<h1>Rothenberg, Ellen</h1>
<h2>Article from <a href="https://authors.library.caltech.edu">CaltechAUTHORS</a></h2>
<ul>
<li>Shin, Boyoung and Chang, Samantha J., el al. (2024) <a href="https://authors.library.caltech.edu/records/8g24g-3gt04">Transcriptional network dynamics in early T cell development</a>; Journal of Experimental Medicine; Vol. 221; No. 10; e20230893; <a href="https://doi.org/10.1084/jem.20230893">10.1084/jem.20230893</a></li>
<li>Andersson, Emil and Rothenberg, Ellen V., el al. (2024) <a href="https://authors.library.caltech.edu/records/m8tmr-4v534">T-cell commitment inheritance—an agent-based multi-scale model</a>; npj Systems Biology and Applications; Vol. 10; 40; PMCID PMC11024127; <a href="https://doi.org/10.1038/s41540-024-00368-y">10.1038/s41540-024-00368-y</a></li>
<li>Schulte, Samuel J. and Shin, Boyoung, el al. (2024) <a href="https://authors.library.caltech.edu/records/5tqf9-jve59">Multiplex, Quantitative, High-Resolution Imaging of Protein:Protein Complexes via Hybridization Chain Reaction</a>; ACS Chemical Biology; Vol. 19; No. 2; 280-288; PMCID PMC10877569; <a href="https://doi.org/10.1021/acschembio.3c00431">10.1021/acschembio.3c00431</a></li>
<li>Spolski, Rosanne and Li, Peng, el al. (2023) <a href="https://authors.library.caltech.edu/records/ndath-7vx81">Distinct use of super-enhancer elements controls cell type–specific CD25 transcription and function</a>; Science Immunology; Vol. 8; No. 89; eadi8217; <a href="https://doi.org/10.1126/sciimmunol.adi8217">10.1126/sciimmunol.adi8217</a></li>
<li>Shin, Boyoung and Zhou, Wen, el al. (2023) <a href="https://authors.library.caltech.edu/records/7x7jk-49y92">Runx factors launch T cell and innate lymphoid programs via direct and gene network-based mechanisms</a>; Nature Immunology; Vol. 24; No. 9; 1458-1472; PMCID PMC10673614; <a href="https://doi.org/10.1038/s41590-023-01585-z">10.1038/s41590-023-01585-z</a></li>
<li>MacNabb, Brendan W. and Rothenberg, Ellen V. (2023) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20230227-88449200.51">Speed and navigation control of thymocyte development by the fetal T-cell gene regulatory network</a>; Immunological Reviews; Vol. 315; No. 1; 171-196; PMCID PMC10771342; <a href="https://doi.org/10.1111/imr.13190">10.1111/imr.13190</a></li>
<li>Kagan, Jonathan C. and Rothenberg, Ellen V., el al. (2023) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20230612-735539000.37">Cold Spring Harbor Laboratory 2022: emerging insights and viewpoints in immunology</a>; Trends in Immunology; Vol. 44; No. 4; 248-255; <a href="https://doi.org/10.1016/j.it.2023.02.003">10.1016/j.it.2023.02.003</a></li>
<li>Shin, Boyoung and Rothenberg, Ellen V. (2023) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20230308-468102500.15">Multi-modular structure of the gene regulatory network for specification and commitment of murine T cells</a>; Frontiers in Immunology; Vol. 14; Art. No. 1108368; PMCID PMC9928580; <a href="https://doi.org/10.3389/fimmu.2023.1108368">10.3389/fimmu.2023.1108368</a></li>
<li>Rothenberg, Ellen V. (2022) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20230725-705920000.10">Transcription factors specifically control change</a>; Genes and Development; Vol. 36; No. 21-24; 1097-1099; PMCID PMC9851400; <a href="https://doi.org/10.1101/gad.350308.122">10.1101/gad.350308.122</a></li>
<li>Rothenberg, Ellen V. (2022) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20221104-613497100.22">The Heart of the Machine: Construction of T Cell Identity, Made Accessible</a>; Journal of Immunology; Vol. 209; No. 7; 1235-1236; <a href="https://doi.org/10.4049/jimmunol.2200264">10.4049/jimmunol.2200264</a></li>
