@article{https://authors.library.caltech.edu/records/49xd1-6wb05,
    authors = "Sockell, Alexandra and Wong, Wing and Longwell, Scott and Vu, Thy and Karlsson, Kasper and Mokhtari, Daniel and Schaepe, Julia and Lo, Yuan-Hung and Cornelius, Vincent and Kuo, Calvin and Van Valen, David and Curtis, Christina and Fordyce, Polly M.",
    title = "A microwell platform for high-throughput longitudinal phenotyping and selective retrieval of organoids",
    journal = "Cell Systems",
    publisher = "Cell Press",
    year = "2023",
    url = "https://authors.library.caltech.edu/records/49xd1-6wb05",
    id = "https://authors.library.caltech.edu/records/49xd1-6wb05",
    issn = "2405-4712",
    doi = "10.1016/j.cels.2023.08.002",
    volume = "14",
    number = "9",
    pages = "764-776.e6"
}


@article{https://authors.library.caltech.edu/records/tx0a9-hd791,
    authors = "Greenbaum, Shirley and Averbukh, Inna and Soon, Erin and Rizzuto, Gabrielle and Baranski, Alex and Greenwald, Noah F. and Kagel, Adam and Bosse, Marc and Jaswa, Eleni G. and Khair, Zumana and Kwok, Shirley and Warshawsky, Shiri and Piyadasa, Hadeesha and Goldston, Mako and Spence, Angie and Miller, Geneva and Schwartz, Morgan and Graf, Will and Van Valen, David and Winn, Virginia D. and Hollmann, Travis and Keren, Leeat and van de Rijn, Matt and Angelo, Michael",
    title = "A spatially resolved timeline of the human maternal–fetal interface",
    journal = "Nature",
    publisher = "Nature Publishing Group",
    year = "2023",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20230725-48996000.4",
    id = "https://authors.library.caltech.edu/records/tx0a9-hd791",
    issn = "0028-0836",
    doi = "10.1038/s41586-023-06298-9",
    volume = "619",
    number = "7970",
    pmcid = "PMC10356615",
    pages = "595-605"
}


@article{https://authors.library.caltech.edu/records/rk346-hjd93,
    authors = "Scott, Ryan T. and Sanders, Lauren M. and Antonsen, Erik L. and Hastings, Jaden J. A. and Park, Seung-min and Mackintosh, Graham and Reynolds, Robert J. and Hoarfrost, Adrienne L. and Sawyer, Aenor and Greene, Casey S. and Glicksberg, Benjamin S. and Theriot, Corey A. and Berrios, Daniel C. and Miller, Jack and Babdor, Joel and Barker, Richard and Baranzini, Sergio E. and Beheshti, Afshin and Chalk, Stuart and Delgado-Aparicio, Guillermo M. and Haendel, Melissa and Hamid, Arif A. and Heller, Philip and Jamieson, Daniel and Jarvis, Katelyn J. and Kalantari, John and Khezeli, Kia and Komarova, Svetlana V. and Komorowski, Matthieu and Kothiyal, Prachi and Mahabal, Ashish and Manor, Uri and Garcia Martin, Hector and Mason, Christopher E. and Matar, Mona and Mias, George I. and Myers, Jerry G. and Nelson, Charlotte and Oribello, Jonathan and Parsons-Wingerter, Patricia and Prabhu, R. K. and Qutub, Amina Ann and Rask, Jon and Saravia-Butler, Amanda and Saria, Suchi and Singh, Nitin Kumar and Snyder, Michael and Soboczenski, Frank and Soman, Karthik and Van Valen, David and Venkateswaran, Kasthuri and Warren, Liz and Worthey, Liz and Yang, Jason H. and Zitnik, Marinka and Costes, Sylvain V.",
    title = "Biomonitoring and precision health in deep space supported by artificial intelligence",
    journal = "Nature Machine Intelligence",
    publisher = "Nature Publishing Group",
    year = "2023",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20230725-857112000.41",
    id = "https://authors.library.caltech.edu/records/rk346-hjd93",
    issn = "2522-5839",
    doi = "10.1038/s42256-023-00617-5",
    volume = "5",
    number = "3",
    pages = "196-207"
}


