Caltech Center for Environmental Microbial Interactions (CEMI)

http://www.microbiology.caltech.edu/

combined from CaltechAUTHORS

• Woods, Philip H.; Speth, Daan R.; et al. (2025) Identification of key steps in the evolution of anaerobic methanotrophy in Candidatus Methanovorans (ANME-3) archaea; Science Advances; Vol. 11; No. 25; eadq5232; PMCID PMC12180501; 10.1126/sciadv.adq5232
• Griffin, Catherine; Oz, M. Tufan; et al. (2024) Engineering plant–microbe communication for plant nutrient use efficiency; Current Opinion in Biotechnology; Vol. 88; 103150; 10.1016/j.copbio.2024.103150
• Hurt, Robert C.; Jin, Zhiyang; et al. (2024) Directed Evolution of Acoustic Reporter Genes Using High-Throughput Acoustic Screening; ACS Synthetic Biology; 10.1021/acssynbio.4c00283
• Tan, Chieh-Hsiang; Wang, Ting-Yu; et al. (2024) Single-tissue proteomics in Caenorhabditis elegans reveals proteins resident in intestinal lysosome-related organelles; Proceedings of the National Academy of Sciences; Vol. 121; No. 25; 10.1073/pnas.2322588121
• Dion-Kirschner, Hannah; Nguyen, Newton H.; et al. (2024) Evaluating the contribution of methanotrophy kinetics to uncertainty in the soil methane sink; Environmental Research Letters; Vol. 19; No. 6; 64059; 10.1088/1748-9326/ad4c7a
• Griffiths, Jessica A.; Yoo, Bryan B.; et al. (2024) Peripheral neuronal activation shapes the microbiome and alters gut physiology; Cell Reports; Vol. 43; No. 4; 113953; PMCID PMC11132177; 10.1016/j.celrep.2024.113953
• Magkiriadou, Sofia; Stepp, Willi L.; et al. (2024) Polyphosphate affects cytoplasmic and chromosomal dynamics in nitrogen-starved Pseudomonas aeruginosa; Proceedings of the National Academy of Sciences; Vol. 121; No. 15; e2313004121; PMCID PMC11009631; 10.1073/pnas.2313004121
• Silverman, Shaelyn N.; Wijker, Reto S.; et al. (2024) Biosynthetic and catabolic pathways control amino acid δ²H values in aerobic heterotrophs; Frontiers in Microbiology; Vol. 15; 1338486; PMCID PMC11026604; 10.3389/fmicb.2024.1338486
• Schwartz, Hillel T.; Tan, Chieh-Hsiang; et al. (2024) Molecular identification of a peroxidase gene controlling body size in the entomopathogenic nematode Steinernema hermaphroditum; Genetics; Vol. 226; No. 2; iyad209; 10.1093/genetics/iyad209
• Osorio-Rodriguez, Daniela; Metcalfe, Kyle S.; et al. (2023) Microbially induced precipitation of silica by anaerobic methane-oxidizing consortia and implications for microbial fossil preservation; Proceedings of the National Academy of Sciences; Vol. 120; No. 51; e2302156120; PMCID PMC10743459; 10.1073/pnas.2302156120
• Ling, Bill; Ko, Jeong Hoon; et al. (2023) Gas Vesicle–Blood Interactions Enhance Ultrasound Imaging Contrast; Nano Letters; Vol. 23; No. 33; 10748-10757; PMCID PMC10722532; 10.1021/acs.nanolett.3c02780
• Jin, Zhiyang; Lakshmanan, Anupama; et al. (2023) Ultrasonic reporters of calcium for deep tissue imaging of cellular signals; PMCID PMC10659314; 10.1101/2023.11.09.566364
• Hurt, Robert C.; Buss, Marjorie T.; et al. (2023) Genomically mined acoustic reporter genes for real-time in vivo monitoring of tumors and tumor-homing bacteria; Nature Biotechnology; Vol. 41; No. 7; 919-931; PMCID PMC10344784; 10.1038/s41587-022-01581-y
• Dutka, Przemysław; Metskas, Lauren Ann; et al. (2023) Structure of Anabaena flos-aquae gas vesicles revealed by cryo-ET; Structure; Vol. 31; No. 5; 518-528; PMCID PMC10185304; 10.1016/j.str.2023.03.011
