 11; mfae050; 10.1093/mtomcs/mfae050
• Stanko, Allison M.; Ramirez, Melissa; et al. (2024) Enantioselective Nickel-Catalyzed α-Spirocyclization of Lactones; Organic Letters; Vol. 26; No. 32; 6793-6797; 10.1021/acs.orglett.4c01661
• Nie, Nicole X.; Grigoryan, Rosa; et al. (2024) High precision analysis of potassium stable isotopes using the collision/reaction cell Neoma MC-ICPMS/MS; Journal of Analytical Atomic Spectrometry; Vol. 39; No. 8; 2038-2048; 10.1039/d4ja00133h
• Samkian, Adrian E.; Virgil, Scott C.; et al. (2024) Total Synthesis of Hypersampsone M; Journal of the American Chemical Society; Vol. 146; No. 28; 18886-18891; 10.1021/jacs.4c07007
• Remírez, Mariano N.; Gilleaudeau, Geoffrey J.; et al. (2024) Carbonate uranium isotopes record global expansion of marine anoxia during the Toarcian Oceanic Anoxic Event; Proceedings of the National Academy of Sciences; Vol. 121; No. 27; e2406032121; 10.1073/pnas.2406032121
• Wu, Zihui; Yin, Tianwei; et al. (2024) Learning Task-Specific Strategies for Accelerated MRI; IEEE Transactions on Computational Imaging; 10.1109/tci.2024.3410521
• Wu, Zihui; Yin, Tianwei; et al. (2024) Learning Task-Specific Strategies for Accelerated MRI; IEEE Transactions on Computational Imaging; Vol. 10; 1040-1054; PMCID PMC12176373; 10.1109/TCI.2024.3410521
• Yin, Siyuan; Cao, Ruizhi; et al. (2024) Can deep neural networks work with amplitude and phase input of defocused images?; Optics Express; Vol. 32; No. 14; 25036-25045; 10.1364/oe.527986
• Misseroni, Diego; Pratapa, Phanisri P.; et al. (2024) Origami engineering; Nature Reviews Methods Primers; Vol. 4; 40; 10.1038/s43586-024-00313-7
• Gonzalez, Kevin J.; Cerione, Chloe; et al. (2024) Strategies for the Development of Asymmetric and Non‐Directed Petasis Reactions; Chemistry – A European Journal; e202401936; 10.1002/chem.202401936
• Li, Hongyi R.; Harb, Manwal; et al. (2024) Engineering viral vectors for acoustically targeted gene delivery; Nature Communications; Vol. 15; 4924; 10.1038/s41467-024-48974-y
• Cao, Ruizhi; Shen, Cheng; et al. (2024) High-resolution, large field-of-view label-free imaging via aberration-corrected, closed-form complex field reconstruction; Nature Communications; Vol. 15; 4713; PMCID PMC11148160; 10.1038/s41467-024-49126-y
• Kocheril, Philip A.; Wang, Haomin; et al. (2024) Nitrile Vibrational Lifetimes as Probes of Local Electric Fields; Journal of Physical Chemistry Letters; Vol. 15; No. 9; 5306-5314; 10.1021/acs.jpclett.4c00597
• Laubscher, Emily; Wang, Xuefei (Julie); et al. (2024) Accurate single-molecule spot detection for image-based spatial transcriptomics with weakly supervised deep learning; Cell Systems; Vol. 15; No. 5; 475-482.e6; 10.1016/j.cels.2024.04.006
• Yao, Dickson R.; Kim, Inho; et al. (2024) Multimodal Soft Robotic Actuation and Locomotion; Advanced Materials; Vol. 36; No. 19; 2308829; 10.1002/adma.202308829
• Chen, Peng-Jui; Cusumano, Alexander Q.; et al. (2024) Molecular Dynamics Investigations of Dienolate [4 + 2] Reactions; Journal of the American Chemical Society; Vol. 146; No. 18; 12758-12765; PMCID PMC11082897; 10.1021/jacs.4c02681
• Shadkhoo, Shahriar and Thomson, Matt (2024) Theoretical limits of energy extraction in active fluids; Physical Review Research; Vol. 6; No. 2; 23195; 10.1103/physrevresearch.6.023195
• Zhou, Haowen; Watson, Mark; et al. (2024) AI‐guided histopathology predicts brain metastasis in lung cancer patients; Journal of Pathology; Vol. 263; No. 1; 89-98; PMCID PMC11210939; 10.1002/path.6263
• Qian, Chenxi; Liu, Hanwei; et al. (2024) Quantitative Real-Time Analysis of Living Materials by Stimulated Raman Scattering Microscopy; Analytical Chemistry; Vol. 96; No. 17; 6540–6549; 10.1021/acs.analchem.3c03736
• Gross, Benjamin M. and Stoltz, Brian M. (2024) Convenient access to a strained bicyclic enone: A concise and improved formal synthesis of ineleganolide; Tetrahedron Letters; Vol. 140; 155011; 10.1016/j.tetlet.2024.155011
• Chadha, Rahuljeet S.; Guerrero, Jason A.; et al. (2024) Seeing is Believing: Developing Multimodal Metabolic Insights at the Molecular Level; ACS Central Science; Vol. 10; No. 4; 758-774; PMCID PMC11046475; 10.1021/acscentsci.3c01438
• Griffiths, Jessica A.; Yoo, Bryan B.; et al. (2024) Peripheral neuronal activation shapes the microbiome and alters gut physiology; Cell Reports; Vol. 43; No. 4; 113953; PMCID PMC11132177; 10.1016/j.celrep.2024.113953
• Muthukumar, Gayathri; Stevens, Taylor A.; et al. (2024) Triaging of α-helical proteins to the mitochondrial outer membrane by distinct chaperone machinery based on substrate topology; Molecular Cell; Vol. 84; No. 6; 1101-1119.e9; 10.1016/j.molcel.2024.01.028
• Hicks, Elliot F.; Inoue, Kengo; et al. (2024) Enantioselective Total Synthesis of (−)-Hunterine A Enabled by a Desymmetrization/Rearrangement Strategy; Journal of the American Chemical Society; Vol. 146; No. 7; 4340-4345; PMCID PMC10885145; 10.1021/jacs.3c13590
• Xu, Changhao; Song, Yu; et al. (2024) A physicochemical-sensing electronic skin for stress response monitoring; Nature Electronics; Vol. 7; No. 2; 168-179; PMCID PMC10906959; 10.1038/s41928-023-01116-6
• Huang, Linqing; Tissot, François L.H.; et al. (2024) High-precision zirconium isotope analysis of Pacific seawater reveals large mass-dependent fractionations in the ocean; Geochimica et Cosmochimica Acta; Vol. 365; 202-214; 10.1016/j.gca.2023.11.018
• Zieman, Lisa J.; Ibañez-Mejia, Mauricio; et al. (2024) Zirconium stable isotope fractionation during intra-crustal magmatic differentiation in an active continental arc; Geochimica et Cosmochimica Acta; Vol. 365; 53-69; 10.1016/j.gca.2023.11.023
• Li, Haoyu; Kipp, Michael A.; et al. (2024) Exploring uranium isotopes in shark teeth as a paleo-redox proxy; Geochimica et Cosmochimica Acta; Vol. 365; 158-173; 10.1016/j.gca.2023.11.034
• Zhou, Tingtao; Wan, Xuan; et al. (2024) AI-aided geometric design of anti-infection catheters; Science Advances; Vol. 10; No. 1; eadj1741; PMCID PMC10776022; 10.1126/sciadv.adj1741
• Zhang, Yameng; Pool, Allan-Hermann; et al. (2023) Parallel neural pathways control sodium consumption and taste valence; Cell; Vol. 186; No. 26; 5751-5765.e16; 10.1016/j.cell.2023.10.020
• Pavia, Frank J.; Cooperdock, Emily H. G.; et al. (2023) Uranium isotopes as tracers of serpentinite weathering; Earth and Planetary Science Letters; Vol. 623; 118434; 10.1016/j.epsl.2023.118434
• Yu, Hao; Sercel, Zachary P.; et al. (2023) Total Synthesis of Aleutianamine; Journal of the American Chemical Society; Vol. 145; No. 47; 25533-25537; PMCID PMC10690800; 10.1021/jacs.3c10212
