<h1>Van Valen, David</h1> <h2>Article from <a href="https://authors.library.caltech.edu">CaltechAUTHORS</a></h2> <ul> <li>Laubscher, Emily and Wang, Xuefei (Julie), el al. (2024) <a href="https://authors.library.caltech.edu/records/6xhb5-f2797">Accurate single-molecule spot detection for image-based spatial transcriptomics with weakly supervised deep learning</a>; Cell Systems; Vol. 15; No. 5; 475-482.e6; <a href="https://doi.org/10.1016/j.cels.2024.04.006">10.1016/j.cels.2024.04.006</a></li> <li>Ma, Jun and Xie, Ronald, el al. (2024) <a href="https://authors.library.caltech.edu/records/881ph-47g88">The multimodality cell segmentation challenge: toward universal solutions</a>; Nature Methods; <a href="https://doi.org/10.1038/s41592-024-02233-6">10.1038/s41592-024-02233-6</a></li> <li>Sockell, Alexandra and Wong, Wing, el al. (2023) <a href="https://authors.library.caltech.edu/records/49xd1-6wb05">A microwell platform for high-throughput longitudinal phenotyping and selective retrieval of organoids</a>; Cell Systems; Vol. 14; No. 9; 764-776.e6; <a href="https://doi.org/10.1016/j.cels.2023.08.002">10.1016/j.cels.2023.08.002</a></li> <li>Greenbaum, Shirley and Averbukh, Inna, el al. (2023) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20230725-48996000.4">A spatially resolved timeline of the human maternal–fetal interface</a>; Nature; Vol. 619; No. 7970; 595-605; PMCID PMC10356615; <a href="https://doi.org/10.1038/s41586-023-06298-9">10.1038/s41586-023-06298-9</a></li> <li>Scott, Ryan T. and Sanders, Lauren M., el al. (2023) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20230725-857112000.41">Biomonitoring and precision health in deep space supported by artificial intelligence</a>; Nature Machine Intelligence; Vol. 5; No. 3; 196-207; <a href="https://doi.org/10.1038/s42256-023-00617-5">10.1038/s42256-023-00617-5</a></li> <li>Andrews, Brenda and Chang, Jae-Byum, el al. (2022) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20220804-249913000">Imaging cell biology</a>; Nature Cell Biology; Vol. 24; No. 8; 1180-1185; <a href="https://doi.org/10.1038/s41556-022-00960-6">10.1038/s41556-022-00960-6</a></li> <li>Greenwald, Noah F. and Miller, Geneva, el al. (2022) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20210303-070232817">Whole-cell segmentation of tissue images with human-level performance using large-scale data annotation and deep learning</a>; Nature Biotechnology; Vol. 40; No. 4; 555-565; PMCID PMC9010346; <a href="https://doi.org/10.1038/s41587-021-01094-0">10.1038/s41587-021-01094-0</a></li> <li>McCaffrey, Erin F. and Donato, Michele, el al. (2022) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20220126-630616000">The immunoregulatory landscape of human tuberculosis granulomas</a>; Nature Immunology; Vol. 23; No. 2; 318-329; PMCID PMC8810384; <a href="https://doi.org/10.1038/s41590-021-01121-x">10.1038/s41590-021-01121-x</a></li> <li>Hartmann, Felix J. and Mrdjen, Dunja, el al. (2021) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20200909-073011987">Single-cell metabolic profiling of human cytotoxic T cells</a>; Nature Biotechnology; Vol. 39; No. 2; 186-197; <a href="https://doi.org/10.1038/s41587-020-0651-8">10.1038/s41587-020-0651-8</a></li> <li>Bannon, Dylan and Moen, Erick, el al. (2021) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20190916-101510993">DeepCell Kiosk: scaling deep learning–enabled cellular image analysis with Kubernetes</a>; Nature Methods; Vol. 18; No. 1; 43-45; <a href="https://doi.org/10.1038/s41592-020-01023-0">10.1038/s41592-020-01023-0</a></li> <li>Moen, Erick