• Wang, Grace Z.; Warren, Elizabeth A.; et al. (2023) Staphylococcal secreted cytotoxins are competition sensing signals for Pseudomonas aeruginosa; 10.1101/2023.01.29.526047
• Wilkes, Elise B.; Sessions, Alex L.; et al. (2022) Position-specific carbon isotope analysis of serine by gas chromatography/Orbitrap mass spectrometry, and an application to plant metabolism; Rapid Communications in Mass Spectrometry; Vol. 36; No. 18; Art. No. e9347; 10.1002/rcm.9347
• Zeichner, Sarah S.; Wilkes, Elise B.; et al. (2022) Methods and limitations of stable isotope measurements via direct elution of chromatographic peaks using gas chromotography-Orbitrap mass spectrometry; International Journal of Mass Spectrometry; Vol. 477; Art. No. 116848; 10.1016/j.ijms.2022.116848
• Dutka, Przemysław; Metskas, Lauren Ann; et al. (2022) Structure of Anabaena flos-aquae gas vesicles revealed by cryo-ET; 10.1101/2022.06.21.496981
• Brückner, Adrian; Barnett, Austen A.; et al. (2022) Molecular evolutionary trends and biosynthesis pathways in the Oribatida revealed by the genome of Archegozetes longisetosus; Acarologia; Vol. 62; No. 2; 532-573; 10.24349/pjye-gkeo
• Douglas, Madison M.; Li, Gen K.; et al. (2022) Organic carbon burial by river meandering partially offsets bank erosion carbon fluxes in a discontinuous permafrost floodplain; Earth Surface Dynamics; Vol. 10; No. 3; 421-435; 10.5194/esurf-10-421-2022
• Greenwald, Noah F.; Miller, Geneva; et al. (2022) Whole-cell segmentation of tissue images with human-level performance using large-scale data annotation and deep learning; Nature Biotechnology; Vol. 40; No. 4; 555-565; PMCID PMC9010346; 10.1038/s41587-021-01094-0
• Yu, Hang; Chadwick, Grayson L.; et al. (2022) Comparative Genomics on Cultivated and Uncultivated Freshwater and Marine “Candidatus Manganitrophaceae” Species Implies Their Worldwide Reach in Manganese Chemolithoautotrophy; mBio; Vol. 13; No. 2; Art. No. 03421-21; PMCID PMC9040806; 10.1128/mbio.03421-21
• Needham, Brittany D.; Funabashi, Masanori; et al. (2022) A gut-derived metabolite alters brain activity and anxiety behaviour in mice; Nature; Vol. 602; No. 7899; 647-653; PMCID PMC9170029; 10.1038/s41586-022-04396-8
• Yu, Hang; Skennerton, Connor T.; et al. (2022) Sulfate differentially stimulates but is not respired by diverse anaerobic methanotrophic archaea; ISME Journal; Vol. 16; No. 1; 168-177; 10.1038/s41396-021-01047-0
• Magkiriadou, S.; Habel, A.; et al. (2021) Polyphosphate affects cytoplasmic and chromosomal dynamics in nitrogen-starved Pseudomonas aeruginosa; 10.1101/2021.12.23.473106
• Abrams, Michael J.; Tan, Fayth Hui; et al. (2021) A conserved strategy for inducing appendage regeneration in moon jellyfish, Drosophila, and mice; eLife; Vol. 10; e65092; PMCID PMC8782573; 10.7554/eLife.65092
• Mondragón-Palomino, Octavio; Poceviciute, Roberta; et al. (2021) 3D imaging for the quantification of spatial patterns in microbiota of the intestinal mucosa; 10.1101/2021.10.07.463215
• Perry, Elena K.; Siozios, Stefanos; et al. (2021) Structure of an ant-myrmecophile-microbe community; 10.1101/2021.10.04.462948
• Osorio‐Rodriguez, Daniela; Razo-Mejia, Manuel; et al. (2021) Sulfur isotope fractionations constrain the biological cycling of dimethylsulfoniopropionate in the upper ocean; Limnology and Oceanography; Vol. 66; No. 10; 3607-3618; 10.1002/lno.11901
