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    doi = "10.1038/s41586-019-1447-1",
    volume = "572",
    pmcid = "PMC6719720"
}


@other{https://resolver.caltech.edu/CaltechAUTHORS:20190520-085022351,
    title = "Active Learning of Spin Network Models",
    year = "2019",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20190520-085022351",
    id = "record",
    doi = "10.48550/arXiv.1903.10474"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20180910-090801725,
    title = "Integrated measurement of intracellular proteins and transcripts in single cells",
    journal = "Lab on a Chip",
    year = "2018",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20180910-090801725",
    id = "record",
    issn = "1473-0197",
    doi = "10.1039/c8lc00639c",
    volume = "18",
    pmcid = "PMC6752714"
}


@other{https://resolver.caltech.edu/CaltechAUTHORS:20200121-074722672,
    title = "Changes in epithelial proportions and transcriptional state underlie major premenopausal breast cancer risks",
    year = "2018",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20200121-074722672",
    id = "record",
    doi = "10.1101/430611"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20180212-080247041,
    title = "Diffusion as a Ruler: Modeling Kinesin Diffusion as a Length Sensor for Intraflagellar Transport",
    journal = "Biophysical Journal",
    year = "2018",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20180212-080247041",
    id = "record",
    issn = "0006-3495",
    doi = "10.1016/j.bpj.2017.11.3784",
    volume = "114",
    pmcid = "PMC5985012"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20180523-145718338,
    title = "Diffusion as a Ruler: Modeling Kinesin Diffusion as a Lenth Sensor for Intraflagellar Transport",
    journal = "Biophysical Journal",
    year = "2018",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20180523-145718338",
    id = "record",
    issn = "0006-3495",
    doi = "10.1016/j.bpj.2017.11.1877",
    volume = "114"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20180202-090924087,
    title = "Adult Neurogenesis Is Sustained by Symmetric Self-Renewal and Differentiation",
    journal = "Cell Stem Cell",
    year = "2018",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20180202-090924087",
    id = "record",
    issn = "1934-5909",
    doi = "10.1016/j.stem.2018.01.003",
    volume = "22",
    pmcid = "PMC5802882"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20180321-144810107,
    title = "Diffusion as a ruler: Modeling kinesin diffusion as a length sensor for intraflagellar transport",
    journal = "Molecular Biology of the Cell",
    year = "2017",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20180321-144810107",
    id = "record",
    issn = "1059-1524",
    doi = "10.1091/mbc.E17-10-0618",
    volume = "28"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20170612-083933304,
    title = "Transient Thresholding: A Mechanism Enabling Noncooperative Transcriptional Circuitry to Form a Switch",
    journal = "Biophysical Journal",
    year = "2017",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20170612-083933304",
    id = "record",
    issn = "0006-3495",
    doi = "10.1016/j.bpj.2017.05.002",
    volume = "112",
    pmcid = "PMC5474885"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20161121-084221387,
    title = {Signaling Boundary Conditions Drive Self-Organization of Human "Gastruloids"},
    journal = "Developmental Cell",
    year = "2016",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20161121-084221387",
    id = "record",
    issn = "1534-5807",
    doi = "10.1016/j.devcel.2016.10.016",
    volume = "39"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20170203-145417665,
    title = "Low Dimensionality in Gene Expression Data Enables the Accurate Extraction of Transcriptional Programs from Shallow Sequencing",
    journal = "Cell Systems",
    year = "2016",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20170203-145417665",
    id = "record",
    issn = "2405-4712",
    doi = "10.1016/j.cels.2016.04.001",
    volume = "2",
    pmcid = "PMC4856162"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20170217-152208931,
    title = "SOX2O-GlcNAcylation alters its protein-protein interactions and genomic occupancy to modulate gene expression in pluripotent cells",
    journal = "eLife",
    year = "2016",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20170217-152208931",
    id = "record",
    issn = "2050-084X",
    doi = "10.7554/eLife.10647",
    volume = "5",
    pmcid = "PMC4841768"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20170217-155108197,