<li>Zhou, Wen and Gao, Fan, el al. (2022) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20220523-164956000">Single-cell deletion analyses show control of pro–T cell developmental speed and pathways by Tcf7, Spi1, Gata3, Bcl11a, Erg, and Bcl11b</a>; Science Immunology; Vol. 7; No. 71; eabm1920; PMCID PMC9273332; <a href="https://doi.org/10.1126/sciimmunol.abm1920">10.1126/sciimmunol.abm1920</a></li>
<li>Rothenberg, Ellen V. (2021) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20210408-133238795">Logic and lineage impacts on functional transcription factor deployment for T-cell fate commitment</a>; Biophysical Journal; Vol. 120; No. 19; 4162-4181; <a href="https://doi.org/10.1016/j.bpj.2021.04.002">10.1016/j.bpj.2021.04.002</a></li>
<li>Hosokawa, Hiroyuki and Koizumi, Maria, el al. (2021) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20210701-152448019">Stage-specific action of Runx1 and GATA3 controls silencing of PU.1 expression in mouse pro-T cells</a>; Journal of Experimental Medicine; Vol. 218; No. 8; Art. No. e20202648; PMCID PMC8241539; <a href="https://doi.org/10.1084/jem.20202648">10.1084/jem.20202648</a></li>
<li>Sidwell, Tom and Rothenberg, Ellen V. (2021) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20210517-094542881">Epigenetic Dynamics in the Function of T-Lineage Regulatory Factor Bcl11b</a>; Frontiers in Immunology; Vol. 12; Art. No. 669498; PMCID PMC8079813; <a href="https://doi.org/10.3389/fimmu.2021.669498">10.3389/fimmu.2021.669498</a></li>
<li>Rothenberg, Ellen V. (2021) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20210115-132721294">Single-cell insights into the hematopoietic generation of T-lymphocyte precursors in mouse and human</a>; Experimental Hematology; Vol. 95; 1-12; PMCID PMC8018899; <a href="https://doi.org/10.1016/j.exphem.2020.12.005">10.1016/j.exphem.2020.12.005</a></li>
<li>Hosokawa, Hiroyuki and Rothenberg, Ellen V. (2021) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20200805-161737516">How transcription factors drive choice of the T cell fate</a>; Nature Reviews. Immunology; Vol. 21; No. 3; 162-176; <a href="https://doi.org/10.1038/s41577-020-00426-6">10.1038/s41577-020-00426-6</a></li>
<li>Shin, Boyoung and Hosokawa, Hiroyuki, el al. (2021) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20210122-095153963">Runx1 and Runx3 drive progenitor to T-lineage transcriptome conversion in mouse T cell commitment via dynamic genomic site switching</a>; Proceedings of the National Academy of Sciences of the United States of America; Vol. 118; No. 4; Art. No. e2019655118; PMCID PMC7848575; <a href="https://doi.org/10.1073/pnas.2019655118">10.1073/pnas.2019655118</a></li>
<li>Olariu, Victor and Yui, Mary A., el al. (2021) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20190612-072821066">Multi-scale Dynamical Modeling of T Cell Development from an Early Thymic Progenitor State to Lineage Commitment</a>; Cell Reports; Vol. 34; No. 2; Art. No. 108622; PMCID PMC7943435; <a href="https://doi.org/10.1016/j.celrep.2020.108622">10.1016/j.celrep.2020.108622</a></li>
<li>Rothenberg, Ellen V. and Göttgens, Berthold (2021) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20201202-080830637">How haematopoiesis research became a fertile ground for regulatory network biology as pioneered by Eric Davidson</a>; Current Opinion in Hematology; Vol. 28; No. 1; 1-10; PMCID PMC7755131; <a href="https://doi.org/10.1097/moh.0000000000000628">10.1097/moh.0000000000000628</a></li>
<li>Romero-Wolf, Maile and Shin, Boyoung, el al. (2020) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20200805-124144469">Notch2 complements Notch1 to mediate inductive signaling that initiates early T cell development</a>; Journal of Cell Biology; Vol. 219; No. 10; Art. No. e202005093; PMCID PMC7659720; <a href="https://doi.org/10.1083/jcb.202005093">10.1083/jcb.202005093</a></li>
