@article{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/hyz55-cqx24,
    authors = "Evans, Constantine Glen and O'Brien, Jackson and Winfree, Erik and Murugan, Arvind",
    title = "Pattern recognition in the nucleation kinetics of non-equilibrium self-assembly",
    journal = "Nature",
    publisher = "Nature Publishing Group",
    year = "2024",
    url = "https://authors.library.caltech.edu/records/hyz55-cqx24",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/hyz55-cqx24",
    issn = "0028-0836",
    doi = "10.1038/s41586-023-06890-z",
    volume = "625",
    number = "7995",
    pages = "500-507"
}


@article{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/ecqpt-jby45,
    authors = "Zolaktaf, Sedigheh and Dannenberg, Frits and Schmidt, Mark and Condon, Anne and Winfree, Erik",
    title = "Predicting DNA kinetics with a truncated continuous-time Markov chain method",
    journal = "Computational Biology and Chemistry",
    publisher = "Elsevier",
    year = "2023",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20230404-258849400.18",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/ecqpt-jby45",
    issn = "1476-9271",
    doi = "10.1016/j.compbiolchem.2023.107837",
    volume = "104",
    pages = "Art. No. 107837"
}


@other{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/x82d7-npr71,
    authors = "Evans, Constantine Glen and O'Brien, Jackson and Winfree, Erik and Murugan, Arvind",
    title = "Pattern recognition in the nucleation kinetics of non-equilibrium self-assembly",
    publisher = "arXiv",
    year = "2022",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20220809-232339739",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/x82d7-npr71",
    doi = "10.48550/arXiv.2207.06399"
}


@article{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/7n39p-sdc71,
    authors = "Johnson, Robert F. and Winfree, Erik",
    title = "Verifying polymer reaction networks using bisimulation",
    journal = "Theoretical Computer Science",
    publisher = "Elsevier",
    year = "2020",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20201029-152451680",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/7n39p-sdc71",
    issn = "0304-3975",
    doi = "10.1016/j.tcs.2020.08.007",
    volume = "843",
    pages = "84-114"
}


@article{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/xzz32-1hg70,
    authors = "Badelt, Stefan and Grun, Casey and Sarma, Karthik V. and Wolfe, Brian and Shin, Seung Woo and Winfree, Erik",
    title = "A domain-level DNA strand displacement reaction enumerator allowing arbitrary non-pseudoknotted secondary structures",
    journal = "Journal of the Royal Society Interface",
    publisher = "The Royal Society",
    year = "2020",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20190621-092351430",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/xzz32-1hg70",
    issn = "1742-5689",
    doi = "10.1098/rsif.2019.0866",
    volume = "17",
    number = "167",
    pages = "Art. No. 20190866"
}


@article{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/9eq07-4kq88,
    authors = "Clamons, Samuel and Qian, Lulu and Winfree, Erik",
    title = "Programming and simulating chemical reaction networks on a surface",
    journal = "Journal of the Royal Society Interface",
    publisher = "The Royal Society",
    year = "2020",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20200601-105515948",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/9eq07-4kq88",
    issn = "1742-5689",
    doi = "10.1098/rsif.2019.0790",
    volume = "17",
    number = "166",
    pmcid = "PMC7276541",
    pages = "Art. No. 20190790"
}


@article{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/1f9vj-0v377,
    authors = "Cappelletti, Daniele and Ortiz-Muñoz, Andrés and Anderson, David F. and Winfree, Erik",
    title = "Stochastic Chemical Reaction Networks for Robustly Approximating Arbitrary Probability Distributions",
    journal = "Theoretical Computer Science",
    publisher = "Elsevier",
    year = "2020",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20190619-141711510",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/1f9vj-0v377",
    issn = "0304-3975",
    doi = "10.1016/j.tcs.2019.08.013",
    volume = "801",
    pages = "64-95"
}


@inbook{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/38h63-czk16,
    authors = "Winfree, Erik",
    title = "DNA Computing and Molecular Programming",
    chapter = "Chemical Reaction Networks and Stochastic Local Search",
    address = "Cham",
    publisher = "Springer",
    year = "2019",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20200810-152243847",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/38h63-czk16",
    isbn = "978-3-030-26806-0",
    doi = "10.1007/978-3-030-26807-7\_1",
    pages = "1-20"
}


@inbook{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/pfxa8-yma36,
    authors = "Zolaktaf, Sedigheh and Dannenberg, Frits and Winfree, Erik and Bouchard-Côté, Alexandre and Schmidt, Mark and Condon, Anne",
    title = "DNA Computing and Molecular Programming",
    chapter = "Efficient Parameter Estimation for DNA Kinetics Modeled as Continuous-Time Markov Chains",
    address = "Cham",
    publisher = "Springer",
    year = "2019",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20200811-134907797",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/pfxa8-yma36",
    isbn = "978-3-030-26806-0",
    doi = "10.1007/978-3-030-26807-7\_5",
    pages = "80-99"
}


@inbook{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/5bxzs-r2p68,
    authors = "Brailovskaya, Tatiana and Gowri, Gokul and Yu, Sean and Winfree, Erik",
    title = "DNA Computing and Molecular Programming",
    chapter = "Reversible Computation Using Swap Reactions on a Surface",
    address = "Cham",
    publisher = "Springer",
    year = "2019",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20190730-094203386",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/5bxzs-r2p68",
    isbn = "978-3-030-26806-0",
    doi = "10.1007/978-3-030-26807-7\_10",
    pages = "174-196"
}


@article{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/b8q87-by423,
    authors = "Johnson, Robert and Dong, Qing and Winfree, Erik",
    title = "Verifying chemical reaction network implementations: A bisimulation approach",
    journal = "Theoretical Computer Science",
    publisher = "Elsevier",
    year = "2019",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20190617-104717955",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/b8q87-by423",
    issn = "0304-3975",
    doi = "10.1016/j.tcs.2018.01.002",
    volume = "765",
    pages = "3-46"
}


@article{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/d9h3w-7mw95,
    authors = "Shin, Seung Woo and Thachuk, Chris and Winfree, Erik",
    title = "Verifying chemical reaction network implementations: A pathway decomposition approach",
    journal = "Theoretical Computer Science",
    publisher = "Elsevier",
    year = "2019",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20190617-104718056",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/d9h3w-7mw95",
    issn = "0304-3975",
    doi = "10.1016/j.tcs.2017.10.011",
    volume = "765",
    pages = "67-96"
}


@article{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/pqt1c-h4948,
    authors = "Woods, Damien and Doty, David and Myhrvold, Cameron and Hui, Joy and Zhou, Felix and Yin, Peng and Winfree, Erik",
    title = "Diverse and robust molecular algorithms using reprogrammable DNA self-assembly",
    journal = "Nature",
    publisher = "Nature Publishing Group",
    year = "2019",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20181211-124932769",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/pqt1c-h4948",
    issn = "0028-0836",
    doi = "10.1038/s41586-019-1014-9",
    volume = "567",
    number = "3",
    pages = "366-372"
}


@article{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/0s4hg-g5w93,
    authors = "Wang, Boya and Thachuk, Chris and Ellington, Andrew D. and Winfree, Erik and Soloveichik, David",
    title = "Effective design principles for leakless strand displacement systems",
    journal = "Proceedings of the National Academy of Sciences of the United States of America",
    publisher = "National Academy of Sciences",
    year = "2018",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20181213-151040513",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/0s4hg-g5w93",
    issn = "0027-8424",
    doi = "10.1073/pnas.1806859115",
    volume = "115",
    number = "52",
    pmcid = "PMC6310779",
    pages = "E12182-E12191"
}


