<h1>Yue, Yisong</h1> <h2>Combined from <a href="https://authors.library.caltech.edu">CaltechAUTHORS</a></h2> <ul> <li>Laubscher, Emily and Wang, Xuefei (Julie), el al. (2024) <a href="https://authors.library.caltech.edu/records/6xhb5-f2797">Accurate single-molecule spot detection for image-based spatial transcriptomics with weakly supervised deep learning</a>; Cell Systems; Vol. 15; No. 5; 475-482.e6; <a href="https://doi.org/10.1016/j.cels.2024.04.006">10.1016/j.cels.2024.04.006</a></li> <li>Israel, Uriah and Marks, Markus, el al. (2024) <a href="https://authors.library.caltech.edu/records/47sqx-33w78">A Foundation Model for Cell Segmentation</a>; bioRvix; 2023.11.17.567630; PMCID PMC10690226; <a href="https://doi.org/10.1101/2023.11.17.567630">10.1101/2023.11.17.567630</a></li> <li>Yang, Jason and Ducharme, Julie, el al. (2024) <a href="https://authors.library.caltech.edu/records/d7df6-3n859">Correction to "DeCOIL: Optimization of Degenerate Codon Libraries for Machine Learning-Assisted Protein Engineering"</a>; ACS Synthetic Biology; Vol. 13; No. 2; 692; <a href="https://doi.org/10.1021/acssynbio.3c00751">10.1021/acssynbio.3c00751</a></li> <li>Talukder, Sabera and Yue, Yisong, el al. (2024) <a href="https://authors.library.caltech.edu/records/stvvz-was45">TOTEM: TOkenized Time Series EMbeddings for General Time Series Analysis</a>; <a href="https://doi.org/10.48550/arxiv.2402.16412">10.48550/arxiv.2402.16412</a></li> <li>Dorobantu, Victor D. and Azizzadenesheli, Kamyar, el al. (2023) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20230705-704041500.16">Compactly Restrictable Metric Policy Optimization Problems</a>; IEEE Transactions on Automatic Control; Vol. 68; No. 5; 3115-3122; <a href="https://doi.org/10.1109/tac.2022.3217269">10.1109/tac.2022.3217269</a></li> <li>Voloshin, Cameron and Verma, Abhinav, el al. (2023) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20230316-204049328">Eventual Discounting Temporal Logic Counterfactual Experience Replay</a></li> <li>Sun, Jennifer J. and Karashchuk, Pierre, el al. (2022) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20221219-204745839">BKinD-3D: Self-Supervised 3D Keypoint Discovery from Multi-View Videos</a>; <a href="https://doi.org/10.48550/arXiv.2212.07401">10.48550/arXiv.2212.07401</a></li> <li>Huang, Yujia and Jimenez Rodriguez, Ivan Dario, el al. (2022) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20221219-234122405">FI-ODE: Certified and Robust Forward Invariance in Neural ODEs</a>; <a href="https://doi.org/10.48550/arXiv.2210.16940">10.48550/arXiv.2210.16940</a></li> <li>Sun, Jennifer J. and Tjandrasuwita, Megan, el al. (2022) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20221219-234119032">Neurosymbolic Programming for Science</a>; <a href="https://doi.org/10.48550/arXiv.2210.05050">10.48550/arXiv.2210.05050</a></li> <li>Tucker, Maegan and Li, Kejun, el al. (2022) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20221219-234115665">POLAR: Preference Optimization and Learning Algorithms for Robotics</a>; <a href="https://doi.org/10.48550/arXiv.2208.04404">10.48550/arXiv.2208.04404</a></li> <li>Sun, Jennifer J. and Ulmer, Andrew, el al. (2022) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20221219-234042044">The MABe22 Benchmarks for Representation Learning of Multi-Agent Behavior</a>; <a href="https://doi.org/10.48550/arXiv.2207.10553">10.48550/arXiv.2207.10553</a></li> <li>Dorobantu, Victor D. and Azizzadenesheli, Kamyar, el al. (2022) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20220714-212414777">Compactly Restrictable Metric Policy Optimization Problems</a>; <a