• Stevens, Taylor Anthony; Pinton Tomaleri, Giovani; et al. (2023) A nanobody-based strategy for rapid and scalable purification of human protein complexes; Nature Protocols; 10.1038/s41596-023-00904-w
• Stoltz, Brian M. (2023) Editorial for special issue in honor of Professor John Wood; Tetrahedron; Vol. 148; 133700; 10.1016/j.tet.2023.133700
• Miaou, Emily and Tissot, François L. H. (2023) Copper isotope ratios in serum do not track cancerous tumor evolution, but organ failure; Metallomics; Vol. 15; No. 11; mfad060; 10.1093/mtomcs/mfad060
• Guna, Alina; Page, Katharine R.; et al. (2023) A dual sgRNA library design to probe genetic modifiers using genome-wide CRISPRi screens; BMC Genomics; Vol. 24; 651; PMCID PMC10614335; 10.1186/s12864-023-09754-y
• Kahan, Anat; Mahe, Karan; et al. (2023) Immediate responses to ambient light in vivo reveal distinct subpopulations of suprachiasmatic VIP neurons; iScience; Vol. 26; No. 10; 107865; PMCID PMC10520357; 10.1016/j.isci.2023.107865
• Wang, Haomin; Lee, Dongkwan; et al. (2023) Bond-selective fluorescence imaging with single-molecule sensitivity; Nature Photonics; Vol. 17; No. 10; 846-855; PMCID PMC10756635; 10.1038/s41566-023-01243-8
• Nishiura, Yuji; Gonzalez, Kevin J.; et al. (2023) Enantioselective 1,3-Dipolar Cycloadditions of α-Methylene Lactams to Construct Spirocycles; Organic Letters; Vol. 25; No. 35; 6469-6473; PMCID PMC10496134; 10.1021/acs.orglett.3c01978
• Zhang, Tianyi; Nishiura, Yuji; et al. (2023) Palladium-Catalyzed Asymmetric Conjugate Addition of Arylboronic Acids to α,β-Unsaturated Lactams: Enantioselective Construction of All-Carbon Quaternary Stereocenters in Saturated Nitrogen-Containing Heterocycles; Organic Letters; Vol. 25; No. 35; 6479-6484; PMCID PMC10496148; 10.1021/acs.orglett.3c02064
• Cusumano, Alexander; Zhang, Tianyi; et al. (2023) Origins of Enhanced Enantioselectivity in the Pd-Catalyzed Decarboxylative Allylic Alkylation of N-Benzoyl Lactams; Catalysts; Vol. 13; No. 9; 1258; PMCID PMC10662798; 10.3390/catal13091258
• Budde, Gerrit; Tissot, François L.H.; et al. (2023) Spurious molybdenum isotope anomalies resulting from non-exponential mass fractionation; Geochemistry; Vol. 83; No. 3; 126007; 10.1016/j.chemer.2023.126007
• Mukasa, Daniel; Wang, Minqiang; et al. (2023) A Computationally Assisted Approach for Designing Wearable Biosensors toward Non‐Invasive Personalized Molecular Analysis; Advanced Materials; Art. No. 2212161; 10.1002/adma.202212161
• Kim, Alexia N.; Ngamnithiporn, Aurapat; et al. (2023) Recent Advances in the Total Synthesis of the Tetrahydroisoquinoline Alkaloids (2002–2020); Chemical Reviews; Vol. 123; No. 15; 9447-9496; PMCID PMC10416225; 10.1021/acs.chemrev.3c00054
• Pleiner, Tino; Hazu, Masami; et al. (2023) A selectivity filter in the ER membrane protein complex limits protein misinsertion at the ER; Journal of Cell Biology; Vol. 222; No. 8; Art. No. e202212007; PMCID PMC10200711; 10.1083/jcb.202212007
• Shen, Yihui; Wei, Lu; et al. (2023) Raman Imaging Reveals Insights into Membrane Phase Biophysics in Cells; Journal of Physical Chemistry B; Vol. 127; No. 28; 6233-6240; PMCID PMC11209838; 10.1021/acs.jpcb.3c03125
• Wang, Linghui; Kim, Tae Hyun; et al. (2023) Ion transport in thermally responsive pectin film; Applied Physics Letters; Vol. 123; No. 2; 21903; 10.1063/5.0142020
• Barbor, Jay P.; Nair, Vaishnavi N.; et al. (2023) Development of a Nickel-Catalyzed N–N Coupling for the Synthesis of Hydrazides; Journal of the American Chemical Society; Vol. 145; No. 28; 15071-15077; PMCID PMC10360072; 10.1021/jacs.3c04834
• Choi, Yongsuk; Ho, Dong Hae; et al. (2023) Physically defined long-term and short-term synapses for the development of reconfigurable analog-type operators capable of performing health care tasks; Science Advances; Vol. 9; No. 27; Art. No. eadg5946; PMCID PMC10321737; 10.1126/sciadv.adg5946
• Liu, Weiyi; Zhang, Yigang; et al. (2023) I/Pu reveals Earth mainly accreted from volatile-poor differentiated planetesimals; Science Advances; Vol. 9; No. 27; Art. No. eadg9213; PMCID PMC10321745; 10.1126/sciadv.adg9213
• Schwartz, Morgan; Israel, Uriah; et al. (2023) Scaling biological discovery at the interface of deep learning and cellular imaging; Nature Methods; Vol. 20; No. 7; 956-957; 10.1038/s41592-023-01931-x
• Chen, Xinhong; Wolfe, Damien A.; et al. (2023) Functional gene delivery to and across brain vasculature of systemic AAVs with endothelial-specific tropism in rodents and broad tropism in primates; Nature Communications; Vol. 14; Art. No. 3345; PMCID PMC10250345; 10.1038/s41467-023-38582-7
• Greßies, Steffen; Süße, Lars; et al. (2023) Tandem Dearomatization/Enantioselective Allylic Alkylation of Pyridines; Journal of the American Chemical Society; Vol. 145; No. 22; 11907-11913; PMCID PMC10251512; 10.1021/jacs.3c02470
• Flesch, Kaylin N.; Cusumano, Alexander Q.; et al. (2023) Divergent Catalysis: Catalytic Asymmetric [4+2] Cycloaddition of Palladium Enolates; Journal of the American Chemical Society; Vol. 145; No. 20; 11301-11310; PMCID PMC10388310; 10.1021/jacs.3c02104
• Inglis, Alison J.; Guna, Alina; et al. (2023) Coupled protein quality control during nonsense-mediated mRNA decay; Journal of Cell Science; Vol. 136; No. 10; Art. No. jcs261216; PMCID PMC10234110; 10.1242/jcs.261216
• Hafeman, Nicholas J.; Loskot, Steven A.; et al. (2023) Total synthesis of (−)-scabrolide A and (−)-yonarolide; Chemical Science; Vol. 14; No. 18; 4745-4758; PMCID PMC10173254; 10.1039/d3sc00651d
• Dutka, Przemysław; Metskas, Lauren Ann; et al. (2023) Structure of Anabaena flos-aquae gas vesicles revealed by cryo-ET; Structure; Vol. 31; No. 5; 518-528; PMCID PMC10185304; 10.1016/j.str.2023.03.011
• Min, Jihong; Tu, Jiaobing; et al. (2023) Skin-Interfaced Wearable Sweat Sensors for Precision Medicine; Chemical Reviews; Vol. 123; No. 8; 5049-5138; PMCID PMC10406569; 10.1021/acs.chemrev.2c00823
• Gross, Benjamin M.; Han, Seo-Jung; et al. (2023) A Convergent Total Synthesis of (+)-Ineleganolide; Journal of the American Chemical Society; Vol. 145; No. 14; 7763-7767; 10.1021/jacs.3c02142
• Shen, Cheng; Rawal, Siddarth; et al. (2023) Automatic detection of circulating tumor cells and cancer associated fibroblasts using deep learning; Scientific Reports; Vol. 13; 5708; PMCID PMC10082202; 10.1038/s41598-023-32955-0
• Rand, Alexander W.; Gonzalez, Kevin J.; et al. (2023) Total Synthesis of Strempeliopidine and Non-Natural Stereoisomers through a Convergent Petasis Borono-Mannich Reaction; Journal of the American Chemical Society; Vol. 145; No. 13; 7278-7287; PMCID PMC10281614; 10.1021/jacs.2c13146