@article{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/x2aq5-g3803,
    authors = "Berleant, Joseph and Berlind, Christopher and Badelt, Stefan and Dannenberg, Frits and Schaeffer, Joseph and Winfree, Erik",
    title = "Automated sequence-level analysis of kinetics and thermodynamics for domain-level DNA strand-displacement systems",
    journal = "Journal of the Royal Society Interface",
    publisher = "The Royal Society",
    year = "2018",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20190213-154533494",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/x2aq5-g3803",
    issn = "1742-5689",
    doi = "10.1098/rsif.2018.0107",
    volume = "15",
    number = "149",
    pages = "Art. No. 20180107"
}


@inbook{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/txa7d-9ka65,
    authors = "Evans, Constantine G. and Winfree, Erik",
    title = "DNA Computing and Molecular Programming",
    chapter = "Optimizing Tile Set Size While Preserving Proofreading with a DNA Self-assembly Compiler",
    address = "Cham",
    publisher = "Springer",
    year = "2018",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20200811-140005797",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/txa7d-9ka65",
    isbn = "978-3-030-00029-5",
    doi = "10.1007/978-3-030-00030-1\_3",
    pages = "37-54"
}


@article{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/715zz-3jn69,
    authors = "Srinivas, Niranjan and Parkin, James and Seelig, Georg and Winfree, Erik and Soloveichik, David",
    title = "Enzyme-Free Nucleic Acid Dynamical Systems",
    journal = "Science",
    publisher = "American Association for the Advancement of Science",
    year = "2017",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20170731-085900027",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/715zz-3jn69",
    issn = "0036-8075",
    doi = "10.1126/science.aal2052",
    volume = "358",
    number = "6369",
    pages = "Art. No. eaal2052"
}


@article{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/cngnd-evx96,
    authors = "Thubagere, Anupama J. and Li, Wei and Johnson, Robert F. and Chen, Zibo and Doroudi, Shayan and Lee, Yae Lim and Izatt, Gregory and Wittman, Sarah and Srinivas, Niranjan and Woods, Damien and Winfree, Erik and Qian, Lulu",
    title = "A cargo-sorting DNA robot",
    journal = "Science",
    publisher = "American Association for the Advancement of Science",
    year = "2017",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20170731-174213645",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/cngnd-evx96",
    issn = "0036-8075",
    doi = "10.1126/science.aan6558",
    volume = "357",
    number = "6356",
    pages = "Art. No. eaan6558"
}


@inbook{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/1pfn7-t7n80,
    authors = "Badelt, Stefan and Shin, Seung Woo and Johnson, Robert F. and Dong, Qing and Thachuk, Chris and Winfree, Erik",
    title = "DNA Computing and Molecular Programming",
    chapter = "A General-Purpose CRN-to-DSD Compiler with Formal Verification, Optimization, and Simulation Capabilities",
    address = "Cham, Switzerland",
    publisher = "Springer",
    year = "2017",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20181126-085056720",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/1pfn7-t7n80",
    isbn = "978-3-319-66798-0",
    doi = "10.1007/978-3-319-66799-7\_15",
    pages = "232-248"
}


@inbook{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/tgwe9-zwv34,
    authors = "Poole, William and Ortiz-Muñoz, Andrés and Behera, Abhishek and Jones, Nick S. and Ouldridge, Thomas E. and Winfree, Erik and Gopalkrishnan, Manoj",
    title = "DNA Computing and Molecular Programming",
    chapter = "Chemical Boltzmann Machines",
    address = "Cham, Switzerland",
    publisher = "Springer",
    year = "2017",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20181126-090207704",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/tgwe9-zwv34",
    isbn = "978-3-319-66798-0",
    doi = "10.1007/978-3-319-66799-7\_14",
    pages = "210-231"
}


@inbook{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/xp5nf-fxf94,
    authors = "Zolaktaf, Sedigheh and Dannenberg, Frits and Rudelis, Xander and Condon, Anne and Schaeffer, Joseph M. and Schmidt, Mark and Thachuk, Chris and Winfree, Erik",
    title = "DNA Computing and Molecular Programming",
    chapter = "Inferring Parameters for an Elementary Step Model of DNA Structure Kinetics with Locally Context-Dependent Arrhenius Rates",
    address = "Cham, Switzerland",
    publisher = "Springer",
    year = "2017",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20181126-091545698",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/xp5nf-fxf94",
    isbn = "978-3-319-66798-0",
    doi = "10.1007/978-3-319-66799-7\_12",
    pages = "172-187"
}


@article{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/ms029-b9h13,
    authors = "Evans, Constantine G. and Winfree, Erik",
    title = "Physical principles for DNA tile self-assembly",
    journal = "Chemical Society Reviews",
    publisher = "Royal Society of Chemistry",
    year = "2017",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20170515-101843093",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/ms029-b9h13",
    issn = "0306-0012",
    doi = "10.1039/c6cs00745g",
    volume = "46",
    number = "12",
    pages = "3808-3829"
}


@inbook{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/sm0c6-t7n21,
    authors = "Schiefer, Nicholas and Winfree, Erik",
    title = "DNA Computing and Molecular Programming",
    chapter = "Time Complexity of Computation and Construction in the Chemical Reaction Network-Controlled Tile Assembly Model",
    address = "Cham, Switzerland",
    publisher = "Springer",
    year = "2016",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20170718-122926337",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/sm0c6-t7n21",
    isbn = "978-3-319-43993-8",
    doi = "10.1007/978-3-319-43994-5\_11",
    pages = "165-182"
}


@inbook{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/5a09z-v9n43,
    authors = "Johnson, Robert F. and Dong, Qing and Winfree, Erik",
    title = "DNA Computing and Molecular Programming",
    chapter = "Verifying Chemical Reaction Network Implementations: A Bisimulation Approach",
    address = "Cham",
    publisher = "Springer",
    year = "2016",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20191007-155606936",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/5a09z-v9n43",
    isbn = "9783319439938",
    doi = "10.1007/978-3-319-43994-5\_8",
    pages = "114-134"
}


@article{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/zg79y-rzy97,
    authors = "Hariadi, Rizal F. and Winfree, Erik and Yurke, Bernard",
    title = "Determining hydrodynamic forces in bursting bubbles using DNA nanotube mechanics",
    journal = "Proceedings of the National Academy of Sciences of the United States of America",
    publisher = "National Academy of Sciences",
    year = "2015",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20151030-075058188",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/zg79y-rzy97",
    issn = "0027-8424",
    doi = "10.1073/pnas.1424673112",
    volume = "112",
    number = "45",
    pmcid = "PMC4653207",
    pages = "E6086-E6095"
}


@inbook{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/b9keh-ytk18,
    authors = "Thachuk, Chris and Winfree, Erik and Soloveichik, David",
    title = "DNA Computing and Molecular Programming",
    chapter = "Leakless DNA Strand Displacement Systems",
    address = "Cham",
    publisher = "Springer",
    year = "2015",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20200812-120743269",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/b9keh-ytk18",
    isbn = "978-3-319-21998-1",
    doi = "10.1007/978-3-319-21999-8\_9",
    pages = "133-153"
}


@inbook{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/pvacj-t2m32,
    authors = "Schaeffer, Joseph Malcolm and Thachuk, Chris and Winfree, Erik",
    title = "DNA Computing and Molecular Programming",
    chapter = "Stochastic Simulation of the Kinetics of Multiple Interacting Nucleic Acid Strands",
    address = "Cham",
    publisher = "Springer",
    year = "2015",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20200811-152309514",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/pvacj-t2m32",
    isbn = "978-3-319-21998-1",
    doi = "10.1007/978-3-319-21999-8\_13",
    pages = "194-211"
}