href="https://doi.org/10.48550/arXiv.arXiv.2207.05850">10.48550/arXiv.arXiv.2207.05850</a></li> <li>Voloshin, Cameron and Le, Hoang M., el al. (2022) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20220714-212419626">Policy Optimization with Linear Temporal Logic Constraints</a>; <a href="https://doi.org/10.48550/arXiv.arXiv.2206.09546">10.48550/arXiv.arXiv.2206.09546</a></li> <li>Talukder, Sabera and Sun, Jennifer J., el al. (2022) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20220714-212423144">Deep Neural Imputation: A Framework for Recovering Incomplete Brain Recordings</a>; <a href="https://doi.org/10.48550/arXiv.arXiv.2206.08094">10.48550/arXiv.arXiv.2206.08094</a></li> <li>Farhang, Alexander R. and Bernstein, Jeremy D., el al. (2022) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20220714-212426792">Investigating Generalization by Controlling Normalized Margin</a>; Proceedings of Machine Learning Research; Vol. 162; 6324-6336; <a href="https://doi.org/10.48550/arXiv.arXiv.2205.03940">10.48550/arXiv.arXiv.2205.03940</a></li> <li>O'Connell, Michael and Shi, Guanya, el al. (2022) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20220505-792409800">Neural-Fly enables rapid learning for agile flight in strong winds</a>; Science Robotics; Vol. 7; No. 66; Art. No. eabm6597; <a href="https://doi.org/10.1126/scirobotics.abm6597">10.1126/scirobotics.abm6597</a></li> <li>Jimenez Rodriguez, Ivan Dario and Csomay-Shanklin, Noel, el al. (2022) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20220714-194300374">Neural Gaits: Learning Bipedal Locomotion via Control Barrier Functions and Zero Dynamics Policies</a>; Proceedings of Machine Learning Research; Vol. 168; 1060-1072; <a href="https://doi.org/10.48550/arXiv.2204.08120">10.48550/arXiv.2204.08120</a></li> <li>Daftry, Shreyansh and Abcouwer, Neil, el al. (2022) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20220317-376217000">MLNav: Learning to Safely Navigate on Martian Terrains</a>; IEEE Robotics and Automation Letters; Vol. 7; No. 2; 5461-5468; <a href="https://doi.org/10.1109/lra.2022.3156654">10.1109/lra.2022.3156654</a></li> <li>Shi, Guanya and Hönig, Wolfgang, el al. (2022) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20210120-165259145">Neural-Swarm2: Planning and Control of Heterogeneous Multirotor Swarms Using Learned Interactions</a>; IEEE Transactions on Robotics; Vol. 38; No. 2; 1063-1079; <a href="https://doi.org/10.1109/TRO.2021.3098436">10.1109/TRO.2021.3098436</a></li> <li>Li, Kejun and Tucker, Maegan, el al. (2022) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20220210-721740000">Natural Multicontact Walking for Robotic Assistive Devices via Musculoskeletal Models and Hybrid Zero Dynamics</a>; IEEE Robotics and Automation Letters; Vol. 7; No. 2; 4283-4290; <a href="https://doi.org/10.1109/lra.2022.3149568">10.1109/lra.2022.3149568</a></li> <li>Taylor, Andrew J. and Dorobantu, Victor D., el al. (2022) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20220325-224027516">Safety of Sampled-Data Systems with Control Barrier Functions via Approximate Discrete Time Models</a>; <a href="https://doi.org/10.48550/arXiv.2203.11470">10.48550/arXiv.2203.11470</a></li> <li>Cosner, Ryan K. and Jimenez Rodriguez, Ivan D., el al. (2022) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20220325-220806703">Self-Supervised Online Learning for Safety-Critical Control using Stereo Vision</a>; <a href="https://doi.org/10.48550/arXiv.2203.01404">10.48550/arXiv.2203.01404</a></li> <li>Jimenez Rodriguez, Ivan Dario and Ames, Aaron D., el al. (2022) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20220714-224552040">LyaNet: A Lyapunov Framework for Training Neural ODEs</a>; Proceedings of