• Douglas, Madison M.; Lingappa, Usha F.; et al. (2021) Impact of River Channel Lateral Migration on Microbial Communities across a Discontinuous Permafrost Floodplain; Applied and Environmental Microbiology; Vol. 87; No. 20; Art. No. e01339-21; PMCID PMC8478453; 10.1128/aem.01339-21
• Dutka, Przemysław; Malounda, Dina; et al. (2021) Measuring gas vesicle dimensions by electron microscopy; Protein Science; Vol. 30; No. 5; 1081-1086; PMCID PMC8040859; 10.1002/pro.4056
• Hurt, Robert C.; Buss, Marjorie T.; et al. (2021) Genomically Mined Acoustic Reporter Genes Enable In Vivo Monitoring of Tumors and Tumor-Homing Bacteria; 10.1101/2021.04.26.441537
• Yoo, Bryan B.; Griffiths, Jessica A; et al. (2021) Neuronal Activation of the Gastrointestinal Tract Shapes the Gut Environment in Mice; 10.1101/2021.04.12.439539
• Dahlstrom, Kurt M. and Newman, Dianne K. (2021) Paraburkholderia edwinii protects Aspergillus sp. from phenazines by acting as a toxin sponge; 10.1101/2021.03.28.437412
• Nicolas, William J.; Ghosal, Debnath; et al. (2021) Structure of the Bacterial Cellulose Ribbon and Its Assembly-Guiding Cytoskeleton by Electron Cryotomography; Journal of Bacteriology; Vol. 203; No. 3; Art. No. e00371-20; PMCID PMC7811197; 10.1128/JB.00371-20
• Morrison, Muir; Razo-Mejia, Manuel; et al. (2021) Reconciling kinetic and thermodynamic models of bacterial transcription; PLOS Computational Biology; Vol. 17; No. 1; Art. No. e1008572; PMCID PMC7845990; 10.1371/journal.pcbi.1008572
• Ling, Bill; Lee, Justin; et al. (2020) Biomolecular Ultrasound Imaging of Phagolysosomal Function; ACS Nano; Vol. 14; No. 9; 12210-12221; PMCID PMC7685203; 10.1021/acsnano.0c05912
• Brückner, Adrian; Kaltenpoth, Martin; et al. (2020) De novo biosynthesis of simple aromatic compounds by an arthropod (Archegozetes longisetosus); Proceedings of the Royal Society of London. Series B, Biological Sciences; Vol. 287; No. 1934; Art. No. 20201429; PMCID PMC7542773; 10.1098/rspb.2020.1429
• Saunders, Scott H.; Tse, Edmund C. M.; et al. (2020) Extracellular DNA Promotes Efficient Extracellular Electron Transfer by Pyocyanin in Pseudomonas aeruginosa Biofilms; Cell; Vol. 182; No. 4; 919-932; PMCID PMC7457544; 10.1016/j.cell.2020.07.006
• Khazaei, Tahmineh; Williams, Rory L.; et al. (2020) Metabolic multistability and hysteresis in a model aerobe-anaerobe microbiome community; Science Advances; Vol. 6; No. 33; Art. No. eaba0353; PMCID PMC7423363; 10.1126/sciadv.aba0353
• Razo-Mejia, Manuel; Marzen, Sarah; et al. (2020) First-principles prediction of the information processing capacity of a simple genetic circuit; Physical Review E; Vol. 102; No. 2; Art. No. 022404; 10.1103/PhysRevE.102.022404
• Yu, Hang and Leadbetter, Jared R. (2020) Bacterial chemolithoautotrophy via manganese oxidation; Nature; Vol. 583; No. 7816; 453-458; PMCID PMC7802741; 10.1038/s41586-020-2468-5
• Hirokawa, Soichi; Chure, Griffin; et al. (2020) Sequence-Dependent Dynamics of Synthetic and Endogenous RSSs in V(D)J Recombination; Nucleic Acids Research; Vol. 48; No. 12; 6726-6739; PMCID PMC7337519; 10.1093/nar/gkaa418
• Silva, Rebekah M. B.; Grodick, Michael A.; et al. (2020) UvrC Coordinates an O₂-Sensitive [4Fe4S] Cofactor; Journal of the American Chemical Society; Vol. 142; No. 25; 10964-10977; PMCID PMC7392197; 10.1021/jacs.0c01671