@article{https://authors.library.caltech.edu/records/4b4sb-27m96,
    authors = "Andrews, Brenda and Chang, Jae-Byum and Collinson, Lucy and Li, Dong and Lundberg, Emma and Mahamid, Julia and Manley, Suliana and Mhlanga, Musa and Nakano, Akihiko and Schöneberg, Johannes and Van Valen, David and Wu, Ting 'C.-ting' and Zaritsky, Assaf",
    title = "Imaging cell biology",
    journal = "Nature Cell Biology",
    publisher = "Nature Publishing Group",
    year = "2022",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20220804-249913000",
    id = "https://authors.library.caltech.edu/records/4b4sb-27m96",
    issn = "1465-7392",
    doi = "10.1038/s41556-022-00960-6",
    volume = "24",
    number = "8",
    pages = "1180-1185"
}


@article{https://authors.library.caltech.edu/records/9zdr7-69170,
    authors = "Greenwald, Noah F. and Miller, Geneva and Moen, Erick and Kong, Alex and Kagel, Adam and Dougherty, Thomas and Fullaway, Christine Camacho and McIntosh, Brianna J. and Leow, Ke Xuan and Schwartz, Morgan Sarah and Pavelchek, Cole and Cui, Sunny and Camplisson, Isabella and Bar-Tal, Omer and Singh, Jaiveer and Fong, Mara and Chaudhry, Gautam and Abraham, Zion and Moseley, Jackson and Warshawsky, Shiri and Soon, Erin and Greenbaum, Shirley and Risom, Tyler and Hollmann, Travis and Bendall, Sean C. and Keren, Leeat and Graf, Will and Angelo, Michael and Van Valen, David",
    title = "Whole-cell segmentation of tissue images with human-level performance using large-scale data annotation and deep learning",
    journal = "Nature Biotechnology",
    publisher = "Nature Publishing Group",
    year = "2022",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20210303-070232817",
    id = "https://authors.library.caltech.edu/records/9zdr7-69170",
    issn = "1087-0156",
    doi = "10.1038/s41587-021-01094-0",
    volume = "40",
    number = "4",
    pmcid = "PMC9010346",
    pages = "555-565"
}


@article{https://authors.library.caltech.edu/records/a177a-6hp55,
    authors = "McCaffrey, Erin F. and Donato, Michele and Keren, Leeat and Chen, Zhenghao and Delmastro, Alea and Fitzpatrick, Megan B. and Gupta, Sanjana and Greenwald, Noah F. and Baranski, Alex and Graf, William and Kumar, Rashmi and Bosse, Marc and Camacho Fullaway, Christine and Ramdial, Pratista K. and Forgó, Erna and Jojic, Vladimir and Van Valen, David and Mehra, Smriti and Khader, Shabaana A. and Bendall, Sean C. and van de Rijn, Matt and Kalman, Daniel and Kaushal, Deepak and Hunter, Robert L. and Banaei, Niaz and Steyn, Adrie J. C. and Khatri, Purvesh and Angelo, Michael",
    title = "The immunoregulatory landscape of human tuberculosis granulomas",
    journal = "Nature Immunology",
    publisher = "Nature Publishing Group",
    year = "2022",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20220126-630616000",
    id = "https://authors.library.caltech.edu/records/a177a-6hp55",
    issn = "1529-2908",
    doi = "10.1038/s41590-021-01121-x",
    volume = "23",
    number = "2",
    pmcid = "PMC8810384",
    pages = "318-329"
}


@article{https://authors.library.caltech.edu/records/y8sm6-cag77,
    authors = "Hartmann, Felix J. and Mrdjen, Dunja and McCaffrey, Erin and Glass, David R. and Greenwald, Noah F. and Bharadwaj, Anusha and Khair, Zumana and Verberk, Sanne G. S. and Baranski, Alex and Baskar, Reema and Graf, William and Van Valen, David and Van den Bossche, Jan and Angelo, Michael and Bendall, Sean C.",
    title = "Single-cell metabolic profiling of human cytotoxic T cells",
    journal = "Nature Biotechnology",
    publisher = "Nature Publishing Group",
    year = "2021",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20200909-073011987",
    id = "https://authors.library.caltech.edu/records/y8sm6-cag77",
    issn = "1087-0156",
    doi = "10.1038/s41587-020-0651-8",
    volume = "39",
    number = "2",
    pages = "186-197"
}