• Gonzalez, Kevin J.; Rand, Alexander W.; et al. (2023) Development of a Non‐Directed Petasis‐Type Reaction by an Aromaticity‐Disrupting Strategy; Angewandte Chemie International Edition; Vol. 62; No. 14; e202218921; PMCID PMC10033435
• Shirzaei Sani, Ehsan; Xu, Changhao; et al. (2023) A stretchable wireless wearable bioelectronic system for multiplexed monitoring and combination treatment of infected chronic wounds; Science Advances; Vol. 9; No. 12; eadf7388; PMCID PMC10038347; 10.1126/sciadv.adf7388
• Guna, Alina; Hazu, Masami; et al. (2023) A TAle of Two Pathways: Tail-Anchored Protein Insertion at the Endoplasmic Reticulum; Cold Spring Harbor Perspectives in Biology; Vol. 15; No. 3; Art. No. a041252; PMCID PMC9979854; 10.1101/cshperspect.a041252
• Tompkins, H. G. D.; Ibañez-Mejia, M.; et al. (2023) Zircon growth experiments reveal limited equilibrium Zr isotope fractionation in magmas; Geochemical Perspectives Letters; Vol. 25; 25-29; 10.7185/geochemlet.2310
• Sharma, Saransh; Ramadi, Khalil B.; et al. (2023) Location-aware ingestible microdevices for wireless monitoring of gastrointestinal dynamics; Nature Electronics; Vol. 6; No. 3; 242-256; PMCID PMC10516531; 10.1038/s41928-023-00916-0
• Reimann, Christopher E.; Kim, Kelly E.; et al. (2023) What is a cross-coupling? An argument for a universal definition; Tetrahedron; Vol. 130; 133176; PMCID PMC9878734; 10.1016/j.tet.2022.133176
• Ousey, James; Boktor, Joseph C.; et al. (2023) Gut microbiota suppress feeding induced by palatable foods; Current Biology; Vol. 33; No. 1; 147-157.e7; PMCID PMC9839363; 10.1016/j.cub.2022.10.066
• Marquez, Ren T. C. and Tissot, François L. H. (2022) COSMO: Double spike optimization for sample-limited analyses of isotopically anomalous materials; Chemical Geology; Vol. 612; Art. No. 121095; 10.1016/j.chemgeo.2022.121095
• Tissot, François L. H.; Collinet, Max; et al. (2022) The case for the angrite parent body as the archetypal first-generation planetesimal: Large, reduced and Mg-enriched; Geochimica et Cosmochimica Acta; Vol. 338; 278-301; 10.1016/j.gca.2022.09.031
• Hafeman, Nicholas J.; Chan, Melinda; et al. (2022) Asymmetric Total Synthesis of Havellockate; Journal of the American Chemical Society; Vol. 144; No. 44; 20232-20236; PMCID PMC9997676; 10.1021/jacs.2c09583
• Abdel-Haq, Reem; Schlachetzki, Johannes C. M.; et al. (2022) A prebiotic diet modulates microglial states and motor deficits in α-synuclein overexpressing mice; eLife; Vol. 11; Art. No. e81453; PMCID PMC9668333; 10.7554/elife.81453
• Kipp, Michael A.; Li, Haoyu; et al. (2022) ²³⁸U, ²³⁵U and ²³⁴U in seawater and deep-sea corals: A high-precision reappraisal; Geochimica et Cosmochimica Acta; Vol. 336; 231-248; 10.1016/j.gca.2022.09.018
• Guna, Alina; Stevens, Taylor A.; et al. (2022) MTCH2 is a mitochondrial outer membrane protein insertase; Science; Vol. 378; No. 6617; 317-322; PMCID PMC9674023; 10.1126/science.add1856
• Goldstein, Elizabeth L.; Takada, Hirokazu; et al. (2022) Synthesis of enantioenriched 2,2-disubstituted pyrrolidines via sequential asymmetric allylic alkylation and ring contraction; Tetrahedron; Vol. 123; Art. No. 132940; PMCID PMC10038171; 10.1016/j.tet.2022.132940
• Turro, Raymond F.; Brandstätter, Marco; et al. (2022) Nickel‐Catalyzed Reductive Alkylation of Heteroaryl Imines; Angewandte Chemie International Edition; 10.1002/anie.202207597
• Murrow, Lyndsay M.; Weber, Robert J.; et al. (2022) Mapping hormone-regulated cell-cell interaction networks in the human breast at single-cell resolution; Cell Systems; Vol. 13; No. 8; 644-664.e8; PMCID PMC9590200; 10.1016/j.cels.2022.06.005
• Chen, Xinhong; Ravindra Kumar, Sripriya; et al. (2022) Engineered AAVs for non-invasive gene delivery to rodent and non-human primate nervous systems; Neuron; Vol. 110; No. 14; 2242-2257; PMCID PMC9308721; 10.1016/j.neuron.2022.05.003
• Wang, Zitong Jerry and Thomson, Matt (2022) Localization of signaling receptors maximizes cellular information acquisition in spatially structured natural environments; Cell Systems; Vol. 13; No. 7; 530-546; 10.1016/j.cels.2022.05.004
• Zhou, Haowen; Shen, Cheng; et al. (2022) Analysis of postreconstruction digital refocusing in Fourier ptychographic microscopy; Optical Engineering; Vol. 61; No. 7; Art. No. 073102; 10.1117/1.oe.61.7.073102
• Bley, Christopher J.; Nie, Si; et al. (2022) Architecture of the cytoplasmic face of the nuclear pore; Science; Vol. 376; No. 6598; Art. No. abm9129; PMCID PMC9348906; 10.1126/science.abm9129
• Petrovic, Stefan; Samanta, Dipanjan; et al. (2022) Architecture of the linker-scaffold in the nuclear pore; Science; Vol. 376; No. 6598; Art. No. abm9798; PMCID PMC9867570; 10.1126/science.abm9798
• Bostick, John W.; Schonhoff, Aubrey M.; et al. (2022) Gut microbiome-mediated regulation of neuroinflammation; Current Opinion in Immunology; Vol. 76; Art. No. 102177; PMCID PMC9167715; 10.1016/j.coi.2022.102177
• Bi, Xiaotian; Miao, Kun; et al. (2022) Alkyne-Tagged Raman Probes for Local Environmental Sensing by Hydrogen–Deuterium Exchange; Journal of the American Chemical Society; Vol. 144; No. 19; 8504-8514; 10.1021/jacs.2c01991
• Fan, Jiang-peng; Geng, Hui-zhen; et al. (2022) Age-dependent alterations in key components of the nigrostriatal dopaminergic system and distinct motor phenotypes; Acta Pharmacologica Sinica; Vol. 43; No. 4; 862-875; PMCID PMC8975991; 10.1038/s41401-021-00713-5
• Abedi, Mohamad H.; Yao, Michael S.; et al. (2022) Ultrasound-controllable engineered bacteria for cancer immunotherapy; Nature Communications; Vol. 13; Art. No. 1585; PMCID PMC8948203; 10.1038/s41467-022-29065-2
• Wang, Tongtong; Pool, Allan-Hermann; et al. (2022) Serotonergic fast lane from taste detection to preparatory digestive actions; Neuron; Vol. 110; No. 6; 907-909; 10.1016/j.neuron.2022.02.023
• Needham, Brittany D.; Funabashi, Masanori; et al. (2022) A gut-derived metabolite alters brain activity and anxiety behaviour in mice; Nature; Vol. 602; No. 7899; 647-653; PMCID PMC9170029; 10.1038/s41586-022-04396-8
• Ichiki, Takako; Wang, Tongtong; et al. (2022) Sensory representation and detection mechanisms of gut osmolality change; Nature; Vol. 602; No. 7897; 468-474; 10.1038/s41586-021-04359-5
• Schildknecht, Dominik; Popova, Anastasia N.; et al. (2022) Reinforcement learning reveals fundamental limits on the mixing of active particles; Soft Matter; Vol. 18; No. 3; 617-625; 10.1039/d1sm01400e
• Goertsen, David; Flytzanis, Nicholas C.; et al. (2021) AAV capsid variants with brain-wide transgene expression and decreased liver targeting after intravenous delivery in mouse and marmoset; Nature Neuroscience; Vol. 25; No. 1; 106-115; 10.1038/s41593-021-00969-4