• Donaldson, Gregory P.; Chou, Wen-Chi; et al. (2020) Spatially distinct physiology of Bacteroides fragilis within the proximal colon of gnotobiotic mice; Nature Microbiology; Vol. 5; No. 5; 746-756; 10.1038/s41564-020-0683-3
• Ward, Lewis M.; Lingappa, Usha F.; et al. (2020) Microbial mats in the Turks and Caicos Islands reveal diversity and evolution of phototrophy in the Chloroflexota order Aggregatilineales; Environmental Microbiome; Vol. 15; Art. No. 9; PMCID PMC8067394; 10.1186/s40793-020-00357-8
• Torres, Mark A.; Kemeny, Preston C.; et al. (2020) Long-term storage and age‐biased export of fluvial organic carbon: field evidence from West Iceland; Geochemistry, Geophysics, Geosystems; Vol. 21; No. 4; Art. No. e2019GC008632; 10.1029/2019gc008632
• Davis, Hunter C.; Kang, Sunghwi; et al. (2020) Nanoscale Heat Transfer from Magnetic Nanoparticles and Ferritin in an Alternating Magnetic Field; Biophysical Journal; Vol. 118; No. 6; 1502-1510; PMCID PMC7091488; 10.1016/j.bpj.2020.01.028
• Challis, Collin; Hori, Acacia; et al. (2020) Gut-seeded α-synuclein fibrils promote gut dysfunction and brain pathology specifically in aged mice; Nature Neuroscience; Vol. 23; No. 3; 327-336; PMCID PMC7065967; 10.1038/s41593-020-0589-7
• Khazaei, Tahmineh; Williams, Rory L.; et al. (2020) Metabolic multi-stability and hysteresis in a model aerobe-anaerobe microbiome community; 10.1101/2020.02.28.968941
• Moen, Erick; Borba, Enrico; et al. (2019) Accurate cell tracking and lineage construction in live-cell imaging experiments with deep learning; 10.1101/803205
• Porter, Michael K.; Steinberg, Asher Preska; et al. (2019) Interplay of motility and polymer-driven depletion forces in the initial stages of bacterial aggregation; Soft Matter; Vol. 15; No. 35; 7071-7079; 10.1039/c9sm00791a
• Hanewich-Hollatz, Mikhail H.; Chen, Zhewei; et al. (2019) Conditional Guide RNAs: Programmable Conditional Regulation of CRISPR/Cas Function in Bacterial and Mammalian Cells via Dynamic RNA Nanotechnology; ACS Central Science; Vol. 5; No. 7; 1241-1249; PMCID PMC6661866; 10.1021/acscentsci.9b00340
• Preska Steinberg, Asher; Wang, Zhen-Gang; et al. (2019) Food Polyelectrolytes Compress the Colonic Mucus Hydrogel by a Donnan Mechanism; Biomacromolecules; Vol. 20; No. 7; 2675-2683; 10.1021/acs.biomac.9b00442
• Chalkley, Matthew J.; Oyala, Paul H.; et al. (2019) Cp* Noninnocence Leads to a Remarkably Weak C–H Bond via Metallocene Protonation; Journal of the American Chemical Society; Vol. 141; No. 11; 4721-4729; 10.1021/jacs.9b00193
• Ward, Lewis M.; Shih, Patrick M.; et al. (2019) Phototrophic Methane Oxidation in a Member of the Chloroflexi Phylum; 10.1101/531582
• Ward, Lewis M.; Shih, Patrick M.; et al. (2019) Genomic Evidence for Phototrophic Oxidation of Small Alkanes in a Member of the Chloroflexi Phylum; 10.1101/531582
• Neubauer, Cajetan; Sessions, Alex L.; et al. (2018) Towards measuring growth rates of pathogens during infections by D_2O-labeling lipidomics; Rapid Communications in Mass Spectrometry; Vol. 32; No. 24; 2129-2140; 10.1002/rcm.8288
• Schretter, Catherine E.; Vielmetter, Jost; et al. (2018) A gut microbial factor modulates locomotor behavior in Drosophila; Nature; Vol. 563; No. 7731; 402-406; PMCID PMC6237646; 10.1038/s41586-018-0634-9
• Michel, Alice J.; Ward, Lewis M.; et al. (2018) The gut of the finch: uniqueness of the gut microbiome of the Galápagos vampire finch; Microbiome; Vol. 6; Art. No. 167; PMCID PMC6146768; 10.1186/s40168-018-0555-8