Machine Learning Research; 18687-18703; <a href="https://doi.org/10.48550/arXiv.arXiv.2202.02526">10.48550/arXiv.arXiv.2202.02526</a></li> <li>Jimenez Rodriguez, Ivan Dario and Ames, Aaron D., el al. (2022) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20220224-200943137">LyaNet: A Lyapunov Framework for Training Neural ODEs</a>; <a href="https://doi.org/10.48550/arXiv.2202.02526">10.48550/arXiv.2202.02526</a></li> <li>Taylor, Andrew J. and Dorobantu, Victor D., el al. (2022) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20210510-100142166">Sampled-Data Stabilization with Control Lyapunov Functions via Quadratically Constrained Quadratic Programs</a>; IEEE Control Systems Letters; Vol. 6; 680-685; <a href="https://doi.org/10.1109/LCSYS.2021.3085172">10.1109/LCSYS.2021.3085172</a></li> <li>Cosner, Ryan K. and Tucker, Maegan, el al. (2021) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20220224-200843937">Safety-Aware Preference-Based Learning for Safety-Critical Control</a>; <a href="https://doi.org/10.48550/arXiv.2112.08516">10.48550/arXiv.2112.08516</a></li> <li>Taylor, Andrew J. and Dorobantu, Victor D., el al. (2021) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20210120-165235061">Towards Robust Data-Driven Control Synthesis for Nonlinear Systems with Actuation Uncertainty</a>; ISBN 978-1-6654-3659-5; 2021 60th IEEE Conference on Decision and Control (CDC); 6469-6476; <a href="https://doi.org/10.1109/CDC45484.2021.9683511">10.1109/CDC45484.2021.9683511</a></li> <li>Sun, Jennifer J. and Ryou, Serim, el al. (2021) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20220224-200833645">Self-Supervised Keypoint Discovery in Behavioral Videos</a>; <a href="https://doi.org/10.48550/arXiv.2112.05121">10.48550/arXiv.2112.05121</a></li> <li>Shi, Guanya and Azizzadenesheli, Kamyar, el al. (2021) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20220224-200754768">Meta-Adaptive Nonlinear Control: Theory and Algorithms</a>; <a href="https://doi.org/10.48550/arXiv.2106.06098">10.48550/arXiv.2106.06098</a></li> <li>Gao, Angela F. and Castellanos, Jorge C., el al. (2021) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20221026-200931912">DeepGEM: Generalized Expectation-Maximization for Blind Inversion</a>; ISBN 9781713845393; 35th Conference on Neural Information Processing Systems; 1-12</li> <li>Tseng, Albert and Sun, Jennifer J., el al. (2021) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20220224-200830238">Automatic Synthesis of Diverse Weak Supervision Sources for Behavior Analysis</a>; <a href="https://doi.org/10.48550/arXiv.2111.15186">10.48550/arXiv.2111.15186</a></li> <li>Wittmann, Bruce J. and Yue, Yisong, el al. (2021) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20201207-131007947">Informed training set design enables efficient machine learning-assisted directed protein evolution</a>; Cell Systems; Vol. 12; No. 11; 1026-1045; <a href="https://doi.org/10.1016/j.cels.2021.07.008">10.1016/j.cels.2021.07.008</a></li> <li>Bernstein, Jeremy and Farhang, Alex, el al. (2021) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20220224-200822492">Kernel Interpolation as a Bayes Point Machine</a>; <a href="https://doi.org/10.48550/arXiv.2110.04274">10.48550/arXiv.2110.04274</a></li> <li>Jimenez Rodriguez, Ivan D. and Rosolia, Ugo, el al. (2021) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20210510-095024771">Learning to Control an Unstable System with One Minute of Data: Leveraging Gaussian Process Differentiation in Predictive Control</a>; ISBN 978-1-6654-1714-3; 2021 IEEE/RSJ International Conference on Intelligent Robots and Systems (IROS); 3896-3903; <a