<li>Wang, Xun and Rothenberg, Ellen V. (2020) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20200909-142850654">Illuminating the core of adaptive immunity—how the regulatory genome controls Rag chromatin dynamics</a>; Science Immunology; Vol. 5; No. 51; Art. No. eabd6427; <a href="https://doi.org/10.1126/sciimmunol.abd6427">10.1126/sciimmunol.abd6427</a></li>
<li>Spolski, Rosanne and Li, Peng, el al. (2020) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20210122-150022129">Functional dissection of the Il2ra superenhancer reveals developmentally regulated and cell type specific elements</a>; Journal of Immunology; Vol. 204; No. S1; Art. No. 78.16</li>
<li>Hosokawa, Hiroyuki and Romero-Wolf, Maile, el al. (2020) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20191105-110746748">Cell type–specific actions of Bcl11b in early T-lineage and group 2 innate lymphoid cells</a>; Journal of Experimental Medicine; Vol. 217; No. 1; Art. No. e20190972; PMCID PMC7037248; <a href="https://doi.org/10.1084/jem.20190972">10.1084/jem.20190972</a></li>
<li>Rothenberg, Ellen V. (2019) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20191106-101546926">Dynamic control of the T-cell specification gene regulatory network</a>; Current Opinion in Systems Biology; Vol. 18; 62-76; PMCID PMC7015151; <a href="https://doi.org/10.1016/j.coisb.2019.10.012">10.1016/j.coisb.2019.10.012</a></li>
<li>Zhou, Wen and Rothenberg, Ellen V. (2019) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20191120-074200678">Building a Human Thymus: A Pointillist View</a>; Immunity; Vol. 51; No. 5; 788-790; <a href="https://doi.org/10.1016/j.immuni.2019.10.003">10.1016/j.immuni.2019.10.003</a></li>
<li>Zhou, Wen and Yui, Mary A., el al. (2019) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20191016-124948167">Single-Cell Analysis Reveals Regulatory Gene Expression Dynamics Leading to Lineage Commitment in Early T Cell Development</a>; Cell Systems; Vol. 9; No. 4; 321-337; PMCID PMC6932747; <a href="https://doi.org/10.1016/j.cels.2019.09.008">10.1016/j.cels.2019.09.008</a></li>
<li>Sashital, Dipali and Blanpain, Cedric, el al. (2019) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20191003-090223396">Advice from Cell Press Reviewers</a>; Cell; Vol. 179; No. 1; 40-45; <a href="https://doi.org/10.1016/j.cell.2019.08.044">10.1016/j.cell.2019.08.044</a></li>
<li>Rothenberg, Ellen V. (2019) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20190926-101246969">Programming for T-lymphocyte fates: modularity and mechanisms</a>; Genes and Development; Vol. 33; No. 17-18; 1117-1135; PMCID PMC6719619; <a href="https://doi.org/10.1101/gad.327163.119">10.1101/gad.327163.119</a></li>
<li>Rothenberg, Ellen V. (2019) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20190513-081636901">Causal Gene Regulatory Network Modeling and Genomics: Second-Generation Challenges</a>; Journal of Computational Biology; Vol. 26; No. 7; 703-718; PMCID PMC6661971; <a href="https://doi.org/10.1089/cmb.2019.0098">10.1089/cmb.2019.0098</a></li>
<li>Rothenberg, Ellen V. (2019) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20190122-161308867">Encounters across networks: Windows into principles of genomic regulation</a>; Marine Genomics; Vol. 44; 3-12; PMCID PMC6431589; <a href="https://doi.org/10.1016/j.margen.2019.01.003">10.1016/j.margen.2019.01.003</a></li>
<li>Rothenberg, Ellen V. and Hosokawa, Hiroyuki, el al. (2019) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20190228-144651277">Mechanisms of Action of Hematopoietic Transcription Factor PU.1 in Initiation of T-Cell Development</a>; Frontiers in Immunology; Vol. 10; Art. No. 228; PMCID PMC6391351; <a href="https://doi.org/10.3389/fimmu.2019.00228">10.3389/fimmu.2019.00228</a></li>