@article{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/qmv18-wee30,
    authors = "Schulman, Rebecca and Wright, Christina and Winfree, Erik",
    title = "Increasing Redundancy Exponentially Reduces Error Rates during Algorithmic Self-Assembly",
    journal = "ACS Nano",
    publisher = "American Chemical Society",
    year = "2015",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20150518-090813566",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/qmv18-wee30",
    issn = "1936-0851",
    doi = "10.1021/nn507493s",
    volume = "9",
    number = "6",
    pages = "5760-5771"
}


@article{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/zfjk8-bpp45,
    authors = "Hariadi, Rizal F. and Yurke, Bernard and Winfree, Erik",
    title = "Thermodynamics and kinetics of DNA nanotube polymerization from single-filament measurements",
    journal = "Chemical Science",
    publisher = "Royal Society of Chemistry",
    year = "2015",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20150302-131739870",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/zfjk8-bpp45",
    issn = "2041-6520",
    doi = "10.1039/c3sc53331j",
    volume = "6",
    number = "4",
    pmcid = "PMC5645730",
    pages = "2252-2267"
}


@inbook{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/0tq84-hgv56,
    authors = "Schiefer, Nicholas and Winfree, Erik",
    title = "DNA Computing and Molecular Programming: 21st International Conference, DNA 21, Boston and Cambridge, MA, USA, August 17-21, 2015. Proceedings",
    chapter = "Universal Computation and Optimal Construction in the Chemical Reaction Network-Controlled Tile Assembly Model",
    address = "Cham, Switzerland",
    publisher = "Springer",
    year = "2015",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20150904-111819530",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/0tq84-hgv56",
    isbn = "978-3-319-21998-1",
    doi = "10.1007/978-3-319-21999-8\_3",
    pages = "34-54"
}


@inbook{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/zneh1-k5y76,
    authors = "Qian, Lulu and Winfree, Erik",
    title = "DNA Computing and Molecular Programming",
    chapter = "Parallel and Scalable Computation and Spatial Dynamics with DNA-Based Chemical Reaction Networks on a Surface",
    address = "Cham, Switzerland",
    publisher = "Springer",
    year = "2014",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20170719-084200345",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/zneh1-k5y76",
    isbn = "978-3-319-11294-7",
    doi = "10.1007/978-3-319-11295-4\_8",
    pages = "114-131"
}


@article{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/fhx14-66450,
    authors = "Weitz, Maximilian and Kim, Jongmin and Kapsner, Korbinian and Winfree, Erik and Franco, Elisa and Simmel, Friedrich C.",
    title = "Diversity in the dynamical behaviour of a compartmentalized programmable biochemical oscillator",
    journal = "Nature Chemistry",
    publisher = "Nature Publishing Group",
    year = "2014",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20140424-093502261",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/fhx14-66450",
    issn = "1755-4330",
    doi = "10.1038/NCHEM.1869",
    volume = "6",
    number = "4",
    pages = "295-302"
}


@article{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/qbzx4-yr147,
    authors = "Srinivas, Niranjan and Ouldridge, Thomas E. and Šulc, Petr and Schaeffer, Joseph M. and Yurke, Bernard and Louis, Ard A. and Doye, Jonathan P. K. and Winfree, Erik",
    title = "On the biophysics and kinetics of toehold-mediated DNA strand displacement",
    journal = "Nucleic Acids Research",
    publisher = "Oxford University Press",
    year = "2013",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20140210-082347979",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/qbzx4-yr147",
    issn = "0305-1048",
    doi = "10.1093/nar/gkt801",
    volume = "41",
    number = "22",
    pmcid = "PMC3905871",
    pages = "10641-10658"
}


@article{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/mc03v-3h408,
    authors = "Zhang, David Yu and Hariadi, Rizal F. and Choi, Harry M. T. and Winfree, Erik",
    title = "Integrating DNA strand-displacement circuitry with DNA tile self-assembly",
    journal = "Nature Communications",
    publisher = "Nature Publishing Group",
    year = "2013",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20131002-145120699",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/mc03v-3h408",
    issn = "2041-1723",
    doi = "10.1038/ncomms2965",
    volume = "4",
    number = "6",
    pmcid = "PMC3709499",
    pages = "Art. No. 1965"
}


@inbook{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/esd5f-zr675,
    authors = "Woods, Damien and Chen, Ho-Lin and Goodfriend, Scott and Dabby, Nadine and Winfree, Erik and Yin, Peng",
    title = "Proceedings of the 4th conference on Innovations in Theoretical Computer Science",
    chapter = "Active Self-Assembly of Algorithmic Shapes and Patterns  in Polylogarithmic Time",
    address = "New York, NY",
    publisher = "ACM",
    year = "2013",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20130128-100842529",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/esd5f-zr675",
    isbn = "978-1-4503-1859-4",
    doi = "10.1145/2422436.2422476",
    pages = "353-354"
}


@inbook{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/5mdh8-pp183,
    authors = "Evans, Constantine G. and Winfree, Erik",
    title = "DNA Computing and Molecular Programming",
    chapter = "DNA Sticky End Design and Assignment for Robust Algorithmic Self-assembly",
    address = "Cham, Switzerland",
    publisher = "Springer",
    year = "2013",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20140530-150254025",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/5mdh8-pp183",
    isbn = "978-3-319-01927-7",
    doi = "10.1007/978-3-319-01928-4\_5",
    pages = "61-75"
}


@article{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/1m0y1-2zx98,
    authors = "Subsoontorn, Pakpoom and Kim, Jongmin and Winfree, Erik",
    title = "Ensemble Bayesian Analysis of Bistability in a Synthetic Transcriptional Switch",
    journal = "ACS Synthetic Biology",
    publisher = "American Chemical Society",
    year = "2012",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20120803-102247969",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/1m0y1-2zx98",
    issn = "2161-5063",
    doi = "10.1021/sb300018h",
    volume = "1",
    number = "8",
    pages = "299-316"
}


@article{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/r3nca-b1y45,
    authors = "Evans, Constantine G. and Hariadi, Rizal F. and Winfree, Erik",
    title = "Direct Atomic Force Microscopy Observation of DNA Tile Crystal Growth at the Single-Molecule Level",
    journal = "Journal of the American Chemical Society",
    publisher = "American Chemical Society",
    year = "2012",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20120720-132124836",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/r3nca-b1y45",
    issn = "0002-7863",
    doi = "10.1021/ja301026z",
    volume = "134",
    number = "25",
    pages = "10485-10492"
}


@article{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/xhj14-45j48,
    authors = "Schulman, Rebecca and Winfree, Erik",
    title = "Simple evolution of complex crystal species",
    journal = "Natural Computing",
    publisher = "Springer",
    year = "2012",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20120625-095143843",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/xhj14-45j48",
    issn = "1567-7818",
    doi = "10.1007/s11047-011-9302-9",
    volume = "11",
    number = "2",
    pages = "187-197"
}


@article{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/kb4e2-pct57,
    authors = "Schulman, Rebecca and Yurke, Bernard and Winfree, Erik",
    title = "Robust self-replication of combinatorial information via crystal growth and scission",
    journal = "Proceedings of the National Academy of Sciences of the United States of America",
    publisher = "National Academy of Sciences",
    year = "2012",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20120516-075032994",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/kb4e2-pct57",
    issn = "0027-8424",
    doi = "10.1073/pnas.1117813109",
    volume = "109",
    number = "17",
    pmcid = "PMC3340064",
    pages = "6405-6410"
}