• Lu, George J.; Farhadi, Arash; et al. (2018) Proteins, air and water: reporter genes for ultrasound and magnetic resonance imaging; Current Opinion in Chemical Biology; Vol. 45; 57-63; PMCID PMC6076850; 10.1016/j.cbpa.2018.02.011
• Lewis, Russell D.; Garcia-Borràs, Marc; et al. (2018) Catalytic iron-carbene intermediate revealed in a cytochrome c carbene transferase; Proceedings of the National Academy of Sciences of the United States of America; Vol. 115; No. 28; 7308-7313; PMCID PMC6048479; 10.1073/pnas.1807027115
• Maresca, David; Lakshmanan, Anupama; et al. (2018) Biomolecular Ultrasound and Sonogenetics; Annual Review of Chemical and Biomolecular Engineering; Vol. 9; 229-252; PMCID PMC6086606; 10.1146/annurev-chembioeng-060817-084034
• Rosenthal, Adam Z.; Qi, Yutao; et al. (2018) Metabolic interactions between dynamic bacterial subpopulations; eLife; Vol. 7; Art. No. e33099; PMCID PMC6025961; 10.7554/eLife.33099
• Chalkley, Matthew J.; Del Castillo, Trevor J.; et al. (2018) Fe-Mediated Nitrogen Fixation with a Metallocene Mediator: Exploring pK_a Effects and Demonstrating Electrocatalysis; Journal of the American Chemical Society; Vol. 140; No. 19; 6122-6129; PMCID PMC6071328; 10.1021/jacs.8b02335
• Arnett, Charles H.; Chalkley, Matthew J.; et al. (2018) A Thermodynamic Model for Redox-Dependent Binding of Carbon Monoxide at Site-Differentiated, High Spin Iron Clusters; Journal of the American Chemical Society; Vol. 140; No. 16; 5569-5578; PMCID PMC6452638; 10.1021/jacs.8b01825
• Brandenberg, Oliver F.; Prier, Christopher K.; et al. (2018) Stereoselective Enzymatic Synthesis of Heteroatom-Substituted Cyclopropanes; ACS Catalysis; Vol. 8; No. 4; 2629-2634; 10.1021/acscatal.7b04423
• Subramanian, Poorna; Pirbadian, Sahand; et al. (2018) Ultrastructure of Shewanella oneidensis MR-1 nanowires revealed by electron cryotomography; Proceedings of the National Academy of Sciences of the United States of America; Vol. 115; No. 14; E3246-E3255; PMCID PMC5889646; 10.1073/pnas.1718810115
• Knight, Anders M.; Kan, S. B. Jennifer; et al. (2018) Diverse engineered heme proteins enable stereodivergent cyclopropanation of unactivated alkenes; ACS Central Science; Vol. 4; No. 3; 372-377; PMCID PMC5879470; 10.1021/acscentsci.7b00548
• Ward, Lewis M.; Hemp, James; et al. (2018) Evolution of Phototrophy in the Chloroflexi Phylum Driven by Horizontal Gene Transfer; Frontiers in Microbiology; Vol. 9; Art. No. 260; PMCID PMC5826079; 10.3389/fmicb.2018.00260
• Davis, Hunter C.; Ramesh, Pradeep; et al. (2018) Mapping the microscale origins of magnetic resonance image contrast with subcellular diamond magnetometry; Nature Communications; Vol. 9; Art. No. 131; PMCID PMC5760582; 10.1038/s41467-017-02471-7
• Niesen, Michiel J. M.; Marshall, Stephen S.; et al. (2017) Improving membrane protein expression by optimizing integration efficiency; Journal of Biological Chemistry; Vol. 292; No. 47; 19537-19545; PMCID PMC5702688; 10.1074/jbc.M117.813469
• Piraner, Dan I.; Farhadi, Arash; et al. (2017) Going Deeper: Biomolecular Tools for Acoustic and Magnetic Imaging and Control of Cellular Function; Biochemistry; Vol. 56; No. 39; 5202-5209; PMCID PMC6058970; 10.1021/acs.biochem.7b00443