<li>Hosokawa, Hiroyuki and Romero-Wolf, Maile, el al. (2018) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20180830-074139017">Bcl11b sets pro-T cell fate by site-specific cofactor recruitment and by repressing Id2 and Zbtb16</a>; Nature Immunology; Vol. 19; No. 12; 1427-1440; PMCID PMC6240390; <a href="https://doi.org/10.1038/s41590-018-0238-4">10.1038/s41590-018-0238-4</a></li>
<li>Ng, Kenneth K. N. and Yui, Mary A., el al. (2018) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20181030-143317624">A stochastic epigenetic switch controls the dynamics of T-cell lineage commitment</a>; eLife; Vol. 7; Art. No. e37851; PMCID PMC6245732; <a href="https://doi.org/10.7554/eLife.37851">10.7554/eLife.37851</a></li>
<li>Ungerbäck, Jonas and Hosokawa, Hiroyuki, el al. (2018) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20180910-100610307">Pioneering, chromatin remodeling, and epigenetic constraint in early T-cell gene regulation by SPI1 (PU.1)</a>; Genome Research; Vol. 28; No. 10; 1508-1519; PMCID PMC6169891; <a href="https://doi.org/10.1101/gr.231423.117">10.1101/gr.231423.117</a></li>
<li>Hosokawa, Hiroyuki and Ungerbäck, Jonas, el al. (2018) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20180621-101905456">Transcription Factor PU.1 Represses and Activates Gene Expression in Early T Cells by Redirecting Partner Transcription Factor Binding</a>; Immunity; Vol. 48; No. 6; 1119-1134; PMCID PMC6063530; <a href="https://doi.org/10.1016/j.immuni.2018.04.024">10.1016/j.immuni.2018.04.024</a></li>
<li>Hosokawa, Hiroyuki and Rothenberg, Ellen V. (2018) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20170724-090958953">Cytokines, Transcription Factors, and the Initiation of T-Cell Development</a>; Cold Spring Harbor Perspectives in Biology; Vol. 10; No. 5; 1-19; PMCID PMC5876153; <a href="https://doi.org/10.1101/cshperspect.a028621">10.1101/cshperspect.a028621</a></li>
<li>Hu, Gangqing and Cui, Kairong, el al. (2018) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20180223-094424466">Transformation of Accessible Chromatin and 3D Nucleome Underlies Lineage Commitment of Early T Cells</a>; Immunity; Vol. 48; No. 2; 227-242; PMCID PMC5847274; <a href="https://doi.org/10.1016/j.immuni.2018.01.013">10.1016/j.immuni.2018.01.013</a></li>
<li>Rothenberg, Ellen V. (2017) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20171017-101505757">Fitting structure to function in gene regulatory networks</a>; History and Philosophy of the Life Sciences; Vol. 39; No. 4; Art. No. 37; PMCID PMC5660880; <a href="https://doi.org/10.1007/s40656-017-0164-z">10.1007/s40656-017-0164-z</a></li>
<li>He, Zhiheng and Ma, Jian, el al. (2017) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20170918-100744257">A two-amino-acid substitution in the transcription factor RORγt disrupts its function in T_H17 differentiation but not in thymocyte development</a>; Nature Immunology; Vol. 18; No. 10; 1128-1138; PMCID PMC5678981; <a href="https://doi.org/10.1038/ni.3832">10.1038/ni.3832</a></li>
<li>Longabaugh, William J. R. and Zeng, Weihua, el al. (2017) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20170202-145154883">Bcl11b and combinatorial resolution of cell fate in the T-cell gene regulatory network</a>; Proceedings of the National Academy of Sciences of the United States of America; Vol. 114; No. 23; 5800-5807; PMCID PMC5468679; <a href="https://doi.org/10.1073/pnas.1610617114">10.1073/pnas.1610617114</a></li>
<li>Tsagaratou, Ageliki and González-Avalos, Edahí, el al. (2017) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20161128-134111050">TET proteins regulate the lineage specification and TCR-mediated expansion of iNKT cells</a>; Nature Immunology; Vol. 18; No. 1; 45-53; PMCID PMC5376256; <a href="https://doi.org/10.1038/ni.3630">10.1038/ni.3630</a></li>
<li>Rothenberg, Ellen V. (2016) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20160923-100429944">Multiple Curricula for B Cell Developmental Programming</a>; Immunity; Vol. 45; No. 3; 457-458; <a href="https://doi.org/10.1016/j.immuni.2016.09.005">10.1016/j.immuni.2016.09.005</a></li>