@article{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/3xw46-ycg28,
    authors = "Franco, Elisa and Friedrichs, Eike and Kim, Jongmin and Jungmann, Ralf and Murray, Richard M. and Winfree, Erik and Simmel, Friedrich C.",
    title = "Timing molecular motion and production with a synthetic transcriptional clock",
    journal = "Proceedings of the National Academy of Sciences of the United States of America",
    publisher = "National Academy of Sciences",
    year = "2011",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20111020-091851903",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/3xw46-ycg28",
    issn = "0027-8424",
    doi = "10.1073/pnas.1100060108",
    volume = "108",
    number = "40",
    pmcid = "PMC3189071",
    pages = "E784-E793"
}


@article{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/3zjx7-mx574,
    authors = "Qian, Lulu and Winfree, Erik",
    title = "A simple DNA gate motif for synthesizing large-scale circuits",
    journal = "Journal of the Royal Society Interface",
    publisher = "The Royal Society",
    year = "2011",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20110805-144518758",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/3zjx7-mx574",
    issn = "1742-5689",
    doi = "10.1098/rsif.2010.0729",
    volume = "8",
    number = "62",
    pages = "1281-1297"
}


@article{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/fryqk-9d474,
    authors = "Qian, Lulu and Winfree, Erik and Bruck, Jehoshua",
    title = "Neural network computation with DNA strand displacement cascades",
    journal = "Nature",
    publisher = "Nature Publishing Group",
    year = "2011",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20110801-112437228",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/fryqk-9d474",
    issn = "0028-0836",
    doi = "10.1038/nature10262",
    volume = "475",
    number = "7356",
    pages = "368-372"
}


@article{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/akcvd-thp06,
    authors = "Qian, Lulu and Winfree, Erik",
    title = "Scaling Up Digital Circuit Computation with DNA Strand Displacement Cascades",
    journal = "Science",
    publisher = "American Association for the Advancement of Science",
    year = "2011",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20110617-132231112",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/akcvd-thp06",
    issn = "0036-8075",
    doi = "10.1126/science.1200520",
    volume = "332",
    number = "6034",
    pages = "1196-1201"
}


@inbook{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/jm59x-m4z18,
    authors = "Densmore, Douglas and Horowitz, Mark and Krishnaswamy, Smita and Shen, Xiling and Arkin, Adam and Winfree, Erik and Voigt, Chris",
    title = "Proceedings of the 48th Design Automation Conference",
    chapter = "Joint DAC/IWBDA special session design and synthesis of biological circuits",
    address = "New York",
    publisher = "Association for Computing Machinery (ACM)",
    year = "2011",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20120521-113649301",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/jm59x-m4z18",
    isbn = "978-1-4503-0636-2",
    doi = "10.1145/2024724.2024750",
    pages = "114-115"
}


@article{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/3jcyw-ct451,
    authors = "Kim, Jongmin and Winfree, Erik",
    title = "Synthetic in vitro transcriptional oscillators",
    journal = "Molecular Systems Biology",
    publisher = "Nature Publishing Group",
    year = "2011",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20110401-112412294",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/3jcyw-ct451",
    issn = "1744-4292",
    doi = "10.1038/msb.2010.119",
    volume = "7",
    pmcid = "PMC3063688",
    pages = "Art. No. 465"
}


@other{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/qrkyb-dzm06,
    authors = "Subsoontorn, Pakpoom and Kim, Jongmin and Winfree, Erik",
    title = "Bistability of an In Vitro Synthetic Autoregulatory Switch",
    publisher = "California Institute of Technology",
    year = "2011",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20111020-092905148",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/qrkyb-dzm06",
    doi = "10.48550/arXiv.1101.0723"
}


@inbook{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/dt6t7-c2710,
    authors = "Qian, Lulu and Soloveichik, David and Winfree, Erik",
    title = "DNA computing and molecular programming",
    chapter = "Efficient Turing-Universal Computation with DNA Polymers",
    address = "Berlin",
    publisher = "Springer",
    year = "2011",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20111006-081731222",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/dt6t7-c2710",
    isbn = "978-3-642-18304-1",
    doi = "10.1007/978-3-642-18305-8\_12",
    pages = "123-140"
}


@inbook{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/52pjb-zvg80,
    authors = "Schulman, Rebecca and Winfree, Erik",
    title = "DNA Computing and Molecular Programming",
    chapter = "Simple Evolution of Complex Crystal Species",
    address = "Berlin",
    publisher = "Springer",
    year = "2011",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20111025-131913963",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/52pjb-zvg80",
    isbn = "978-3-642-18304-1",
    doi = "10.1007/978-3-642-18305-8\_14",
    pages = "147-161"
}


@article{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/74b6p-jfw34,
    authors = "Zhang, David Yu and Winfree, Erik",
    title = "Robustness and modularity properties of a non-covalent DNA catalytic reaction",
    journal = "Nucleic Acids Research",
    publisher = "Oxford University Press",
    year = "2010",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20100709-132352904",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/74b6p-jfw34",
    issn = "0305-1048",
    doi = "10.1093/nar/gkq088",
    volume = "38",
    number = "12",
    pages = "4182-4197"
}


@article{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/5n7eg-e4d27,
    authors = "Lund, Kyle and Manzo, Anthony J. and Dabby, Nadine and Michelotti, Nicole and Johnson-Buck, Alexander and Nangreave, Jeanette and Taylor, Steven and Pei, Renjun and Stojanovic, Milan N. and Walter, Nils G. and Winfree, Erik and Yan, Hao",
    title = "Molecular robots guided by prescriptive landscapes",
    journal = "Nature",
    publisher = "Nature Publishing Group",
    year = "2010",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20100602-145349454",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/5n7eg-e4d27",
    issn = "0028-0836",
    doi = "10.1038/nature09012",
    volume = "465",
    number = "7295",
    pages = "206-210"
}


@article{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/m050w-byd24,
    authors = "Soloveichik, David and Seelig, Georg and Winfree, Erik",
    title = "DNA as a universal substrate for chemical kinetics",
    journal = "Proceedings of the National Academy of Sciences of the United States of America",
    publisher = "National Academy of Sciences",
    year = "2010",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20100413-092145583",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/m050w-byd24",
    issn = "0027-8424",
    doi = "10.1073/pnas.0909380107",
    volume = "107",
    number = "12",
    pmcid = "PMC2851759",
    pages = "5393-5398"
}


@article{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/2j9f6-zkm23,
    authors = "Maune, Hareem T. and Han, Si-ping and Barish, Robert D. and Bockrath, Marc and Goddard, William A., III and Rothemund, Paul W. K. and Winfree, Erik",
    title = "Self-assembly of carbon nanotubes into two-dimensional geometries using DNA origami templates",
    journal = "Nature Nanotechnology",
    publisher = "Nature Publishing Group",
    year = "2010",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20100305-145736806",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/2j9f6-zkm23",
    issn = "1748-3387",
    doi = "10.1038/nnano.2009.311",
    volume = "5",
    number = "1",
    pages = "61-66"
}


@article{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/a4spy-d6v98,
    authors = "Zhang, David Yu and Winfree, Erik",
    title = "Control of DNA Strand Displacement Kinetics Using Toehold Exchange",
    journal = "Journal of the American Chemical Society",
    publisher = "American Chemical Society",
    year = "2009",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20091207-100833395",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/a4spy-d6v98",
    issn = "0002-7863",
    doi = "10.1021/ja906987s",
    volume = "131",
    number = "47",
    pages = "17303-17314"
}