@article{https://authors.library.caltech.edu/records/4h68q-ep636,
    authors = "Bannon, Dylan and Moen, Erick and Schwartz, Morgan and Borba, Enrico and Kudo, Takamasa and Greenwald, Noah and Vijayakumar, Vibha and Chang, Brian and Pao, Edward and Osterman, Erik and Graf, William and Van Valen, David",
    title = "DeepCell Kiosk: scaling deep learning–enabled cellular image analysis with Kubernetes",
    journal = "Nature Methods",
    publisher = "Nature Publishing Group",
    year = "2021",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20190916-101510993",
    id = "https://authors.library.caltech.edu/records/4h68q-ep636",
    issn = "1548-7091",
    doi = "10.1038/s41592-020-01023-0",
    volume = "18",
    number = "1",
    pages = "43-45"
}


@article{https://authors.library.caltech.edu/records/eq4by-p3630,
    authors = "Moen, Erick and Bannon, Dylan and Kudo, Takamasa and Graf, William and Covert, Markus and Van Valen, David",
    title = "Deep learning for cellular image analysis",
    journal = "Nature Methods",
    publisher = "Nature Publishing Group",
    year = "2019",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20190528-110726386",
    id = "https://authors.library.caltech.edu/records/eq4by-p3630",
    issn = "1548-7091",
    doi = "10.1038/s41592-019-0403-1",
    volume = "16",
    number = "12",
    pages = "1233-1246"
}


@article{https://authors.library.caltech.edu/records/7shtg-pxr80,
    authors = "Greenwald, Noah and Keren, Leeat and Greenbaum, Shirley and Fong, Mara and Chaudhry, Gautam and Abraham, Zion and Moseley, Jackson and Van Valen, David and Angelo, Michael",
    title = "Combining Multiplexed Ion Beam Imaging (MIBI) with Convolutional Neural Networks to accurately segment cells in human tissue",
    journal = "Journal for ImmunoTherapy of Cancer",
    publisher = "BioMed Central",
    year = "2019",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20191205-101747645",
    id = "https://authors.library.caltech.edu/records/7shtg-pxr80",
    issn = "2051-1426",
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@article{https://authors.library.caltech.edu/records/zvefc-wps44,
    authors = "Anikeeva, Polina and Cissé, Ibrahim I. and Jensen, Grant Jay and Van Valen, David and Zernicka-Goetz, Magdalena",
    title = "Voices in methods development",
    journal = "Nature Methods",
    publisher = "Nature Publishing Group",
    year = "2019",
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    id = "https://authors.library.caltech.edu/records/zvefc-wps44",
    issn = "1548-7091",
    doi = "10.1038/s41592-019-0585-6",
    volume = "16",
    number = "10",
    pmcid = "PMC7075469",
    pages = "945-951"
}


@article{https://authors.library.caltech.edu/records/qkvm5-dak96,
    authors = "Keren, Leeat and Bosse, Marc and Marquez, Diana and Angoshtari, Roshan and Jain, Samir and Varma, Sushama and Yang, Soo-Ryum and Kurian, Allison and Van Valen, David and West, Robert and Bendall, Sean C. and Angelo, Michael",
    title = "A Structured Tumor-Immune Microenvironment in Triple Negative Breast Cancer Revealed by Multiplexed Ion Beam Imaging",
    journal = "Cell",
    publisher = "Cell Press",
    year = "2018",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20180906-124040516",
    id = "https://authors.library.caltech.edu/records/qkvm5-dak96",
    issn = "0092-8674",
    doi = "10.1016/j.cell.2018.08.039",
    volume = "174",
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}


