Thomson, Matt
- Gornet, James A. and Thomson, Matt (2024) Automated construction of cognitive maps with predictive coding; bioRxiv; 2023.09.18.558369; 10.1101/2023.09.18.558369
- Subramanian, Arjuna M. and Thomson, Matt (2023) Unexplored regions of the protein sequence-structure map revealed at scale by a library of foldtuned language models; PMCID PMC10769378; 10.1101/2023.12.22.573145
- Polonsky, Michal and Gerhardt, Louisa M. S., el al. (2023) Spatial transcriptomics defines injury-specific microenvironments in the adult mouse kidney and novel cellular interactions in regeneration and disease; bioRxiv; 10.1101/2023.11.22.568217
- Martinez, Zachary A and Murray, Richard M., el al. (2023) TRILL: Orchestrating Modular Deep-Learning Workflows for Democratized, Scalable Protein Analysis and Engineering; bioRxiv; 2023.10.24.563881; PMCID PMC10659302; 10.1101/2023.10.24.563881
- Srivastava, Vasudha and Hu, Jennifer L., el al. (2023) Configurational entropy is an intrinsic driver of tissue structural heterogeneity; PMCID PMC10327153; 10.1101/2023.07.01.546933
- Jiang, Jialong and Chen, Sisi, el al. (2023) D-SPIN constructs gene regulatory network models from multiplexed scRNA-seq data revealing organizing principles of cellular perturbation response; PMCID PMC10153191; 10.1101/2023.04.19.537364
- Santorelli, Marco and Bhamidipati, Pranav S., el al. (2022) Control of spatio-temporal patterning via cell density in a multicellular synthetic gene circuit; 10.1101/2022.10.04.510900
- Winnett, Alexander Viloria and Akana, Reid, el al. (2022) Extreme differences in SARS-CoV-2 viral loads among respiratory specimen types during presumed pre-infectious and infectious periods; 10.1101/2022.07.13.22277113
- Winnett, Alexander Viloria and Akana, Reid, el al. (2022) Why Daily SARS-CoV-2 Nasal Rapid Antigen Testing Poorly Detects Infected and Infectious Individuals; 10.1101/2022.07.13.22277513
- Abdel-Haq, Reem and Schlachetzki, Johannes C. M., el al. (2022) A prebiotic diet modulates microglial states and motor deficits in α-synuclein overexpressing mice; 10.1101/2022.06.27.497828
- Raghavan, Guruprasad and Thomson, Matt (2022) Engineering flexible machine learning systems by traversing functionally invariant paths in weight space; 10.48550/arXiv.2205.00334
- Pool, Allan-Hermann and Poldsam, Helen, el al. (2022) Enhanced recovery of single-cell RNA-sequencing reads for missing gene expression data; 10.1101/2022.04.26.489449
- Banks, Rachel A. and Galstyan, Vahe, el al. (2021) Motor processivity and speed determine structure and dynamics of microtubule-motor assemblies; 10.1101/2021.10.22.465381
- Santorelli, Marco and Bhamidipati, Pranav, el al. (2021) Cell density controls signal propagation waves in a multicellular synthetic gene circuit; 10.48550/arXiv.2107.08116
- Wang, Zitong Jerry and Thomson, Matt (2021) Signaling receptor localization maximizes cellular information acquisition in spatially-structured, natural environments; 10.48550/arXiv.2107.00806
- Chen, Xiaoqiao and Chen, Sisi, el al. (2021) Active feature selection discovers minimal gene sets for classifying cell types and disease states with single-cell mRNA-seq data; 10.1101/2021.06.15.448478
- Qu, Zijie and Jiang, Jialong, el al. (2021) Programming Boundary Deformation Patterns in Active Networks; 10.48550/arXiv.2101.08464
- Dobreva, Tatyana and Brown, David, el al. (2020) Enabling out-of-clinic human immunity studies via single-cell profiling of capillary blood; 10.1101/2020.07.25.210468
- Chen, Sisi and Park, Jong H., el al. (2019) Designing signaling environments to steer transcriptional diversity in neural progenitor cell populations
- Jiang, Jialong and Sivak, David A., el al. (2019) Active Learning of Spin Network Models; 10.48550/arXiv.1903.10474
- Murrow, Lyndsay M. and Weber, Robert J., el al. (2018) Changes in epithelial proportions and transcriptional state underlie major premenopausal breast cancer risks; 10.1101/430611