@article{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/yryqp-pwa77,
    authors = "Fujibayashi, Kenichi and Zhang, David Yu and Winfree, Erik and Murata, Satoshi",
    title = "Error suppression mechanisms for DNA tile self-assembly and their simulation",
    journal = "Natural Computing",
    publisher = "Springer",
    year = "2009",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20111020-105328142",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/yryqp-pwa77",
    issn = "1567-7818",
    doi = "10.1007/s11047-008-9093-9",
    volume = "8",
    number = "3",
    pages = "589-612"
}


@inbook{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/pgm0a-wzh97,
    authors = "Cook, Matthew and Soloveichik, David and Winfree, Erik and Bruck, Jehoshua",
    title = "Algorithmic Bioprocesses",
    chapter = "Programmability of Chemical Reaction Networks",
    address = "Berlin",
    publisher = "Springer-Verlag",
    year = "2009",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20111020-103016495",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/pgm0a-wzh97",
    isbn = "978-3-540-88868-0",
    doi = "10.1007/978-3-540-88869-7\_27",
    pages = "543-584"
}


@article{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/aqq41-kdh05,
    authors = "Barish, Robert D. and Schulman, Rebecca and Rothemund, Paul W. K. and Winfree, Erik",
    title = "An information-bearing seed for nucleating algorithmic self-assembly",
    journal = "Proceedings of the National Academy of Sciences of the United States of America",
    publisher = "National Academy of Sciences",
    year = "2009",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20090708-083842545",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/aqq41-kdh05",
    issn = "0027-8424",
    doi = "10.1073/pnas.0808736106",
    volume = "106",
    number = "15",
    pmcid = "PMC2660060",
    pages = "6054-6059"
}


@inbook{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/6ktsa-7vy83,
    authors = "Qian, Lulu and Winfree, Erik",
    title = "DNA computing : 14th International Meeting on DNA Computing, DNA 14, Prague, Czech Republic, June 2-9, 2008 : revised selected papers",
    chapter = "A Simple DNA Gate Motif for Synthesizing Large-Scale Circuits",
    address = "New York",
    publisher = "Springer",
    year = "2009",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20100707-102356969",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/6ktsa-7vy83",
    isbn = "978-3-642-03075-8",
    doi = "10.1007/978-3-642-03076-5",
    pages = "70-89"
}


@inbook{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/n9ee2-a1452,
    authors = "Soloveichik, David and Seelig, Georg and Winfree, Erik",
    title = "DNA Computing",
    chapter = "DNA as a Universal Substrate for Chemical Kinetics",
    address = "Berlin",
    publisher = "Springer",
    year = "2009",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20200812-121640271",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/n9ee2-a1452",
    isbn = "978-3-642-03075-8",
    doi = "10.1007/978-3-642-03076-5\_6",
    pages = "57-69"
}


@article{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/hg9r1-81463,
    authors = "Schulman, Rebecca and Winfree, Erik",
    title = "Programmable Control of Nucleation for Algorithmic Self-Assembly",
    journal = "SIAM Journal on Computing",
    publisher = "Society for Industrial and Applied Mathematics",
    year = "2009",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20100615-083346817",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/hg9r1-81463",
    issn = "0097-5397",
    doi = "10.1137/070680266",
    volume = "39",
    number = "4",
    pages = "1581-1616"
}


@article{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/1abkk-rra71,
    authors = "Soloveichik, David and Cook, Matthew and Winfree, Erik and Bruck, Jehoshua",
    title = "Computation with finite stochastic chemical reaction networks",
    journal = "Natural Computing",
    publisher = "Springer",
    year = "2008",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20111020-132840264",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/1abkk-rra71",
    issn = "1567-7818",
    doi = "10.1007/s11047-008-9067-y",
    volume = "7",
    number = "4",
    pages = "615-633"
}


@article{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/7w85s-mcj45,
    authors = "Zhang, David Yu and Winfree, Erik",
    title = "Dynamic allosteric control of noncovalent DNA catalysis reactions",
    journal = "Journal of the American Chemical Society",
    publisher = "American Chemical Society",
    year = "2008",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:ZHAjacs08",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/7w85s-mcj45",
    issn = "0002-7863",
    doi = "10.1021/ja803318t",
    volume = "130",
    number = "42",
    pages = "13921-13926"
}


@other{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/gf8h4-ta232,
    authors = "Cook, Matthew and Soloveichik, David and Winfree, Erik and Bruck, Jehoshua",
    title = "Programmability of Chemical Reaction Networks",
    publisher = "California Institute of Technology",
    year = "2008",
    url = "https://resolver.caltech.edu/CaltechPARADISE:2008.ETR090",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/gf8h4-ta232"
}


@article{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/1n480-6jz86,
    authors = "Fujibayashi, Kenichi and Hariadi, Rizal and Park, Sung Ha and Winfree, Erik and Murata, Satoshi",
    title = "Toward reliable algorithmic self-assembly of DNA tiles: A fixed-width cellular automaton pattern",
    journal = "Nano Letters",
    publisher = "American Chemical Society",
    year = "2008",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20110309-104158035",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/1n480-6jz86",
    issn = "1530-6984",
    doi = "10.1021/nl0722830",
    volume = "8",
    number = "7",
    pages = "1791-1797"
}


@article{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/7gj5t-g0873,
    authors = "Soloveichik, David and Cook, Matthew and Winfree, Erik",
    title = "Combining self-healing and proofreading in self-assembly",
    journal = "Natural Computing",
    publisher = "Springer",
    year = "2008",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20111020-141746718",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/7gj5t-g0873",
    issn = "1567-7818",
    doi = "10.1007/s11047-007-9036-x",
    volume = "7",
    number = "2",
    pages = "203-218"
}


@article{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/hxxek-42p61,
    authors = "Schulman, Rebecca and Winfree, Erik",
    title = "How crystals that sense and respond to their environments could evolve",
    journal = "Natural Computing",
    publisher = "Springer",
    year = "2008",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20111020-140158137",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/hxxek-42p61",
    issn = "1567-7818",
    doi = "10.1007/s11047-007-9046-8",
    volume = "7",
    number = "2",
    pages = "219-237"
}


@inbook{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/2n7w7-0kb24,
    authors = "Winfree, Erik",
    title = "ASPLOS XIII Proceedings of the 13th international conference on Architectural support for programming languages and operating systems",
    chapter = "Toward molecular programming with DNA",
    address = "New York, NY",
    publisher = "ACM",
    year = "2008",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20170105-124404623",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/2n7w7-0kb24",
    isbn = "978-1-59593-958-6",
    doi = "10.1145/1346281.1346282"
}


@article{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/mnqg5-fnw89,
    authors = "Zhang, David Yu and Turberfield, Andrew J. and Yurke, Bernard and Winfree, Erik",
    title = "Engineering entropy-driven reactions and networks catalyzed by DNA",
    journal = "Science",
    publisher = "American Association for the Advancement of Science",
    year = "2007",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20110309-104159433",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/mnqg5-fnw89",
    issn = "0036-8075",
    doi = "10.1126/science.1148532",
    volume = "318",
    number = "5853",
    pages = "1121-1125"
}


@article{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/jm01n-vjr56,
    authors = "Schulman, Rebecca and Winfree, Erik",
    title = "Synthesis of crystals with a programmable kinetic barrier to nucleation",
    journal = "Proceedings of the National Academy of Sciences of the United States of America",
    publisher = "National Academy of Sciences",
    year = "2007",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:SCHUpnas07",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/jm01n-vjr56",
    issn = "0027-8424",
    doi = "10.1073/pnas.0701467104",
    volume = "104",
    number = "39",
    pmcid = "PMC1986573",
    pages = "15236-15241"
}