@article{https://authors.library.caltech.edu/records/s7s64-hha49,
    authors = "Quach, N. T. and Bodner, K. and Miguel, A. and Tanouchi, Y. and Silvis, M. R. and Gross, C. A. and Huang, K. C. and Covert, M. W. and Van Valen, D. A.",
    title = "A forward genetic screen identifies host factors that influence the lysis-lysogeny decision in phage lambda",
    journal = "Molecular Biology of the Cell",
    publisher = "American Society for Cell Biology",
    year = "2017",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20180321-153149226",
    id = "https://authors.library.caltech.edu/records/s7s64-hha49",
    issn = "1059-1524",
    doi = "10.1091/mbc.E17-10-0618",
    volume = "28",
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}


@article{https://authors.library.caltech.edu/records/fyh1y-6zs57,
    authors = "Lane, Keara and Van Valen, David and DeFelice, Mialy M. and Macklin, Derek N. and Kudo, Takamasa and Jaimovich, Ariel and Carr, Ambrose and Meyer, Tobias and Pe'er, Dana and Boutet, Stéphane C. and Covert, Markus W.",
    title = "Measuring Signaling and RNA-Seq in the Same Cell Links Gene Expression to Dynamic Patterns of NF-κB Activation",
    journal = "Cell Systems",
    publisher = "Elsevier",
    year = "2017",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20180613-110240953",
    id = "https://authors.library.caltech.edu/records/fyh1y-6zs57",
    issn = "2405-4712",
    doi = "10.1016/j.cels.2017.03.010",
    volume = "4",
    number = "4",
    pages = "458-469.e5"
}


@article{https://authors.library.caltech.edu/records/erehe-a7x25,
    authors = "Van Valen, David A. and Kudo, Takamasa and Lane, Keara M. and Macklin, Derek N. and Quach, Nicolas T. and DeFelice, Mialy M. and Maayan, Inbal and Tanouchi, Yu and Ashley, Euan A. and Covert, Markus W.",
    title = "Deep Learning Automates the Quantitative Analysis of Individual Cells in Live-Cell Imaging Experiments",
    journal = "PLOS Computational Biology",
    publisher = "Public Library of Science",
    year = "2016",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20180613-111613718",
    id = "https://authors.library.caltech.edu/records/erehe-a7x25",
    issn = "1553-7358",
    doi = "10.1371/journal.pcbi.1005177",
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    number = "11",
    pmcid = "PMC5096676",
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}


@article{https://authors.library.caltech.edu/records/nbt4d-ajs72,
    authors = "Van Valen, David and Wu, David and Chen, Yi-Ju and Tuson, Hannah and Wiggins, Paul and Phillips, Rob",
    title = "A Single-Molecule Hershey-Chase Experiment",
    journal = "Current Biology",
    publisher = "Cell Press",
    year = "2012",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20120716-083157294",
    id = "https://authors.library.caltech.edu/records/nbt4d-ajs72",
    issn = "0960-9822",
    doi = "10.1016/j.cub.2012.05.023",
    volume = "22",
    number = "14",
    pmcid = "PMC3462812",
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}


@article{https://authors.library.caltech.edu/records/qe7vg-w2207,
    authors = "Wu, David and Van Valen, David and Hu, Qicong and Phillips, Rob",
    title = "Ion-Dependent Dynamics of DNA Ejections for Bacteriophage λ",
    journal = "Biophysical Journal",
    publisher = "Biophysical Society",
    year = "2010",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20100907-101147251",
    id = "https://authors.library.caltech.edu/records/qe7vg-w2207",
    issn = "0006-3495",
    doi = "10.1016/j.bpj.2010.06.024",
    volume = "99",
    number = "4",
    pmcid = "PMC2920739",
    pages = "1101-1109"
}


@article{https://authors.library.caltech.edu/records/ejfb3-65p30,
    authors = "Van Valen, David and Haataja, Mikko and Phillips, Rob",
    title = "Biochemistry on a Leash: The Roles of Tether Length and Geometry in Signal Integration Proteins",
    journal = "Biophysical Journal",
    publisher = "Biophysical Society",
    year = "2009",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20090825-145726010",
    id = "https://authors.library.caltech.edu/records/ejfb3-65p30",
    issn = "0006-3495",
    doi = "10.1016/j.bpj.2008.10.052",
    volume = "96",
    number = "4",
    pmcid = "PMC2717227",
    pages = "1275-1292"
}