href="https://doi.org/10.1109/IROS51168.2021.9636786">10.1109/IROS51168.2021.9636786</a></li> <li>Bagherian, Dawna and Gornet, James, el al. (2021) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20210920-171551019">Fine-Grained System Identification of Nonlinear Neural Circuits</a>; ISBN 978-1-4503-8332-5; Proceedings of the 27th ACM SIGKDD Conference on Knowledge Discovery & Data Mining; 14-24; <a href="https://doi.org/10.1145/3447548.3467402">10.1145/3447548.3467402</a></li> <li>Zhan, Eric and Sun, Jennifer J., el al. (2021) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20220224-200805115">Unsupervised Learning of Neurosymbolic Encoders</a>; <a href="https://doi.org/10.48550/arXiv.2107.13132">10.48550/arXiv.2107.13132</a></li> <li>Liu, Yang and Bernstein, Jeremy, el al. (2021) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20210225-132711583">Learning by Turning: Neural Architecture Aware Optimisation</a>; Proceedings of Machine Learning Research; Vol. 139; 6748-6758; <a href="https://doi.org/10.48550/arXiv.2102.07227">10.48550/arXiv.2102.07227</a></li> <li>Taylor, Andrew J. and Singletary, Andrew, el al. (2021) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20200707-104322686">A Control Barrier Perspective on Episodic Learning via Projection-to-State Safety</a>; IEEE Control Systems Letters; Vol. 5; No. 3; 1019-1024; <a href="https://doi.org/10.1109/LCSYS.2020.3009082">10.1109/LCSYS.2020.3009082</a></li> <li>Tjandrasuwita, Megan and Sun, Jennifer J., el al. (2021) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20220224-200758198">Interpreting Expert Annotation Differences in Animal Behavior</a>; <a href="https://doi.org/10.48550/arXiv.2106.06114">10.48550/arXiv.2106.06114</a></li> <li>Ferber, Aaron and Song, Jialin, el al. (2021) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20210719-210128990">Learning Pseudo-Backdoors for Mixed Integer Programs</a>; <a href="https://doi.org/10.48550/arXiv.2106.05080">10.48550/arXiv.2106.05080</a></li> <li>Sun, Jennifer J. and Kennedy, Ann, el al. (2021) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20210119-161625521">Task Programming: Learning Data Efficient Behavior Representations</a>; ISBN 978-1-6654-4509-2; 2021 IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR); 2875-2884; <a href="https://doi.org/10.1109/CVPR46437.2021.00290">10.1109/CVPR46437.2021.00290</a></li> <li>Li, Kejun and Tucker, Maegan, el al. (2021) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20210120-165248789">ROIAL: Region of Interest Active Learning for Characterizing Exoskeleton Gait Preference Landscapes</a>; ISBN 978-1-7281-9077-8; 2021 IEEE International Conference on Robotics and Automation (ICRA); 3212-3218; <a href="https://doi.org/10.1109/ICRA48506.2021.9560840">10.1109/ICRA48506.2021.9560840</a></li> <li>Ravi Tej, Akella and Azizzadenesheli, Kamyar, el al. (2021) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20201106-120212166">Deep Bayesian Quadrature Policy Optimization</a>; <a href="https://doi.org/10.48550/arXiv.2006.15637">10.48550/arXiv.2006.15637</a></li> <li>Yin, Tianwei and Wu, Zihui, el al. (2021) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20210604-142545306">End-to-End Sequential Sampling and Reconstruction for MR Imaging</a>; <a href="https://doi.org/10.48550/arXiv.2105.06460">10.48550/arXiv.2105.06460</a></li> <li>Sun, Jennifer J. and Karigo, Tomomi, el al. (2021) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20210510-093610124">The Multi-Agent Behavior Dataset: Mouse Dyadic Social Interactions</a>; <a href="https://doi.org/10.48550/arXiv.2104.02710">10.48550/arXiv.2104.02710</a></li> <li>Voloshin, Cameron and Jiang, Nan, el