@other{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/f308m-93262,
    authors = "Soloveichik, David and Cook, Matthew and Winfree, Erik and Bruck, Jehoshua",
    title = "Computation with Finite Stochastic Chemical Reaction Networks",
    publisher = "California Institute of Technology",
    year = "2007",
    url = "https://resolver.caltech.edu/CaltechPARADISE:2007.ETR085",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/f308m-93262"
}


@article{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/xgpm7-ryz35,
    authors = "Chen, Ho-Lin and Schulman, Rebecca and Goel, Ashish and Winfree, Erik",
    title = "Reducing facet nucleation during algorithmic self-assembly",
    journal = "Nano Letters",
    publisher = "American Chemical Society",
    year = "2007",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20110309-104159746",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/xgpm7-ryz35",
    issn = "1530-6984",
    doi = "10.1021/nl070793o",
    volume = "7",
    number = "9",
    pages = "2913-2919"
}


@article{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/nmff2-tmc40,
    authors = "Venkataraman, Suvir and Dirks, Robert M. and Rothemund, Paul W. K. and Winfree, Erik and Pierce, Niles A.",
    title = "An autonomous polymerization motor powered by DNA hybridization",
    journal = "Nature Nanotechnology",
    publisher = "Nature Publishing Group",
    year = "2007",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20110216-154211699",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/nmff2-tmc40",
    issn = "1748-3387",
    doi = "10.1038/nnano.2007.225",
    volume = "2",
    number = "8",
    pages = "490-494"
}


@article{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/1ykym-b5q43,
    authors = "Soloveichik, David and Winfree, Erik",
    title = "Complexity of Self-Assembled Shapes",
    journal = "SIAM Journal on Computing",
    publisher = "Society of Industrial and Applied Mathematics",
    year = "2007",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:SOLsiamjc07",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/1ykym-b5q43",
    issn = "0097-5397",
    doi = "10.1137/S0097539704446712",
    volume = "36",
    number = "6",
    pages = "1544-1569"
}


@article{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/p98fy-fvv11,
    authors = "Dirks, Robert M. and Bois, Justin S. and Schaeffer, Joseph M. and Winfree, Erik and Pierce, Niles A.",
    title = "Thermodynamic Analysis of Interacting Nucleic Acid Strands",
    journal = "SIAM Review",
    publisher = "Society for Industrial and Applied Mathematics",
    year = "2007",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:DIRsiamrev07",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/p98fy-fvv11",
    issn = "0036-1445",
    doi = "10.1137/060651100",
    volume = "49",
    number = "1",
    pages = "65-88"
}


@article{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/xv2ha-mzt94,
    authors = "Kim, Jongmin and White, Kristin S. and Winfree, Erik",
    title = "Construction of an in vitro bistable circuit from synthetic transcriptional switches",
    journal = "Molecular Systems Biology",
    publisher = "Nature Publishing Group",
    year = "2006",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20110309-104200419",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/xv2ha-mzt94",
    issn = "1744-4292",
    doi = "10.1038/msb4100099",
    volume = "2",
    pmcid = "PMC1762086",
    pages = "Art. No. 68"
}


@article{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/vf8a9-45s13,
    authors = "Seelig, Georg and Soloveichik, David and Zhang, David Yu and Winfree, Erik",
    title = "Enzyme-free nucleic acid logic circuits",
    journal = "Science",
    publisher = "American Association for the Advancement of Science",
    year = "2006",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20110309-104200565",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/vf8a9-45s13",
    issn = "0036-8075",
    doi = "10.1126/science.1132493",
    volume = "314",
    number = "5805",
    pages = "1585-1588"
}


@article{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/549jn-ecp58,
    authors = "Seelig, Georg and Yurke, Bernard and Winfree, Erik",
    title = "Catalyzed relaxation of a metastable DNA fuel",
    journal = "Journal of the American Chemical Society",
    publisher = "American Chemical Society",
    year = "2006",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20110309-104200898",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/549jn-ecp58",
    issn = "0002-7863",
    doi = "10.1021/ja0635635",
    volume = "128",
    number = "37",
    pages = "12211-12220"
}


@inbook{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/awcyr-76y79,
    authors = "Winfree, Erik",
    title = "Proceedings of the 2006 International Conference on Microtechnologies in Medicine and Biology",
    chapter = "Algorithmic Self-Assembly of DNA",
    address = "Piscataway, NJ",
    publisher = "IEEE",
    year = "2006",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20110810-095116353",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/awcyr-76y79",
    isbn = "978-1-4244-0337-0",
    pages = "4-4"
}


@inbook{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/f3tmg-p8p50,
    authors = "Soloveichik, David and Winfree, Erik",
    title = "DNA Computing",
    chapter = "Complexity of compact proofreading for self-assembled patterns",
    address = "Berlin",
    publisher = "Springer",
    year = "2006",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20110309-104201054",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/f3tmg-p8p50",
    isbn = "3-540-34161-7",
    doi = "10.1007/11753681\_24",
    pages = "305-324"
}


@inbook{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/e41xe-mmr22,
    authors = "Winfree, Erik",
    title = "Unconventional Computation",
    chapter = "Fault-Tolerance in Biochemical Systems",
    address = "Berlin",
    publisher = "Springer",
    year = "2006",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20190822-092012516",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/e41xe-mmr22",
    isbn = "978-3-540-38593-6",
    doi = "10.1007/11839132\_3",
    pages = "26"
}


@inbook{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/cdegn-xhs37,
    authors = "Winfree, Erik",
    title = "Nanotechnology: Science and Computation",
    chapter = "Self-Healing Tile Sets",
    address = "Berlin",
    publisher = "Springer",
    year = "2006",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20111021-093324589",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/cdegn-xhs37",
    isbn = "9783540302964",
    doi = "10.1007/3-540-30296-4\_4",
    pages = "55-78"
}


@article{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/5e5ep-78851,
    authors = "Barish, Robert D. and Rothemund, Paul W. K. and Winfree, Erik",
    title = "Two computational primitives for algorithmic self-assembly: Copying and counting",
    journal = "Nano Letters",
    publisher = "American Chemical Society",
    year = "2005",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20110309-104201220",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/5e5ep-78851",
    issn = "1530-6984",
    doi = "10.1021/nl052038l",
    volume = "5",
    number = "12",
    pages = "2586-2592"
}


@article{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/jv7sr-1cc79,
    authors = "Soloveichik, David and Winfree, Erik",
    title = "The computational power of Benenson automata",
    journal = "Theoretical Computer Science",
    publisher = "Elsevier",
    year = "2005",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20110309-104201537",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/jv7sr-1cc79",
    issn = "0304-3975",
    doi = "10.1016/j.tcs.2005.07.027",
    volume = "344",
    number = "2-3",
    pages = "279-297"
}


@inbook{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/4v9eb-j1b49,
    authors = "Soloveichik, David and Winfree, Erik",
    title = "DNA Computing",
    chapter = "Complexity of Self-assembled Shapes (Extended Abstract)",
    address = "Berlin",
    publisher = "Springer",
    year = "2005",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20200221-095747956",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/4v9eb-j1b49",
    isbn = "978-3-540-26174-2",
    doi = "10.1007/11493785\_30",
    pages = "344-354"
}


@inbook{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/yyhd4-hwj78,
    authors = "Seelig, Georg and Yurke, Bernard and Winfree, Erik",
    title = "DNA Computing",
    chapter = "DNA hybridization catalysts and catalyst circuits",
    address = "Berlin",
    publisher = "Springer",
    year = "2005",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20110309-104201845",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/yyhd4-hwj78",
    isbn = "3-540-26174-5",
    doi = "10.1007/11493785\_29",
    pages = "329-343"
}