• Bar-Zion, Avinoam; Nourmahnad, Atousa; et al. (2021) Acoustically triggered mechanotherapy using genetically encoded gas vesicles; Nature Nanotechnology; Vol. 16; No. 12; 1403-1412; 10.1038/s41565-021-00971-8
• Brown, David; Altermatt, Michael; et al. (2021) Deep Parallel Characterization of AAV Tropism and AAV-Mediated Transcriptional Changes via Single-Cell RNA Sequencing; Frontiers in Immunology; Vol. 12; Art. No. 730825; PMCID PMC8574206; 10.3389/fimmu.2021.730825
• Bhat, Prashant; Honson, Drew; et al. (2021) Nuclear compartmentalization as a mechanism of quantitative control of gene expression; Nature Reviews. Molecular Cell Biology; Vol. 22; No. 10; 653-670; 10.1038/s41580-021-00387-1
• Kahan, Anat; Greenbaum, Alon; et al. (2021) Light-guided sectioning for precise in situ localization and tissue interface analysis for brain-implanted optical fibers and GRIN lenses; Cell Reports; Vol. 36; No. 13; Art. No. 109744; PMCID PMC8552649; 10.1016/j.celrep.2021.109744
• Qu, Zijie; Schildknecht, Dominik; et al. (2021) Persistent fluid flows defined by active matter boundaries; Communications Physics; Vol. 4; Art. No. 198; 10.1038/s42005-021-00703-3
• Wong, Alice R.; Fastuca, Nicholas J.; et al. (2021) Total Syntheses of the C₁₉ Diterpenoid Alkaloids (–)-Talatisamine, (–)-Liljestrandisine, and (–)-Liljestrandinine by a Fragment Coupling Approach; ACS Central Science; Vol. 7; No. 8; 1311-1316; PMCID PMC8393236; 10.1021/acscentsci.1c00540
• Sawyer, Daniel P.; Bar-Zion, Avinoam; et al. (2021) Ultrasensitive ultrasound imaging of gene expression with signal unmixing; Nature Methods; Vol. 18; No. 8; 945-952; PMCID PMC8363212; 10.1038/s41592-021-01229-w
• Schildknecht, Dominik and Thomson, Matt (2021) Phenomenological model of motility by spatiotemporal modulation of active interactions; New Journal of Physics; Vol. 23; No. 8; Art. No. 083001; 10.1088/1367-2630/ac1144
• Sharma, Saransh; Telikicherla, Aditya; et al. (2021) Wireless 3D Surgical Navigation and Tracking System With 100μm Accuracy Using Magnetic-Field Gradient-Based Localization; IEEE Transactions on Medical Imaging; Vol. 40; No. 8; 2066-2079; 10.1109/tmi.2021.3071120
• Holman, K. R.; Stanko, A. M.; et al. (2021) Palladium-catalyzed cascade cyclizations involving C–C and C–X bond formation: strategic applications in natural product synthesis; Chemical Society Reviews; Vol. 50; No. 14; 7891-7908; 10.1039/d0cs01385d
• Wu, Wei-Li; Adame, Mark D.; et al. (2021) Microbiota regulate social behaviour via stress response neurons in the brain; Nature; Vol. 595; No. 7867; 409-414; PMCID PMC8346519; 10.1038/s41586-021-03669-y
• Yao, Yuxing; Jin, Zhiyang; et al. (2021) Self-assembly of protein superstructures by physical interactions under cytoplasm-like conditions; Biophysical Journal; Vol. 120; No. 13; 2701-2709; PMCID PMC8390860; 10.1016/j.bpj.2021.05.007
• Pleiner, Tino; Hazu, Masami; et al. (2021) WNK1 is an assembly factor for the human ER membrane protein complex; Molecular Cell; Vol. 81; No. 13; 2693-2704; PMCID PMC8254792; 10.1016/j.molcel.2021.04.013
• DeLano, Travis J.; Dibrell, Sara E.; et al. (2021) Nickel-catalyzed asymmetric reductive cross-coupling of α-chloroesters with (hetero)aryl iodides; Chemical Science; Vol. 12; No. 22; 7758-7762; PMCID PMC8188512; 10.1039/d1sc00822f
• Rabut, Claire; Wu, Di; et al. (2021) Ultrafast amplitude modulation for molecular and hemodynamic ultrasound imaging; Applied Physics Letters; Vol. 118; No. 24; Art. No. 244102; PMCID PMC8205510; 10.1063/5.0050807
• Norman, Sumner L.; Maresca, David; et al. (2021) Single-trial decoding of movement intentions using functional ultrasound neuroimaging; Neuron; Vol. 109; No. 9; 1554-1566; PMCID PMC8105283; 10.1016/j.neuron.2021.03.003
• Dutka, Przemysław; Malounda, Dina; et al. (2021) Measuring gas vesicle dimensions by electron microscopy; Protein Science; Vol. 30; No. 5; 1081-1086; PMCID PMC8040859; 10.1002/pro.4056
• Farhadi, Arash; Sigmund, Felix; et al. (2021) Genetically encodable materials for non-invasive biological imaging; Nature Materials; Vol. 20; No. 5; 585-592; 10.1038/s41563-020-00883-3
• Buss, Marjorie T.; Ramesh, Pradeep; et al. (2021) Spatial Control of Probiotic Bacteria in the Gastrointestinal Tract Assisted by Magnetic Particles; Advanced Materials; Vol. 33; No. 17; Art. No. 2007473; 10.1002/adma.202007473
• Morais, Livia H.; Schreiber, Henry L., IV; et al. (2021) The gut microbiota–brain axis in behaviour and brain disorders; Nature Reviews Microbiology; Vol. 19; No. 4; 241-255; 10.1038/s41579-020-00460-0
• Cho, Jounhong Ryan; Chen, Xinhong; et al. (2021) Dorsal Raphe Dopamine Neurons Signal Motivational Salience Dependent on Internal State, Expectation, and Behavioral Context; Journal of Neuroscience; Vol. 41; No. 12; 2645-2655; PMCID PMC8018733; 10.1523/JNEUROSCI.2690-20.2021
• Nakayama, Yasuaki; Maser, Michael R.; et al. (2021) Total Synthesis of Ritterazine B; Journal of the American Chemical Society; Vol. 143; No. 11; 4187-4192; 10.1021/jacs.1c01372
• Dibrell, Sara E.; Tao, Yujia; et al. (2021) Synthesis of Complex Diterpenes: Strategies Guided by Oxidation Pattern Analysis; Accounts of Chemical Research; Vol. 54; No. 6; 1360-1373; PMCID PMC9169581; 10.1021/acs.accounts.0c00858
• Chen, Kuan-Chang; Kuo, William Wei-Ting; et al. (2021) A 60-Gb/s PAM4 Wireline Receiver With 2-Tap Direct Decision Feedback Equalization Employing Track-and-Regenerate Slicers in 28-nm CMOS; IEEE Journal of Solid-State Circuits; Vol. 56; No. 3; 750-762; 10.1109/jssc.2020.3025285
• Talkhooncheh, Arian Hashemi; Yu, You; et al. (2021) A Biofuel-Cell-Based Energy Harvester With 86% Peak Efficiency and 0.25-V Minimum Input Voltage Using Source-Adaptive MPPT; IEEE Journal of Solid-State Circuits; Vol. 56; No. 3; 715-728; 10.1109/jssc.2020.3035491
• Maser, Michael R.; Cui, Alexander Y.; et al. (2021) Multilabel Classification Models for the Prediction of Cross-Coupling Reaction Conditions; Journal of Chemical Information and Modeling; Vol. 61; No. 1; 156-166; 10.1021/acs.jcim.0c01234
• Unger, Elizabeth K.; Keller, Jacob P.; et al. (2020) Directed Evolution of a Selective and Sensitive Serotonin Sensor via Machine Learning; Cell; Vol. 183; No. 7; 1986-2002; PMCID PMC8025677; 10.1016/j.cell.2020.11.040
• Dobreva, Tatyana; Brown, David; et al. (2020) Single cell profiling of capillary blood enables out of clinic human immunity studies; Scientific Reports; Vol. 10; Art. No. 20540; PMCID PMC7688970; 10.1038/s41598-020-77073-3
• Banerjee, Abhik K.; Blanco, Mario R.; et al. (2020) SARS-CoV-2 disrupts splicing, translation, and protein trafficking to suppress host defenses; Cell; Vol. 183; No. 5; 1325-1339; PMCID PMC7543886; 10.1016/j.cell.2020.10.004