al. (2021) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20210510-100815979">Minimax Model Learning</a>; Proceedings of Machine Learning Research; Vol. 130; 1612-1620; <a href="https://doi.org/10.48550/arXiv.2103.02084">10.48550/arXiv.2103.02084</a></li> <li>Zhao, Eric and Liu, Anqi, el al. (2021) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20201110-074357009">Active Learning under Label Shift</a>; Proceedings of Machine Learning Research; Vol. 130; 3412-3420; <a href="https://doi.org/10.48550/arXiv.2007.08479">10.48550/arXiv.2007.08479</a></li> <li>Qin, Yidan and Allan, Max, el al. (2021) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20210225-132708240">Learning Invariant Representation of Tasks for Robust Surgical State Estimation</a>; IEEE Robotics and Automation Letters; Vol. 6; No. 2; 3208-3215; <a href="https://doi.org/10.1109/LRA.2021.3063014">10.1109/LRA.2021.3063014</a></li> <li>Ho, Dimitar and Le, Hoang M., el al. (2021) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20210510-094452379">Online Robust Control of Nonlinear Systems with Large Uncertainty</a>; Proceedings of Machine Learning Research; Vol. 130; 3475-3483; <a href="https://doi.org/10.48550/arXiv.2103.11055">10.48550/arXiv.2103.11055</a></li> <li>Nakka, Yashwanth Kumar and Liu, Anqi, el al. (2021) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20200526-150616242">Chance-Constrained Trajectory Optimization for Safe Exploration and Learning of Nonlinear Systems</a>; IEEE Robotics and Automation Letters; Vol. 6; No. 2; 389-396; <a href="https://doi.org/10.1109/LRA.2020.3044033">10.1109/LRA.2020.3044033</a></li> <li>Bernstein, Jeremy and Yue, Yisong (2021) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20210304-095340677">Computing the Information Content of Trained Neural Networks</a>; <a href="https://doi.org/10.48550/arXiv.2103.01045">10.48550/arXiv.2103.01045</a></li> <li>Abcouwer, Neil and Daftry, Shreyansh, el al. (2021) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20210119-161632609">Machine Learning Based Path Planning for Improved Rover Navigation</a>; ISBN 978-1-7281-7436-5; 2021 IEEE Aerospace Conference; 1-9; <a href="https://doi.org/10.1109/AERO50100.2021.9438337">10.1109/AERO50100.2021.9438337</a></li> <li>Cross, Logan and Cockburn, Jeffrey, el al. (2021) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20201217-133745087">Using deep reinforcement learning to reveal how the brain encodes abstract state-space representations in high-dimensional environments</a>; Neuron; Vol. 109; No. 4; 724-738; PMCID PMC7897245; <a href="https://doi.org/10.1016/j.neuron.2020.11.021">10.1016/j.neuron.2020.11.021</a></li> <li>Maser, Michael R. and Cui, Alexander Y., el al. (2021) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20201015-152733539">Multilabel Classification Models for the Prediction of Cross-Coupling Reaction Conditions</a>; Journal of Chemical Information and Modeling; Vol. 61; No. 1; 156-166; <a href="https://doi.org/10.1021/acs.jcim.0c01234">10.1021/acs.jcim.0c01234</a></li> <li>Liu, Anqi and Liu, Hao, el al. (2021) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20210225-132714927">Disentangling Observed Causal Effects from Latent Confounders using Method of Moments</a>; <a href="https://doi.org/10.48550/arXiv.2101.06614">10.48550/arXiv.2101.06614</a></li> <li>Marino, Joseph and Piché, Alexandre, el al. (2020) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20221222-185354379">Iterative Amortized Policy Optimization</a>; ISBN 9781713829546; 34th Conference on Neural Information Processing Systems (NeurIPS 2020); 1-15</li> <li>Song, Jialin and Lanka, Ravi, el al. 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