@inbook{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/f428a-gx176,
    authors = "Schulman, Rebecca and Winfree, Erik",
    title = "DNA Computing",
    chapter = "Programmable Control of Nucleation for Algorithmic Self-assembly",
    address = "Berlin",
    publisher = "Springer",
    year = "2005",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20200221-152848969",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/f428a-gx176",
    isbn = "978-3-540-26174-2",
    doi = "10.1007/11493785\_28",
    pages = "319-328"
}


@inbook{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/j4yzg-a7236,
    authors = "Schulman, Rebecca and Winfree, Erik",
    title = "Advances in Artificial Life",
    chapter = "Self-replication and evolution of DNA crystals",
    address = "Berlin",
    publisher = "Springer",
    year = "2005",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20110309-104201367",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/j4yzg-a7236",
    isbn = "3-540-28848-1",
    doi = "10.1007/11553090\_74",
    pages = "734-743"
}


@article{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/5884w-g9h71,
    authors = "Rothemund, Paul W. K. and Ekani-Nkodo, Axel and Papadakis, Nick and Kumar, Ashish and Fygenson, Deborah Kuchnir and Winfree, Erik",
    title = "Design and characterization of programmable DNA nanotubes",
    journal = "Journal of the American Chemical Society",
    publisher = "American Chemical Society",
    year = "2004",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20110309-104202496",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/5884w-g9h71",
    issn = "0002-7863",
    doi = "10.1021/ja044319l",
    volume = "126",
    number = "50",
    pages = "16344-16352"
}


@article{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/ceqqb-q4p03,
    authors = "Rothemund, Paul W. K. and Papadakis, Nick and Winfree, Erik",
    title = "Algorithmic Self-Assembly of DNA Sierpinski Triangles",
    journal = "PLoS Biology",
    publisher = "Public Library of Science",
    year = "2004",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:ROTpb04",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/ceqqb-q4p03",
    issn = "1544-9173",
    doi = "10.1371/journal.pbio.0020424",
    volume = "2",
    number = "12",
    pmcid = "PMC534809",
    pages = "2041-2053"
}


@article{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/r694w-8cp52,
    authors = "Dirks, Robert M. and Lin, Milo and Winfree, Erik and Pierce, Niles A.",
    title = "Paradigms for computational nucleic acid design",
    journal = "Nucleic Acids Research",
    publisher = "Oxford University Press",
    year = "2004",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20110309-104203820",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/r694w-8cp52",
    issn = "0305-1048",
    doi = "10.1093/nar/gkh291",
    volume = "32",
    number = "4",
    pmcid = "PMC390280",
    pages = "1392-1403"
}


@article{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/tnqpv-xq834,
    authors = "Kim, Jongmin and Hopfield, John J. and Winfree, Erik",
    title = "Neural network computation by in vitro transcriptional circuits",
    journal = "Advances in Neural Information Processing Systems",
    publisher = "MIT Press",
    year = "2004",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20111024-075732549",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/tnqpv-xq834",
    issn = "1049-5258",
    volume = "17",
    pages = "681-688"
}


@inbook{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/1x89h-zdn73,
    authors = "Schulman, Rebecca and Lee, Shaun and Papadakis, Nick and Winfree, Erik",
    title = "DNA Computing",
    chapter = "One dimensional boundaries for DNA tile self-assembly",
    address = "Berlin",
    publisher = "Springer",
    year = "2004",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20110309-104202835",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/1x89h-zdn73",
    isbn = "3-540-20930-1",
    doi = "10.1007/978-3-540-24628-2\_12",
    pages = "108-125"
}


@inbook{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/jcvj4-7gn26,
    authors = "Winfree, Erik and Bekbolatov, Renat",
    title = "DNA Computing",
    chapter = "Proofreading tile sets: Error correction for algorithmic self-assembly",
    address = "Berlin",
    publisher = "Springer",
    year = "2004",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20110309-104203016",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/jcvj4-7gn26",
    isbn = "3-540-20930-1",
    doi = "10.1007/978-3-540-24628-2\_13",
    pages = "126-144"
}


@inbook{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/fry6p-wqm45,
    authors = "Cook, Matthew and Rothemund, Paul W. K. and Winfree, Erik",
    title = "DNA Computing",
    chapter = "Self-assembled circuit patterns",
    address = "Berlin",
    publisher = "Springer",
    year = "2004",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20110309-104202667",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/fry6p-wqm45",
    isbn = "3-540-20930-1",
    doi = "10.1007/978-3-540-24628-2\_11",
    pages = "91-107"
}


@article{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/b03mj-z4v66,
    authors = "Winfree, Erik",
    title = "DNA Computing by Self-Assembly",
    journal = "The Bridge",
    publisher = "National Academy of Engineering",
    year = "2003",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20111024-084902244",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/b03mj-z4v66",
    issn = "0737-6278",
    volume = "33",
    number = "4",
    pages = "31-38"
}


@other{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/vyj0c-kqm25,
    authors = "Winfree, Erik",
    title = "Simulations of Computing by Self-Assembly",
    publisher = "California Institute of Technology",
    year = "2003",
    url = "https://resolver.caltech.edu/CaltechCSTR:1998.22",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/vyj0c-kqm25",
    doi = "10.7907/Z9TB14X7"
}


@other{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/qvetx-p0t89,
    authors = "Winfree, Erik",
    title = "Whiplash PCR for O(1) Computing",
    publisher = "California Institute of Technology",
    year = "2003",
    url = "https://resolver.caltech.edu/CaltechCSTR:1998.23",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/qvetx-p0t89",
    doi = "10.7907/Z94M92KH"
}


@article{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/1hjmr-84k83,
    authors = "Pierce, Niles A. and Winfree, Erik",
    title = "Protein Design is NP-hard",
    journal = "Protein Engineering",
    publisher = "Oxford University Press",
    year = "2002",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:PIEpeds02.939",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/1hjmr-84k83",
    issn = "0269-2139",
    doi = "10.1093/protein/15.10.779",
    volume = "15",
    number = "10",
    pages = "779-782"
}


@book{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/e6kwb-kqg74,
    authors = "Landweber, Laura F. and Winfree, Erik",
    title = "Evolution as Computation",
    publisher = "Springer",
    year = "2002",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20200512-134206543",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/e6kwb-kqg74",
    isbn = "978-3-642-63081-1",
    doi = "10.1007/978-3-642-55606-7"
}


@inbook{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/fkkm8-xz342,
    authors = "Winfree, Erik and Landweber, Laura F.",
    title = "Evolution as Computation: DIMACS Workshop, Princeton, January 1999",
    chapter = "Introduction: Evolution and Computation: Where Do They Meet?",
    address = "Berlin, Germany",
    publisher = "Springer",
    year = "2002",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20110309-104203989",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/fkkm8-xz342",
    isbn = "978-3-642-63081-1",
    pages = "v-ix"
}


@inbook{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/cvc8r-5v978,
    authors = "Winfree, Erik",
    title = "Unconventional Models of Computation, UMC'2K",
    chapter = "In Vitro Transcriptional Circuits",
    address = "London",
    publisher = "Springer",
    year = "2001",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20200812-123245128",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/cvc8r-5v978",
    isbn = "978-1-85233-415-4",
    doi = "10.1007/978-1-4471-0313-4\_10",
    pages = "121-122"
}