and Bannon, Dylan, el al. (2019) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20190528-110726386">Deep learning for cellular image analysis</a>; Nature Methods; Vol. 16; No. 12; 1233-1246; <a href="https://doi.org/10.1038/s41592-019-0403-1">10.1038/s41592-019-0403-1</a></li> <li>Greenwald, Noah and Keren, Leeat, el al. (2019) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20191205-101747645">Combining Multiplexed Ion Beam Imaging (MIBI) with Convolutional Neural Networks to accurately segment cells in human tissue</a>; Journal for ImmunoTherapy of Cancer; Vol. 7; No. S1; Art. No. P736; <a href="https://doi.org/10.1186/s40425-019-0764-0">10.1186/s40425-019-0764-0</a></li> <li>Anikeeva, Polina and Cissé, Ibrahim I., el al. (2019) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20191017-144439188">Voices in methods development</a>; Nature Methods; Vol. 16; No. 10; 945-951; PMCID PMC7075469; <a href="https://doi.org/10.1038/s41592-019-0585-6">10.1038/s41592-019-0585-6</a></li> <li>Keren, Leeat and Bosse, Marc, el al. (2018) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20180906-124040516">A Structured Tumor-Immune Microenvironment in Triple Negative Breast Cancer Revealed by Multiplexed Ion Beam Imaging</a>; Cell; Vol. 174; No. 6; 1373-1387; PMCID PMC6132072; <a href="https://doi.org/10.1016/j.cell.2018.08.039">10.1016/j.cell.2018.08.039</a></li> <li>Quach, N. T. and Bodner, K., el al. (2017) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20180321-153149226">A forward genetic screen identifies host factors that influence the lysis-lysogeny decision in phage lambda</a>; Molecular Biology of the Cell; Vol. 28; No. 26; Art. No. P1721; <a href="https://doi.org/10.1091/mbc.E17-10-0618">10.1091/mbc.E17-10-0618</a></li> <li>Lane, Keara and Van Valen, David, el al. (2017) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20180613-110240953">Measuring Signaling and RNA-Seq in the Same Cell Links Gene Expression to Dynamic Patterns of NF-κB Activation</a>; Cell Systems; Vol. 4; No. 4; 458-469.e5; <a href="https://doi.org/10.1016/j.cels.2017.03.010">10.1016/j.cels.2017.03.010</a></li> <li>Van Valen, David A. and Kudo, Takamasa, el al. (2016) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20180613-111613718">Deep Learning Automates the Quantitative Analysis of Individual Cells in Live-Cell Imaging Experiments</a>; PLOS Computational Biology; Vol. 12; No. 11; Art. No. e1005177; PMCID PMC5096676; <a href="https://doi.org/10.1371/journal.pcbi.1005177">10.1371/journal.pcbi.1005177</a></li> <li>Van Valen, David and Wu, David, el al. (2012) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20120716-083157294">A Single-Molecule Hershey-Chase Experiment</a>; Current Biology; Vol. 22; No. 14; 1339-1343; PMCID PMC3462812; <a href="https://doi.org/10.1016/j.cub.2012.05.023">10.1016/j.cub.2012.05.023</a></li> <li>Wu, David and Van Valen, David, el al. (2010) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20100907-101147251">Ion-Dependent Dynamics of DNA Ejections for Bacteriophage λ</a>; Biophysical Journal; Vol. 99; No. 4; 1101-1109; PMCID PMC2920739; <a href="https://doi.org/10.1016/j.bpj.2010.06.024">10.1016/j.bpj.2010.06.024</a></li> <li>Van Valen, David and Haataja, Mikko, el al. (2009) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20090825-145726010">Biochemistry on a Leash: The Roles of Tether Length and Geometry in Signal Integration Proteins</a>; Biophysical Journal; Vol. 96; No. 4; 1275-1292; PMCID PMC2717227; <a href="https://doi.org/10.1016/j.bpj.2008.10.052">10.1016/j.bpj.2008.10.052</a></li> </ul>