• Cowper, Nicholas G. W.; Hesse, Matthew J.; et al. (2020) A copper-catalyzed asymmetric oxime propargylation enables the synthesis of the gliovirin tetrahydro-1,2-oxazine core; Chemical Science; Vol. 11; No. 43; 11897-11901; PMCID PMC8162951; 10.1039/d0sc04802j
• Chen, Sisi; Rivaud, Paul; et al. (2020) Dissecting heterogeneous cell populations across drug and disease conditions with PopAlign; Proceedings of the National Academy of Sciences of the United States of America; Vol. 117; No. 46; 28784-28794; PMCID PMC7682438; 10.1073/pnas.2005990117
• Blom, Annet E. M.; Su, Justin Y.; et al. (2020) Synthesis and Biological Evaluation of Pyrroloindolines as Positive Allosteric Modulators of the α1β2γ2 GABA_A Receptor; ACS Medicinal Chemistry Letters; Vol. 11; No. 11; 2204-2211; PMCID PMC7667864; 10.1021/acsmedchemlett.0c00340
• Farhadi, Arash; Bedrossian, Manuel; et al. (2020) Genetically Encoded Phase Contrast Agents for Digital Holographic Microscopy; Nano Letters; Vol. 20; No. 11; 8127-8134; 10.1021/acs.nanolett.0c03159
• Rabut, Claire; Yoo, Sangjin; et al. (2020) Ultrasound Technologies for Imaging and Modulating Neural Activity; Neuron; Vol. 108; No. 1; 93-110; 10.1016/j.neuron.2020.09.003
• Ling, Bill; Lee, Justin; et al. (2020) Biomolecular Ultrasound Imaging of Phagolysosomal Function; ACS Nano; Vol. 14; No. 9; 12210-12221; PMCID PMC7685203; 10.1021/acsnano.0c05912
• Lakshmanan, Anupama; Jin, Zhiyang; et al. (2020) Acoustic biosensors for ultrasound imaging of enzyme activity; Nature Chemical Biology; Vol. 16; No. 9; 988-996; PMCID PMC7713704; 10.1038/s41589-020-0591-0
• Abedi, Mohamad H.; Lee, Justin; et al. (2020) Thermal Control of Engineered T-cells; ACS Synthetic Biology; Vol. 9; No. 8; 1941-1950; 10.1021/acssynbio.0c00238
• Poremba, Kelsey E.; Dibrell, Sara E.; et al. (2020) Nickel-Catalyzed Enantioselective Reductive Cross-Coupling Reactions; ACS Catalysis; Vol. 10; No. 15; 8237-8246; PMCID PMC7470226; 10.1021/acscatal.0c01842
• Uran, Arda; Leblebici, Yusuf; et al. (2020) An AC-Coupled Wideband Neural Recording Front-End With Sub-1 mm² × fJ/conv-step Efficiency and 0.97 NEF; IEEE Solid-State Circuits Letters; Vol. 3; 258-261; 10.1109/lssc.2020.3013993
• Lu, George J.; Chou, Li-dek; et al. (2020) Genetically Encodable Contrast Agents for Optical Coherence Tomography; ACS Nano; Vol. 14; No. 7; 7823-7831; PMCID PMC7685218; 10.1021/acsnano.9b08432
• Pleiner, Tino; Pinton Tomaleri, Giovani; et al. (2020) Structural basis for membrane insertion by the human ER membrane protein complex; Science; Vol. 369; No. 6502; 433-436; PMCID PMC7547852; 10.1126/science.abb5008
• Kumar, Shailabh; Park, Haeri; et al. (2020) Overcoming evanescent field decay using 3D-tapered nanocavities for on-chip targeted molecular analysis; Nature Communications; Vol. 11; Art. No. 2930; PMCID PMC7287113; 10.1038/s41467-020-16813-5
• Donaldson, Gregory P.; Chou, Wen-Chi; et al. (2020) Spatially distinct physiology of Bacteroides fragilis within the proximal colon of gnotobiotic mice; Nature Microbiology; Vol. 5; No. 5; 746-756; 10.1038/s41564-020-0683-3
• Ravindra Kumar, Sripriya; Miles, Timothy F.; et al. (2020) Multiplexed Cre-dependent selection yields systemic AAVs for targeting distinct brain cell types; Nature Methods; Vol. 17; No. 5; 541-550; PMCID PMC7219404; 10.1038/s41592-020-0799-7
• Dibrell, Sara E.; Maser, Michael R.; et al. (2020) SeO₂-Mediated Oxidative Transposition of Pauson–Khand Products; Journal of the American Chemical Society; Vol. 142; No. 14; 6483-6487; 10.1021/jacs.9b13818
• Maresca, David; Payen, Thomas; et al. (2020) Acoustic biomolecules enhance hemodynamic functional ultrasound imaging of neural activity; NeuroImage; Vol. 209; Art. No. 116467; PMCID PMC6955150; 10.1016/j.neuroimage.2019.116467
• Mobbs, George W. and Hoelz, André (2020) Nucleoporin Condensates Drive Nuclear Pore Complex Assembly in Oocytes; Trends in Biochemical Sciences; Vol. 45; No. 4; 278-280; PMCID PMC7505689; 10.1016/j.tibs.2020.01.009
• Inglis, Alison J.; Page, Katharine R.; et al. (2020) Differential modes of orphan subunit recognition for the WRB/CAML complex; Cell Reports; Vol. 30; No. 11; 3691-3698; PMCID PMC7147533; 10.1016/j.celrep.2020.02.084
• Challis, Collin; Hori, Acacia; et al. (2020) Gut-seeded α-synuclein fibrils promote gut dysfunction and brain pathology specifically in aged mice; Nature Neuroscience; Vol. 23; No. 3; 327-336; PMCID PMC7065967; 10.1038/s41593-020-0589-7
• Sampson, Timothy R.; Challis, Collin; et al. (2020) A gut bacterial amyloid promotes α-synuclein aggregation and motor impairment in mice; eLife; Vol. 9; Art. No. e53111; PMCID PMC7012599; 10.7554/elife.53111
• Patriarchi, Tommaso; Cho, Jounhong Ryan; et al. (2019) Imaging neuromodulators with high spatiotemporal resolution using genetically encoded indicators; Nature Protocols; Vol. 14; No. 12; 3471-3505; 10.1038/s41596-019-0239-2
• Bedbrook, Claire N.; Yang, Kevin K.; et al. (2019) Machine learning-guided channelrhodopsin engineering enables minimally-invasive optogenetics; Nature Methods; Vol. 16; No. 11; 1176-1184; PMCID PMC6858556; 10.1038/s41592-019-0583-8
• Hofstra, Julie L.; Poremba, Kelsey E.; et al. (2019) Nickel-Catalyzed Conversion of Enol Triflates into Alkenyl Halides; Angewandte Chemie International Edition; Vol. 58; No. 42; 14901-14905; PMCID PMC7179072; 10.1002/anie.201906815
• Farhadi, Arash; Ho, Gabrielle H.; et al. (2019) Ultrasound Imaging of Gene Expression in Mammalian Cells; Science; Vol. 365; No. 6460; 1469-1475; PMCID PMC6860372; 10.1126/science.aax4804
• Han, Arthur; Tao, Yujia; et al. (2019) A 16-step synthesis of the isoryanodane diterpene (+)-perseanol; Nature; Vol. 573; No. 7775; 563-567; PMCID PMC7123484; 10.1038/s41586-019-1580-x
• Robinson, J. Elliott; Coughlin, Gerard M.; et al. (2019) Optical dopamine monitoring with dLight1 reveals mesolimbic phenotypes in a mouse model of neurofibromatosis type 1; eLife; Vol. 8; Art. No. e48983; PMCID PMC6819083; 10.7554/elife.48983
• Oikonomou, Grigorios; Altermatt, Michael; et al. (2019) The Serotonergic Raphe Promote Sleep in Zebrafish and Mice; Neuron; Vol. 103; No. 4; 686-701; PMCID PMC6706304; 10.1016/j.neuron.2019.05.038
• Ross, Tyler D.; Lee, Heun Jin; et al. (2019) Controlling Organization and Forces in Active Matter Through Optically-Defined Boundaries; Nature; Vol. 572; No. 7768; 224-229; PMCID PMC6719720; 10.1038/s41586-019-1447-1
• DeLano, Travis J. and Reisman, Sarah E. (2019) Enantioselective Electroreductive Coupling of Alkenyl and Benzyl Halides via Nickel Catalysis; ACS Catalysis; Vol. 9; No. 8; 6751-6754; PMCID PMC7190267; 10.1021/acscatal.9b01785