@inbook{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/k0gxw-cqs09,
    authors = "Winfree, Erik and Eng, Tony and Rozenberg, Grzegorz",
    title = "DNA Computing",
    chapter = "String tile models for DNA computing by self-assembly",
    address = "Berlin",
    publisher = "Springer",
    year = "2001",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20111024-092612665",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/k0gxw-cqs09",
    isbn = "978-3-540-42076-7",
    doi = "10.1007/3-540-44992-2\_6",
    pages = "63-88"
}


@article{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/7b16h-n9g10,
    authors = "Winfree, Erik",
    title = "Algorithmic Self-Assembly of DNA: Theoretical Motivations and 2D Assembly Experiments",
    journal = "Journal of Biomolecular Structure and Dynamics",
    publisher = "Adenine Press",
    year = "2000",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20110309-104204682",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/7b16h-n9g10",
    issn = "0739-1102",
    volume = "11",
    number = "2",
    pages = "263-270"
}


@inbook{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/j28t5-3v273,
    authors = "Rothemund, Paul W. K. and Winfree, Erik",
    title = "STOC '00 Proceedings of the thirty-second annual ACM symposium on Theory of computing",
    chapter = "The program-size complexity of self-assembled squares",
    address = "New York, NY",
    publisher = "ACM",
    year = "2000",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20161213-162052032",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/j28t5-3v273",
    isbn = "1-58113-184-4",
    doi = "10.1145/335305.335358",
    pages = "459-468"
}


@article{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/1p8vn-myj41,
    authors = "LaBean, Thomas H. and Yan, Hao and Kopatsch, Jens and Liu, Furong and Winfree, Erik and Reif, John H. and Seeman, Nadrian C.",
    title = "Construction, analysis, ligation, and self-assembly of DNA triple crossover complexes",
    journal = "Journal of the American Chemical Society",
    publisher = "American Chemical Society",
    year = "2000",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20110309-104204822",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/1p8vn-myj41",
    issn = "0002-7863",
    doi = "10.1021/ja993393e",
    volume = "122",
    number = "9",
    pages = "1848-1860"
}


@inbook{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/1dgyt-fev23,
    authors = "Chen, Kevin and Winfree, Erik",
    title = "DNA Based Computers V",
    chapter = "Error Correction in DNA Computing: Misclassification and
 Strand Loss",
    address = "Providence, RI",
    publisher = "American Mathematical Society",
    year = "2000",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20111102-073137217",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/1dgyt-fev23",
    isbn = "9780821820537",
    pages = "49-63"
}


@inbook{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/pqzf3-d3r39,
    authors = "LaBean, Thomas H. and Winfree, Erik and Reif, John H.",
    title = "DNA Based Computers V",
    chapter = "Experimental Progress in Computation by Self-Assembly of DNA Tilings",
    address = "Providence, RI",
    publisher = "American Mathematical Society",
    year = "2000",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20111101-150157119",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/pqzf3-d3r39",
    isbn = "9780821820537",
    pages = "123-40"
}


@article{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/v456j-vk915,
    authors = "Seeman, Nadrian C. and Liu, Furong and Mao, Chengde and Yang, Xiaoping and Wenzler, Lisa A. and Sha, Ruojie and Sun, Weiqiong and Shen, Zhiyong and Li, Xiaojun and Qi, Jing and Zhang, Yuwen and Fu, Tsu-Ju and Chen, Junghuei and Winfree, Erik",
    title = "Two Dimensions and Two States in DNA Nanotechnology",
    journal = "Journal of Biomolecular Structure and Dynamics",
    publisher = "Adenine Press",
    year = "2000",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20111024-091114335",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/v456j-vk915",
    issn = "0739-1102",
    volume = "11",
    number = "S2",
    pages = "253-262"
}


@article{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/k3dhm-a5g05,
    authors = "Adleman, Leonard M. and Rothemund, Paul W. K. and Roweis, Sam and Winfree, Erik",
    title = "On Applying Molecular Computation to the Data Encryption Standard",
    journal = "Journal of Computational Biology",
    publisher = "Mary Ann Liebert, Inc.",
    year = "1999",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20110309-104205166",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/k3dhm-a5g05",
    issn = "1066-5277",
    doi = "10.1089/cmb.1999.6.53",
    volume = "6",
    number = "1",
    pages = "53-63"
}


@article{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/1jc9b-st552,
    authors = "Roweis, Sam and Winfree, Erik",
    title = "On the Reduction of Errors in DNA Computation",
    journal = "Journal of Computational Biology",
    publisher = "Mary Ann Liebert, Inc.",
    year = "1999",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20110309-104205331",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/1jc9b-st552",
    issn = "1066-5277",
    doi = "10.1089/cmb.1999.6.65",
    volume = "6",
    number = "1",
    pages = "65-75"
}


@inbook{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/v13f7-b7211,
    authors = "Winfree, Erik and Yang, Xiaoping and Seeman, Nadrian C.",
    title = "DNA Based Computers II",
    chapter = "Universal Computation via Self-assembly of DNA: Some Theory and Experiments",
    address = "Providence, RI",
    publisher = "American Mathematical Society",
    year = "1999",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20111024-101156919",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/v13f7-b7211",
    isbn = "0821807560",
    pages = "191-213"
}


@article{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/snfgz-51t15,
    authors = "Winfree, Erik and Liu, Furong and Wenzler, Lisa A. and Seeman, Nadrian C.",
    title = "Design and self-assembly of two-dimensional DNA crystals",
    journal = "Nature",
    publisher = "Nature Publishing Group",
    year = "1998",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20110309-104205657",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/snfgz-51t15",
    issn = "0028-0836",
    doi = "10.1038/28998",
    volume = "394",
    number = "6693",
    pages = "539-544"
}


@article{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/jvmmc-dtb97,
    authors = "Roweis, Sam and Winfree, Erik and Burgoyne, Richard and Chelyapov, Nickolas V. and Goodman, Myron F. and Rothemund, Paul W. K. and Adleman, Leonard M.",
    title = "A sticker-based model for DNA computation",
    journal = "Journal of Computational Biology",
    publisher = "Mary Ann Liebert, Inc.",
    year = "1998",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20110309-104205486",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/jvmmc-dtb97",
    issn = "1066-5277",
    doi = "10.1089/cmb.1998.5.615",
    volume = "5",
    number = "4",
    pages = "615-629"
}


@inbook{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/0z4ss-yr489,
    authors = "Winfree, Erik",
    title = "DNA based computers",
    chapter = "Complexity of Restricted and Unrestricted Models of Molecular Computation",
    address = "Providence, RI",
    publisher = "American Mathematical Society",
    year = "1996",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20111024-134249923",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/0z4ss-yr489",
    isbn = "0821805185",
    pages = "187-198"
}


@inbook{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/0a55p-04j89,
    authors = "Winfree, Erik",
    title = "DNA Based Computers",
    chapter = "On the Computational Power of DNA Annealing and Ligation",
    address = "Providence, RI",
    publisher = "American Mathematical Society",
    year = "1996",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20111024-133436564",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/0a55p-04j89",
    isbn = "0821805185",
    pages = "199-221"
}


@article{https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/pqvn9-vdy89,
    authors = "Winfree, A. T. and Winfree, E. M. and Seifert, H.",
    title = "Organizing centers in a cellular excitable medium",
    journal = "Physica D",
    publisher = "Elsevier",
    year = "1985",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20111024-135555583",
    id = "https://authors.library.caltech.eduhttps://authors.library.caltech.edu/records/pqvn9-vdy89",
    issn = "0167-2789",
    doi = "10.1016/0167-2789(85)90138-1",
    volume = "17",
    number = "1",
    pages = "109-115"
}