• Oikonomou, Catherine M. and Jensen, Grant J. (2017) Cellular Electron Cryotomography: Toward Structural Biology In Situ; Annual Review of Biochemistry; Vol. 86; 873-896; 10.1146/annurev-biochem-061516-044741
• Bedbrook, Claire N.; Rice, Austin J.; et al. (2017) Structure-guided SCHEMA recombination generates diverse chimeric channelrhodopsins; Proceedings of the National Academy of Sciences of the United States of America; Vol. 114; No. 13; E2624-E2633; PMCID PMC5380088; 10.1073/pnas.1700269114
• Herwig, Lukas; Rice, Austin J.; et al. (2017) Directed Evolution of a Bright Near-Infrared Fluorescent Rhodopsin Using a Synthetic Chromophore; Cell Chemical Biology; Vol. 24; No. 3; 415-425; PMCID PMC5357175; 10.1016/j.chembiol.2017.02.008
• Rittle, Jonathan and Peters, Jonas C. (2017) N-H Bond Dissociation Enthalpies and Facile H-atom Transfers for Early Intermediates of Fe-N₂ and Fe-CN Reductions; Journal of the American Chemical Society; Vol. 139; No. 8; 3161-3170; PMCID PMC5517100; 10.1021/jacs.6b12861
• Glenn, Weslee S.; Stone, Shannon E.; et al. (2017) BONCAT enables time-resolved analysis of protein synthesis in native plant tissue; Plant Physiology; Vol. 173; No. 3; 1543-1553; 10.1104/pp.16.01762
• Stone, Shannon E.; Glenn, Weslee S.; et al. (2017) Cell-selective proteomics for biological discovery; Current Opinion in Chemical Biology; Vol. 36; 50-57; PMCID PMC5337159; 10.1016/j.cbpa.2016.12.026
• Maker, Allison; Hemp, James; et al. (2017) Draft Genome Sequence of Hydrogenibacillus schlegelii MA48, a Deep-Branching Member of the Bacilli Class of Firmicutes; Genome Announcements; Vol. 5; No. 3; Art. No. e00380-16; PMCID PMC5255923; 10.1128/genomeA.00380-16
• Shih, P. M.; Hemp, J.; et al. (2017) Crown group Oxyphotobacteria postdate the rise of oxygen; Geobiology; Vol. 15; No. 1; 19-29; 10.1111/gbi.12200
• Ho, Samuel H. and Tirrell, David A. (2016) Chemoenzymatic Labeling of Proteins for Imaging in Bacterial Cells; Journal of the American Chemical Society; Vol. 138; No. 46; 15098-15101; 10.1021/jacs.6b07067
• Hemp, James; Lücker, Sebastian; et al. (2016) Genomics of a phototrophic nitrite oxidizer: insights into the evolution of photosynthesis and nitrification; ISME Journal; Vol. 10; No. 11; 2669-2678; PMCID PMC5113846; 10.1038/ismej.2016.56
• Skennerton, Connor T.; Haroon, Mohamed F.; et al. (2016) Phylogenomic analysis of Candidatus ‘Izimaplasma’ species: free-living representatives from a Tenericutes clade found in methane seeps; ISME Journal; Vol. 10; No. 11; 2679-2692; PMCID PMC5113845; 10.1038/ismej.2016.55
• DePas, William H.; Starwalt-Lee, Ruth; et al. (2016) Exposing the Three-Dimensional Biogeography and Metabolic States of Pathogens in Cystic Fibrosis Sputum via Hydrogel Embedding, Clearing, and rRNA Labeling; mBio; Vol. 7; No. 5; e00796-16; PMCID PMC5040109; 10.1128/mBio.00796-16
• Marshall, Stephen S.; Niesen, Michiel J. M.; et al. (2016) A Link between Integral Membrane Protein Expression and Simulated Integration Efficiency; Cell Reports; Vol. 16; No. 8; 2169-2177; PMCID PMC5001948; 10.1016/j.celrep.2016.07.042
• Fischer, Woodward W.; Hemp, James; et al. (2016) Evolution of Oxygenic Photosynthesis; Annual Review of Earth and Planetary Sciences; Vol. 44; 647-683; 10.1146/annurev-earth-060313-054810
• Xiao, Cheng; Cho, Jounhong Ryan; et al. (2016) Cholinergic Mesopontine Signals Govern Locomotion and Reward through Dissociable Midbrain Pathways; Neuron; Vol. 90; No. 2; 333-347; PMCID PMC4840478; 10.1016/j.neuron.2016.03.028