• Lin, Daniel H. and Hoelz, André (2019) The Structure of the Nuclear Pore Complex (An Update); Annual Review of Biochemistry; Vol. 88; 725-783; PMCID PMC6588426; 10.1146/annurev-biochem-062917-011901
• Sharon, Gil; Cruz, Nikki Jamie; et al. (2019) Human Gut Microbiota from Autism Spectrum Disorder Promote Behavioral Symptoms in Mice; Cell; Vol. 177; No. 6; 1600-1618; PMCID PMC6993574; 10.1016/j.cell.2019.05.004
• Rajendran, Pradeep S.; Challis, Rosemary C.; et al. (2019) Identification of peripheral neural circuits that regulate heart rate using optogenetic and viral vector strategies; Nature Communications; Vol. 10; Art. No. 1944; PMCID PMC6486614; 10.1038/s41467-019-09770-1
• Zeng, Jianxiong; Wang, Yaoming; et al. (2019) TRIM9-Mediated Resolution of Neuroinflammation Confers Neuroprotection upon Ischemic Stroke in Mice; Cell Reports; Vol. 27; No. 2; 549-560; PMCID PMC6485958; 10.1016/j.celrep.2018.12.055
• Lee, Jeong Oen; Narasimhan, Vinayak; et al. (2019) Fabry-Pérot optical sensor and portable detector for monitoring high-resolution ocular hemodynamics; IEEE Photonics Technology Letters; Vol. 31; No. 6; 423-426; PMCID PMC6879107; 10.1109/lpt.2019.2896840
• Beck, Jordan C.; Lacker, Caitlin R.; et al. (2019) A modular approach to prepare enantioenriched cyclobutanes: synthesis of (+)-rumphellaone A; Chemical Science; Vol. 10; No. 8; 2315-2319; PMCID PMC6385545; 10.1039/c8sc05444d
• Challis, Rosemary C.; Ravindra Kumar, Sripriya; et al. (2019) Systemic AAV vectors for widespread and targeted gene delivery in rodents; Nature Protocols; Vol. 14; No. 2; 379-414; 10.1038/s41596-018-0097-3
• Abdel-Haq, Reem; Schlachetzki, Johannes C. M.; et al. (2019) Microbiome–microglia connections via the gut–brain axis; Journal of Experimental Medicine; Vol. 216; No. 1; 41-59; PMCID PMC6314531; 10.1084/jem.20180794
• Griffiths, Jessica A. and Mazmanian, Sarkis K. (2018) Emerging evidence linking the gut microbiome to neurologic disorders; Genome Medicine; Vol. 10; Art. No. 98; PMCID PMC6302417; 10.1186/s13073-018-0609-3
• Yang, Daejong; Afroosheh, Sajjad; et al. (2018) Glucose Sensing Using Surface-Enhanced Raman-Mode Constraining; Analytical Chemistry; Vol. 90; No. 24; 14269-14278; 10.1021/acs.analchem.8b03420
• Shoaran, Mahsa; Haghi, Benyamin Allahgholizadeh; et al. (2018) Energy-Efficient Classification for Resource-Constrained Biomedical Applications; IEEE Journal on Emerging and Selected Topics in Circuits and Systems; Vol. 8; No. 4; 693-707; 10.1109/JETCAS.2018.2844733
• Schretter, Catherine E.; Vielmetter, Jost; et al. (2018) A gut microbial factor modulates locomotor behavior in Drosophila; Nature; Vol. 563; No. 7731; 402-406; PMCID PMC6237646; 10.1038/s41586-018-0634-9
• Lee, Yun Kyung; Mehrabian, Parpi; et al. (2018) The Protective Role of Bacteroides fragilis in a Murine Model of Colitis-Associated Colorectal Cancer; mSphere; Vol. 3; No. 6; Art. No. e00587-18; PMCID PMC6236802; 10.1128/msphere.00587-18
• Maresca, David; Sawyer, Daniel P.; et al. (2018) Nonlinear X-Wave Ultrasound Imaging of Acoustic Biomolecules; Physical Review X; Vol. 8; No. 4; Art. No. 041002; PMCID PMC8147876; 10.1103/physrevx.8.041002
• Ramesh, Pradeep; Hwang, Son-Jong; et al. (2018) Ultraparamagnetic cells formed through intracellular oxidation and chelation of paramagnetic iron; Angewandte Chemie International Edition; Vol. 57; No. 38; 12385-12389; 10.1002/anie.201805042
• Assumpcao, Daniel; Kumar, Shailabh; et al. (2018) High-performance flexible metal-on-silicon thermocouple; Scientific Reports; Vol. 8; Art. No. 13725; PMCID PMC6137040; 10.1038/s41598-018-32169-9
• Su, Justin Y.; Grünenfelder, Denise C.; et al. (2018) Radical Deoxychlorination of Cesium Oxalates for the Synthesis of Alkyl Chlorides; Organic Letters; Vol. 20; No. 16; 4912-4916; 10.1021/acs.orglett.8b02045
• Lu, George J.; Farhadi, Arash; et al. (2018) Proteins, air and water: reporter genes for ultrasound and magnetic resonance imaging; Current Opinion in Chemical Biology; Vol. 45; 57-63; PMCID PMC6076850; 10.1016/j.cbpa.2018.02.011
• Farhadi, Arash; Ho, Gabrielle; et al. (2018) Recombinantly Expressed Gas Vesicles as Nanoscale Contrast Agents for Ultrasound and Hyperpolarized MRI; AIChE Journal; Vol. 64; No. 8; 2927-2933; PMCID PMC6289519; 10.1002/aic.16138
• Xu, Chen; Han, Arthur; et al. (2018) An Oxidative Dearomatization Approach To Prepare the Pentacyclic Core of Ryanodol; Organic Letters; Vol. 20; No. 13; 3793-3796; PMCID PMC6103443; 10.1021/acs.orglett.8b01387
• Rodger, Damien C.; Shapero, Aubrey; et al. (2018) Precision Wireless Implantable Continuous Intraocular Pressure Sensors Utilizing Parylene-on-oil Encapsulation; Investigative Ophthalmology and Visual Science; Vol. 59; No. 9; Art. No. 1997
• Bedbrook, Claire N.; Deverman, Benjamin E.; et al. (2018) Viral Strategies for Targeting the Central and Peripheral Nervous Systems; Annual Review of Neuroscience; Vol. 41; 323-348; 10.1146/annurev-neuro-080317-062048
• Szablowski, Jerzy O.; Lee-Gosselin, Audrey; et al. (2018) Acoustically Targeted Chemogenetics for Noninvasive Control of Neural Circuits; Nature Biomedical Engineering; Vol. 2; No. 7; 475-484; 10.1038/s41551-018-0258-2
• Patriarchi, Tommaso; Cho, Jounhong Ryan; et al. (2018) Ultrafast neuronal imaging of dopamine dynamics with designed genetically encoded sensors; Science; Vol. 360; No. 6396; Art. No. eaat4422; PMCID PMC6287765; 10.1126/science.aat4422
• Lin, Daniel H.; Correia, Ana R.; et al. (2018) Structural and functional analysis of mRNA export regulation by the nuclear pore complex; Nature Communications; Vol. 9; Art. No. 2319; PMCID PMC5998080; 10.1038/s41467-018-04459-3
• Sato, Tomokazu; Shapiro, Mikhail G.; et al. (2018) Ultrasonic Neuromodulation Causes Widespread Cortical Activation via an Indirect Auditory Mechanism; Neuron; Vol. 98; No. 5; 1031-1041; PMCID PMC8127805; 10.1016/j.neuron.2018.05.009
• Chapman, Lauren M.; Beck, Jordan C.; et al. (2018) Evolution of a Strategy for the Enantioselective Total Synthesis of (+)-Psiguadial B; Journal of Organic Chemistry; Vol. 83; No. 11; 6066-6085; PMCID PMC5990278; 10.1021/acs.joc.8b00728
• Narasimhan, Vinayak; Siddique, Radwanul Hasan; et al. (2018) Multifunctional biophotonic nanostructures inspired by the longtail glasswing butterfly for medical devices; Nature Nanotechnology; Vol. 13; No. 6; 512-519; PMCID PMC5992053; 10.1038/s41565-018-0111-5
• Maresca, David; Lakshmanan, Anupama; et al. (2018) Biomolecular Ultrasound and Sonogenetics; Annual Review of Chemical and Biomolecular Engineering; Vol. 9; 229-252; PMCID PMC6086606; 10.1146/annurev-chembioeng-060817-084034
