[
    {
        "title": "Blastomere size in the human 2-cell embryo predicts the division order that leads to imbalanced lineage contribution to the future body",
        "type": "publication_datapaper",
        "publication_date": "2024-05-20",
        "publisher": "Caltech Library",
        "doi": "10.17912/micropub.biology.001181",
        "issn": "2578-9430",
        "pmcid": "PMC11151110",
        "cite_using_url": "https://authors.library.caltech.edu/records/wnbj3-fjf76",
        "publication": "microPublication Biology",
        "volume": "2024",
        "pages": "10.17912/micropub.biology.001181",
        "abstract": "<div class=\"css-acwcvw\">\n<div class=\"textBlock-module--textBlock--1lcFr css-qo4yr8\">\n<p>Retrospective tracing of somatic mutations predicted that most cells in the human body could be traced back to a single cell of the 2-cell stage embryo. Accordingly, a recent prospective study of the developmental trajectory of blastomeres in human embryos confirmed that progeny of the first 2-cell stage blastomere to divide generates more epiblast cells (future body). How the 2-cell blastomeres differ is unknown. Here, we show that 2-cell stage blastomeres in human embryos are asymmetric; they differ in size and the bigger blastomere divides first to 4-cell stage. We propose that this asymmetry might originate differences in cell fate.</p>\n</div>\n</div>",
        "author_list": "Zernicki-Glover, Simon and Stanislawska, Nicola, el al."
    },
    {
        "title": "Drosophila Smad2 degradation occurs independently of linker phosphorylations",
        "type": "publication_datapaper",
        "publication_date": "2024-03-26",
        "publisher": "Caltech Library",
        "doi": "10.17912/micropub.biology.001153",
        "issn": "2578-9430",
        "pmcid": "PMC11004797",
        "cite_using_url": "https://authors.library.caltech.edu/records/zfdnt-nbx75",
        "publication": "microPublication Biology",
        "volume": "2024",
        "pages": "10.17912/micropub.biology.001153",
        "abstract": "<div class=\"abstract\">\n<div class=\"abstract-content selected\">\n<p>TGF-&beta; signals are important for proliferation, differentiation, and cell fate determination during embryonic development and tissue homeostasis in adults.&nbsp;<em>Drosophila</em> Activin/TGF-&beta; signals are transduced intracellularly when its transcription factor dSmad2 (also called Smad on X or Smox) is C-terminally phosphorylated by pathway receptors. Recently, it has been shown that receptor-activated dSmad2 undergoes bulk degradation, however, the mechanism of how this occurs is unknown. Here we investigated if two putative linker phosphorylation sites are involved in dSmad2 degradation. We demonstrate that degradation of activated-dSmad2 occurs independently of threonine phosphorylation at linker sites 252 and 277. We also show that dSmad2 degradation is not carried out by cellular proteasomes.</p>\n</div>\n</div>",
        "author_list": "Castro, Kenny and Muradyan, Volodia, el al."
    },
    {
        "title": "An improved solid medium-based culturing method for Steinernema hermaphroditum",
        "type": "publication_datapaper",
        "publication_date": "2024-01-27",
        "publisher": "Caltech Library",
        "doi": "10.17912/micropub.biology.001110",
        "issn": "2578-9430",
        "pmcid": "PMC10858997",
        "cite_using_url": "https://authors.library.caltech.edu/records/fxd5s-yzs73",
        "publication": "microPublication Biology",
        "pages": "10.17912/micropub.biology.001110",
        "abstract": "<div class=\"tsec sec\">\n<div>\n<p class=\"p p-first-last\"><em>Steinernema hermaphroditum</em>&nbsp;is the only identified entomopathogenic nematode that is consistently hermaphroditic and thus offers a great opportunity to use genetic approaches to probe symbiosis. Evolutionarily, ecologically, and morphologically distinct from laboratory nematodes commonly used in the laboratory, with both forward and reverse genetics tools available, this species also provides an opportunity to explore other areas of biology, especially using comparative studies. Here, we describe an improved solid medium-based culturing method for&nbsp;<em>S. hermaphroditum</em>&nbsp;that we found particularly helpful for phenotypic analysis and genetic manipulation. We document the rapid increase in the size of the worm; and show that the uniform growth of the worm on this medium provides a good basis for developmental studies. Finally, we measure the brood size of individual animals, which, although far larger, has a very similar trajectory to that of the hermaphroditic&nbsp;<em>Caenorhabditis elegans,</em> suggesting common reproductive restraints.</p>\n</div>\n</div>\n<div class=\"tsec sec\"></div>",
        "author_list": "Rodak, Nathan Y. and Tan, Chieh-Hsiang, el al."
    },
    {
        "title": "Conjugation and transposon mutagenesis of Xenorhabdus griffiniae HGB2511, the bacterial symbiont of the nematode Steinernema hermaphroditum (India)",
        "type": "publication_datapaper",
        "publication_date": "2023-04-05",
        "publisher": "Caltech Library",
        "doi": "10.17912/micropub.biology.000772",
        "pmcid": "PMC10170317",
        "cite_using_url": "https://authors.library.caltech.edu/records/d82b3-pd428",
        "publication": "microPublication Biology",
        "volume": "2023",
        "pages": "10.17912/micropub.biology.000772",
        "abstract": "<p>Symbiosis, the beneficial interactions between two organisms, is a ubiquitous feature of all life on Earth, including associations between animals and bacteria. However, the specific molecular and cellular mechanisms which underlie the diverse partnerships formed between animals and bacteria are still being explored. Entomopathogenic nematodes transport bacteria between insect hosts, together they kill the insect, and the bacteria consume the insect and serve as food source for the nematodes. These nematodes, including those in the <i>Steinernema</i> genus, are effective laboratory models for studying the molecular mechanisms of symbiosis because of the natural partnership they form with <i>Xenorhabdus </i>bacteria and their straightforward husbandry. <i>Steinernema hermaphroditum </i>nematodes<i> </i>and their <i>Xenorhabdus griffiniae </i>symbiotic bacteria<i> </i>are being developed as a genetic model pair for studying symbiosis. Our goal in this project was to begin to identify bacterial genes that may be important for symbiotic interactions with the nematode host. Towards this end, we adapted and optimized a protocol for delivery and insertion of a <i>lacZ-</i>promoter-probe transposon for use in the <i>S. hermaphroditum </i>symbiont, <i>X. griffiniae</i> HGB2511 (Cao et al., 2022). We assessed the frequencies at which we obtained exconjugants, metabolic auxotrophic mutants, and active promoter-<i>lacZ</i> fusions. Our data indicate that the Tn<i>10 </i>transposon inserted relatively randomly based on the finding that 4.7% of the mutants exhibited an auxotrophic phenotype. Promoter-fusions with the transposon-encoded <i>lacZ</i>, which resulted in expression of \u03b2-galactosidase activity, occurred in 47% of the strains. To our knowledge, this is the first mutagenesis protocol generated for this bacterial species, and will facilitate the implementation of large scale screens for symbiosis and other phenotypes of interest in <i>X. griffiniae</i>.</p>",
        "author_list": "Alani, Omar S. and Cao, Mengyi, el al."
    }
]