• Oikonomou, Catherine M. and Jensen, Grant J. (2016) A new view into prokaryotic cell biology from electron cryotomography; Nature Reviews Microbiology; Vol. 14; No. 4; 205-220; PMCID PMC5551487; 10.1038/nrmicro.2016.7
• Rittle, Jonathan and Peters, Jonas C. (2016) An Fe-N₂ Complex That Generates Hydrazine and Ammonia via Fe═NNH₂: Demonstrating a Hybrid Distal-to-Alternating Pathway for N₂ Reduction; Journal of the American Chemical Society; Vol. 138; No. 12; 4243-4248; PMCID PMC5065353; 10.1021/jacs.6b01230
• Ward, Lewis M.; Kirschvink, Joseph L.; et al. (2016) Timescales of Oxygenation Following the Evolution of Oxygenic Photosynthesis; Origins of life and evolution of the biosphere; Vol. 46; No. 1; 51-65; 10.1007/s11084-015-9460-3
• Spatzal, Thomas; Perez, Kathryn A.; et al. (2015) Catalysis-dependent selenium incorporation and migration in the nitrogenase active site iron-molybdenum cofactor; eLife; Vol. 4; Art. No. e11620; PMCID PMC4755756; 10.7554/eLife.11620
• Hemp, James; Ward, Lewis M.; et al. (2015) Draft Genome Sequence of Ardenticatena maritime 110S, a Thermophilic Nitrate- and Iron-Reducing Member of the Chloroflexi Class Ardenticatenia; Genome Announcements; Vol. 3; No. 6; Art. No. e01347-15; PMCID PMC4653789; 10.1128/genomeA.01347-15
• Ward, Lewis M.; Hemp, James; et al. (2015) Draft Genome Sequence of Herpetosiphon geysericola GC-42, a Nonphototrophic Member of the Chloroflexi Class Chloroflexia; Genome Announcements; Vol. 3; No. 6; Art. No. e01352-15; PMCID PMC4653791; 10.1128/genomeA.01352-15
• Ward, Lewis M.; Hemp, James; et al. (2015) Draft Genome Sequence of Leptolinea tardivitalis YMTK-2, a Mesophilic Anaerobe from the Chloroflexi Class Anaerolineae; Genome Announcements; Vol. 3; No. 6; Art. No. e01356-15; PMCID PMC4653795; 10.1128/genomeA.01356-15
• Hemp, James; Ward, Lewis M.; et al. (2015) Draft Genome Sequence of Levilinea saccharolytica KIBI-1, a Member of the Chloroflexi Class Anaerolineae; Genome Announcements; Vol. 3; No. 6; Art. No. e01357-15; PMCID PMC4653796; 10.1128/genomeA.01357-15
• Hemp, James; Ward, Lewis M.; et al. (2015) Draft Genome Sequence of Ornatilinea apprima P3M-1, an Anaerobic Member of the Chloroflexi Class Anaerolineae; Genome Announcements; Vol. 3; No. 6; Art. No. e01353-15; PMCID PMC4653791; 10.1128/genomeA.01353-15
• Pace, Laura A.; Hemp, James; et al. (2015) Draft Genome of Thermanaerothrix daxensis GNS-1, a Thermophilic Facultative Anaerobe from the Chloroflexi Class Anaerolineae; Genome Announcements; Vol. 3; No. 6; Art. No. e01354-15; PMCID PMC4653792; 10.1128/genomeA.01354-15
• Fischer, Woodward W.; Hemp, James; et al. (2015) Manganese and the Evolution of Photosynthesis; Origins of Life and Evolution of Biospheres; Vol. 45; No. 3; 351-357; 10.1007/s11084-015-9442-5
• Rasmussen, Tim; Rasmussen, Akiko; et al. (2015) Properties of the Mechanosensitive Channel MscS Pore Revealed by Tryptophan Scanning Mutagenesis; Biochemistry; Vol. 54; No. 29; 4519-4530; PMCID PMC4519979; 10.1021/acs.biochem.5b00294
• Anderson, John S.; Cutsail, George E., III; et al. (2015) Characterization of an Fe≡N−NH₂ Intermediate Relevant to Catalytic N₂ Reduction to NH₃; Journal of the American Chemical Society; Vol. 137; No. 24; 7803-7809; PMCID PMC4603982; 10.1021/jacs.5b03432
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