• Donaldson, G. P.; Ladinsky, M. S.; et al. (2018) Gut microbiota utilize immunoglobulin A for mucosal colonization; Science; Vol. 360; No. 6390; 795-800; PMCID PMC5973787; 10.1126/science.aaq0926
• Lu, George Jiaozhi; Farhadi, Arash; et al. (2018) Acoustically modulated magnetic resonance imaging of gas-filled protein nanostructures; Nature Materials; Vol. 17; No. 5; 456-463; PMCID PMC6015773; 10.1038/s41563-018-0023-7
• Gradinaru, Viviana; Treweek, Jennifer; et al. (2018) Hydrogel-Tissue Chemistry: Principles and Applications; Annual Review of Biophysics; Vol. 47; 355-376; PMCID PMC6359929; 10.1146/annurev-biophys-070317-032905
• Needham, Brittany D.; Tang, Weiyi; et al. (2018) Searching for the gut microbial contributing factors to social behavior in rodent models of autism spectrum disorder; Developmental Neurobiology; Vol. 78; No. 5; 474-499; 10.1002/dneu.22581
• Han, Samuel J.; Park, Haeri; et al. (2018) Effect of optical aberrations on intraocular pressure measurements using a microscale optical implant in ex vivo rabbit eyes; Journal of Biomedical Optics; Vol. 23; No. 4; Art. No. 047002; 10.1117/1.JBO.23.4.047002
• Skubák, Pavol; Araç, Demet; et al. (2018) A new MR-SAD algorithm for the automatic building of protein models from low-resolution X-ray data and a poor starting model; IUCrJ; Vol. 5; No. 2; 166-171; PMCID PMC5947721; 10.1107/S2052252517017961
• Robinson, J. Elliott and Gradinaru, Viviana (2018) Dopaminergic dysfunction in neurodevelopmental disorders: recent advances and synergistic technologies to aid basic research; Current Opinion in Neurobiology; Vol. 48; 17-29; PMCID PMC5825239; 10.1016/j.conb.2017.08.003
• Farney, Elliot P.; Feng, Sean S.; et al. (2018) Total Synthesis of (+)-Pleuromutilin; Journal of the American Chemical Society; Vol. 140; No. 4; 1267-1270; PMCID PMC5988231; 10.1021/jacs.7b13260
• Cho, Hyunjun; Kumar, Shailabh; et al. (2018) Surface-Enhanced Raman Spectroscopy-Based Label-Free Insulin Detection at Physiological Concentrations for Analysis of Islet Performance; ACS Sensors; Vol. 3; No. 1; 65-71; 10.1021/acssensors.7b00864
• Hofstra, Julie L.; Cherney, Alan H.; et al. (2018) Synthesis of Enantioenriched Allylic Silanes via Nickel-Catalyzed Reductive Cross-Coupling; Journal of the American Chemical Society; Vol. 140; No. 1; 139-142; PMCID PMC5851001; 10.1021/jacs.7b11707
• Davis, Hunter C.; Ramesh, Pradeep; et al. (2018) Mapping the microscale origins of magnetic resonance image contrast with subcellular diamond magnetometry; Nature Communications; Vol. 9; Art. No. 131; PMCID PMC5760582; 10.1038/s41467-017-02471-7
• Bourdeau, Raymond W.; Lee-Gosselin, Audrey; et al. (2018) Acoustic reporter genes for noninvasive imaging of microorganisms in mammalian hosts; Nature; Vol. 553; No. 7686; 86-90; PMCID PMC5920530; 10.1038/nature25021
• Ruan, Haowen; Brake, Joshua; et al. (2017) Deep tissue optical focusing and optogenetic modulation with time-reversed ultrasonically encoded light; Science Advances; Vol. 3; No. 12; Art. No. eaao5520; PMCID PMC5722648; 10.1126/sciadv.aao5520
• Kim, Kun Ho; Lee, Jeong Oen; et al. (2017) Real-Time In Vivo Intraocular Pressure Monitoring using an Optomechanical Implant and an Artificial Neural Network; IEEE Sensors Journal; Vol. 17; No. 22; 7394-7404; PMCID PMC5798645; 10.1109/JSEN.2017.2760140
• Mukherjee, Arnab; Davis, Hunter C.; et al. (2017) Biomolecular MRI reporters: Evolution of new mechanisms; Progress in Nuclear Magnetic Resonance Spectroscopy; Vol. 102-103; 32-42; PMCID PMC5726449; 10.1016/j.pnmrs.2017.05.002
• Bedbrook, Claire N.; Yang, Kevin K.; et al. (2017) Machine learning to design integral membrane channelrhodopsins for efficient eukaryotic expression and plasma membrane localization; PLOS Computational Biology; Vol. 13; No. 10; Art. No. e1005786; PMCID PMC5695628; 10.1371/journal.pcbi.1005786
• Nath, Ravi D.; Bedbrook, Claire N.; et al. (2017) The Jellyfish Cassiopea Exhibits a Sleep-like State; Current Biology; Vol. 27; No. 19; 2984-2990; PMCID PMC5653286; 10.1016/j.cub.2017.08.014
• Cekanaviciute, Egle; Yoo, Bryan B.; et al. (2017) Gut bacteria from multiple sclerosis patients modulate human T cells and exacerbate symptoms in mouse models; Proceedings of the National Academy of Sciences of the United States of America; Vol. 114; No. 40; 10713-10718; PMCID PMC5635915; 10.1073/pnas.1711235114
• Piraner, Dan I.; Farhadi, Arash; et al. (2017) Going Deeper: Biomolecular Tools for Acoustic and Magnetic Imaging and Control of Cellular Function; Biochemistry; Vol. 56; No. 39; 5202-5209; PMCID PMC6058970; 10.1021/acs.biochem.7b00443
• Lakshmanan, Anupama; Lu, George J.; et al. (2017) Preparation of biogenic gas vesicle nanostructures for use as contrast agents for ultrasound and MRI; Nature Protocols; Vol. 12; No. 10; 2050-2080; PMCID PMC6185898; 10.1038/nprot.2017.081
• Greenbaum, Alon; Jang, Min J.; et al. (2017) Q&A: How can advances in tissue clearing and optogenetics contribute to our understanding of normal and diseased biology?; BMC Biology; Vol. 15; Art. No. 87; PMCID PMC5613628; 10.1186/s12915-017-0421-3
• Monge, Manuel; Lee-Gosselin, Audrey; et al. (2017) Localization of Microscale Devices In Vivo using Addressable Transmitters Operated as Magnetic Spins; Nature Biomedical Engineering; Vol. 1; No. 9; 736-744; 10.1038/s41551-017-0129-2
• Edelblum, Karen L.; Sharon, Gil; et al. (2017) The microbiome activates CD4 T-cell-mediated immunity to compensate for increased intestinal permeability; Cellular and Molecular Gastroenterology and Hepatology; Vol. 4; No. 2; 285-297; PMCID PMC5540699; 10.1016/j.jcmgh.2017.06.001
• Kowarsch, Robert; Janzen, Jürgen; et al. (2017) Scanning confocal vibrometer microscope for vibration analysis of energy-harvesting MEMS in wearables; Technisches Messen; Vol. 84; No. S1; S131-S137; 10.1515/teme-2017-0042
• Chan, Ken Y.; Jang, Min J.; et al. (2017) Engineered AAVs for efficient noninvasive gene delivery to the central and peripheral nervous systems; Nature Neuroscience; Vol. 20; No. 8; 1172-1179; PMCID PMC5529245; 10.1038/nn.4593
• Maley, Adam M.; Lu, George J.; et al. (2017) Characterizing Single Polymeric and Protein Nanoparticles with Surface Plasmon Resonance Imaging Measurements; ACS Nano; Vol. 11; No. 7; 7447-7456; PMCID PMC5531002; 10.1021/acsnano.7b03859
• Koo, Sukmo; Siddique, Radwanul Hasan; et al. (2017) Quantitative analysis of a III-V tapered horn-shaped metal-clad nano-cavity as an on-chip light source; AIP Advances; Vol. 7; No. 7; Art. No. 075017; 10.1063/1.4995590