    title = "Engineering Customized Cell Sensing and Response Behaviors Using Synthetic Notch Receptors",
    journal = "Cell",
    year = "2016",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20170217-155108197",
    id = "record",
    issn = "0092-8674",
    doi = "10.1016/j.cell.2016.01.012",
    volume = "164",
    pmcid = "PMC4752866"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20170206-125245319,
    title = "Transcription Factor Competition Allows Embryonic Stem Cells to Distinguish Authentic Signals from Noise",
    journal = "Cell Systems",
    year = "2015",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20170206-125245319",
    id = "record",
    issn = "2405-4712",
    doi = "10.1016/j.cels.2015.08.001",
    volume = "1",
    pmcid = "PMC4576702"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20170217-155108581,
    title = "Transcriptome-wide Analysis Reveals Hallmarks of Human Intestine Development and Maturation In Vitro and In Vivo",
    journal = "Stem Cell Reports",
    year = "2015",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20170217-155108581",
    id = "record",
    issn = "2213-6711",
    doi = "10.1016/j.stemcr.2015.04.010",
    volume = "4",
    pmcid = "PMC4471827"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20170206-125245656,
    title = "A strategy for tissue self-organization that is robust to cellular heterogeneity and plasticity",
    journal = "Proceedings of the National Academy of Sciences of the United States of America",
    year = "2015",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20170206-125245656",
    id = "record",
    issn = "0027-8424",
    doi = "10.1073/pnas.1410776112",
    volume = "112",
    pmcid = "PMC4343104"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20170217-150644261,
    title = "Environmental Statistics and Optimal Regulation",
    journal = "Biophysical Journal",
    year = "2015",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20170217-150644261",
    id = "record",
    issn = "0006-3495",
    doi = "10.1016/j.bpj.2014.11.1999",
    volume = "108"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20170206-153034371,
    title = "Environmental Statistics and Optimal Regulation",
    journal = "PLOS Computational Biology",
    year = "2014",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20170206-153034371",
    id = "record",
    issn = "1553-7358",
    doi = "10.1371/journal.pcbi.1003826",
    volume = "10",
    pmcid = "PMC4177669"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20170127-224411366,
    title = "Pluripotency Factors in Embryonic Stem Cells Regulate Differentiation into Germ Layers",
    journal = "Cell",
    year = "2011",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20170127-224411366",
    id = "record",
    issn = "0092-8674",
    doi = "10.1016/j.cell.2011.05.017",
    volume = "145"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20170206-154848264,
    title = "The rational parameterisation theorem for multisite post-translational modification systems",
    journal = "Journal of Theoretical Biology",
    year = "2009",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20170206-154848264",
    id = "record",
    issn = "0022-5193",
    doi = "10.1016/j.jtbi.2009.09.003",
    volume = "261",
    pmcid = "PMC2800989"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20170206-154848538,
    title = "Unlimited multistability in multisite phosphorylation systems",
    journal = "Nature",
    year = "2009",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20170206-154848538",
    id = "record",
    issn = "0028-0836",
    doi = "10.1038/nature08102",
    volume = "460",
    pmcid = "PMC2859978"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20170206-154848804,
    title = "Programming with models: modularity and abstraction provide powerful capabilities for systems biology",
    journal = "Journal of the Royal Society Interface",
    year = "2009",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20170206-154848804",
    id = "record",
    issn = "1742-5689",
    doi = "10.1098/rsif.2008.0205",
    volume = "6",
    pmcid = "PMC2659579"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20170217-132836548,
    title = "An embryonic stem cell–like gene expression signature in poorly differentiated aggressive human tumors",
    journal = "Nature Genetics",
    year = "2008",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20170217-132836548",
    id = "record",
    issn = "1061-4036",
    doi = "10.1038/ng.127",
    volume = "40",
    pmcid = "PMC2912221"
}