• Cho, Jounhong Ryan; Treweek, Jennifer B.; et al. (2017) Dorsal Raphe Dopamine Neurons Modulate Arousal and Promote Wakefulness by Salient Stimuli; Neuron; Vol. 94; No. 6; 1205-1219; 10.1016/j.neuron.2017.05.020
• Yoo, Bryan B. and Mazmanian, Sarkis K. (2017) The Enteric Network: Interactions between the Immune and Nervous Systems of the Gut; Immunity; Vol. 46; No. 6; 910-926; PMCID PMC5551410; 10.1016/j.immuni.2017.05.011
• Yang, Daejong; Cho, Hyunjun; et al. (2017) Simple, Large-Scale Fabrication of Uniform Raman-Enhancing Substrate with Enhancement Saturation; ACS Applied Materials & Interfaces; Vol. 9; No. 22; 19092-19101; 10.1021/acsami.7b03239
• Huber, Ferdinand M.; Greenblatt, Sarah M.; et al. (2017) Histone-Binding of DPF2 Mediates Its Repressive Role in Myeloid Differentiation; Proceedings of the National Academy of Sciences of the United States of America; Vol. 114; No. 23; 6016-6021; PMCID PMC5468650; 10.1073/pnas.1700328114
• Gilad, Assaf A. and Shapiro, Mikhail G. (2017) Molecular Imaging in Synthetic Biology, and Synthetic Biology in Molecular Imaging; Molecular Imaging and Biology; Vol. 19; No. 3; 373-378; PMCID PMC6058969; 10.1007/s11307-017-1062-1
• Allen, William E.; Kauvar, Isaac V.; et al. (2017) Global Representations of Goal-Directed Behavior in Distinct Cell Types of Mouse Neocortex; Neuron; Vol. 94; No. 4; 891-907; PMCID PMC5723385; 10.1016/j.neuron.2017.04.017
• Wu, Wei-Li; Hsiao, Elaine Y.; et al. (2017) The Placental Interleukin-6 Signaling Controls Fetal Brain Development and Behavior; Brain, Behavior, and Immunity; Vol. 62; 11-23; PMCID PMC5373986; 10.1016/j.bbi.2016.11.007
• Poremba, Kelsey E.; Kadunce, Nathaniel T.; et al. (2017) Nickel-Catalyzed Asymmetric Reductive Cross-Coupling To Access 1,1-Diarylalkanes; Journal of the American Chemical Society; Vol. 139; No. 16; 5684-5687; PMCID PMC5851002; 10.1021/jacs.7b01705
• Greenbaum, Alon; Chan, Ken Y.; et al. (2017) Bone CLARITY: Clearing, imaging, and computational analysis of osteoprogenitors within intact bone marrow; Science Translational Medicine; Vol. 9; No. 387; Art. No. eaah6518; 10.1126/scitranslmed.aah6518
• Xu, Chen; Han, Arthur; et al. (2017) Chemical Synthesis of (+)-Ryanodine and (+)-20-Deoxyspiganthine; ACS Central Science; Vol. 3; No. 4; 278-282; PMCID PMC5409222; 10.1021/acscentsci.6b00361
• Wang, Haoxuan; Regan, Clinton J.; et al. (2017) Enantioselective Synthesis of (−)-Acetylapoaranotin; Organic Letters; Vol. 19; No. 7; 1698-1701; PMCID PMC5387676; 10.1021/acs.orglett.7b00418
• Lee, Jeong Oen; Narasimhan, Vinayak; et al. (2017) Biocompatible Multifunctional Black-Silicon for Implantable Intraocular Sensor; Advanced Healthcare Materials; Vol. 6; No. 4; Art. No. 1601356; 10.1002/adhm.201601356
• Maresca, David; Lakshmanan, Anupama; et al. (2017) Nonlinear ultrasound imaging of nanoscale acoustic biomolecules; Applied Physics Letters; Vol. 110; No. 7; Art. No. 073704; PMCID PMC5315666; 10.1063/1.4976105
• Huber, Ferdinand M. and Hoelz, André (2017) Molecular basis for protection of ribosomal protein L4 from cellular degradation; Nature Communications; Vol. 8; Art. No. 14354; PMCID PMC5296656; 10.1038/ncomms14354
• Barskiy, Danila A.; Coffey, Aaron M; et al. (2017) NMR Hyperpolarization Techniques of Gases; Chemistry: a European Journal; Vol. 23; No. 4; 725-751; PMCID PMC5462469; 10.1002/chem.201603884
• Piraner, Dan I.; Abedi, Mohamad H.; et al. (2017) Tunable thermal bioswitches for in vivo control of microbial therapeutics; Nature Chemical Biology; Vol. 13; No. 1; 75-80; 10.1038/nchembio.2233
• Mukherjee, Arnab; Wu, Di; et al. (2016) Non-invasive imaging using reporter genes altering cellular water permeability; Nature Communications; Vol. 7; Art. No. 13891; PMCID PMC5196229; 10.1038/ncomms13891
• Mazmanian, Sarkis K.; Sampson, Timothy R.; et al. (2016) Gut Microbiota Regulate Motor Deficits and Neuroinflammation in a Model of Parkinson’s Disease; Cell; Vol. 167; No. 6; 1469-1480; PMCID PMC5718049; 10.1016/j.cell.2016.11.018
• Engreitz, Jesse M.; Ollikainen, Noah; et al. (2016) Long non-coding RNAs: spatial amplifiers that control nuclear structure and gene expression; Nature Reviews. Molecular Cell Biology; Vol. 17; No. 12; 756-770; 10.1038/nrm.2016.126
• Sharon, Gil; Sampson, Timothy R.; et al. (2016) The Central Nervous System and the Gut Microbiome; Cell; Vol. 167; No. 4; 915-932; PMCID PMC5127403; 10.1016/j.cell.2016.10.027
• DePas, William H.; Starwalt-Lee, Ruth; et al. (2016) Exposing the Three-Dimensional Biogeography and Metabolic States of Pathogens in Cystic Fibrosis Sputum via Hydrogel Embedding, Clearing, and rRNA Labeling; mBio; Vol. 7; No. 5; e00796-16; PMCID PMC5040109; 10.1128/mBio.00796-16
• Chuang, Kangway V.; Kieffer, Madeleine E.; et al. (2016) A Mild and General Larock Indolization Protocol for the Preparation of Unnatural Tryptophans; Organic Letters; Vol. 18; No. 18; 4750-4753; PMCID PMC5505074; 10.1021/acs.orglett.6b02477
• Chuang, Kangway V.; Xu, Chen; et al. (2016) A 15-step synthesis of (+)-ryanodol; Science; Vol. 353; No. 6302; 912-915; PMCID PMC5505075; 10.1126/science.aag1028
• Lakshmanan, Anupama; Farhadi, Arash; et al. (2016) Molecular Engineering of Acoustic Protein Nanostructures; ACS Nano; Vol. 10; No. 8; 7314-7322; PMCID PMC6058967; 10.1021/acsnano.6b03364
• Chapman, Lauren M.; Beck, Jordan C.; et al. (2016) Enantioselective Total Synthesis of (+)-Psiguadial B; Journal of the American Chemical Society; Vol. 138; No. 31; 9803-9806; 10.1021/jacs.6b07229
• Shah, Sheel; Lubeck, Eric; et al. (2016) Single-molecule RNA detection at depth via hybridization chain reaction and tissue hydrogel embedding and clearing; Development; Vol. 143; No. 15; 2862-2867; PMCID PMC5004914; 10.1242/dev.138560
• Treweek, Jennifer Brooke and Gradinaru, Viviana (2016) Extracting structural and functional features of widely distributed biological circuits with single cell resolution via tissue clearing and delivery vectors; Current Opinion in Biotechnology; Vol. 40; 193-207; PMCID PMC4975678; 10.1016/j.copbio.2016.03.012
• Chu, Huitung; Khosravi, Arya; et al. (2016) Gene-microbiota interactions contribute to the pathogenesis of inflammatory bowel disease; Science; Vol. 352; No. 6289; 1116-1120; PMCID PMC4996125; 10.1126/science.aad9948
• Xiao, Cheng; Cho, Jounhong Ryan; et al. (2016) Cholinergic Mesopontine Signals Govern Locomotion and Reward through Dissociable Midbrain Pathways; Neuron; Vol. 90; No. 2; 333-347; PMCID PMC4840478; 10.1016/j.neuron.2016.03.028
• Sampson, Timothy R. and Mazmanian, Sarkis K. (2015) Control of Brain Development, Function and Behavior by the Microbiome; Cell Host & Microbe; Vol. 17; No. 5; 565-576; PMCID PMC4442490; 10.1016/j.chom.2015.04.011