<li>Manesso, Erica and Kueh, Hao Yuan, el al. (2016) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20160816-102432005">Irreversibility of T-cell specification: insights from computational modelling of a minimal network architecture</a>; PLoS ONE; Vol. 11; No. 8; Art. No. e0161260; PMCID PMC4995000; <a href="https://doi.org/10.1371/journal.pone.0161260">10.1371/journal.pone.0161260</a></li>
<li>Rothenberg, E. and Kueh, H. Y., el al. (2016) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20161021-124515838">Dissecting the transcriptional regulatory network for early T-cell commitment</a>; European Journal of Immunology; Vol. 46; No. S1; 797; <a href="https://doi.org/10.1002/eji.201670200">10.1002/eji.201670200</a></li>
<li>Kueh, Hao Yuan and Yui, Mary A., el al. (2016) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20160613-162442836">Asynchronous combinatorial action of four regulatory factors activates Bcl11b for T cell commitment</a>; Nature Immunology; Vol. 17; No. 8; 956-965; PMCID PMC4955789; <a href="https://doi.org/10.1038/ni.3514">10.1038/ni.3514</a></li>
<li>Rothenberg, Ellen V. and Kueh, Hao Yuan, el al. (2016) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20160425-152503200">Hematopoiesis and T-cell specification as a model developmental system</a>; Immunological Reviews; Vol. 271; No. 1; 72-97; PMCID PMC4837658; <a href="https://doi.org/10.1111/imr.12417">10.1111/imr.12417</a></li>
<li>Rothenberg, Ellen V. (2016) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20160202-124600941">Eric Davidson: Steps to A Gene Regulatory Network for Development</a>; Developmental Biology; Vol. 412; No. 2; S7-S19; PMCID PMC4828313; <a href="https://doi.org/10.1016/j.ydbio.2016.01.020">10.1016/j.ydbio.2016.01.020</a></li>
<li>Van de Walle, Inge and Dolens, Anne-Catherine, el al. (2016) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20160429-141209078">GATA3 induces human T-cell commitment by restraining Notch activity and repressing NK-cell fate</a>; Nature Communications; Vol. 7; Art. No. 11171; PMCID PMC4823830; <a href="https://doi.org/10.1038/ncomms11171">10.1038/ncomms11171</a></li>
<li>Rothenberg, Ellen V. and Ungerbäck, Jonas, el al. (2016) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20160126-153717169">Forging T-Lymphocyte Identity: Intersecting Networks of Transcriptional Control</a>; Advances in Immunology; Vol. 129; 109-174; PMCID PMC4747653; <a href="https://doi.org/10.1016/bs.ai.2015.09.002">10.1016/bs.ai.2015.09.002</a></li>
<li>Hood, Leroy and Rothenberg, Ellen V. (2015) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20151027-160800977">Developmental biologist Eric H. Davidson, 1937–2015</a>; Proceedings of the National Academy of Sciences of the United States of America; Vol. 112; No. 44; 13423-13425; PMCID PMC4640791; <a href="https://doi.org/10.1073/pnas.1518876112">10.1073/pnas.1518876112</a></li>
<li>Champhekar, Ameya and Damle, Sagar S., el al. (2015) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20150409-074847821">Regulation of early T-lineage gene expression and developmental progression by the progenitor cell transcription factor PU.1</a>; Genes and Development; Vol. 29; No. 8; 832-848; PMCID PMC4403259; <a href="https://doi.org/10.1101/gad.259879.115">10.1101/gad.259879.115</a></li>
<li>Rothenberg, Ellen V. (2015) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20160218-133043286">Immune Cell Identity: Perspective from a Palimpsest</a>; Perspectives in Biology and Medicine; Vol. 58; No. 2; 205-228; PMCID PMC4747652; <a href="https://doi.org/10.1353/pbm.2015.0020">10.1353/pbm.2015.0020</a></li>
<li>Scripture-Adams, Deirdre D. and Damle, Sagar S., el al. (2014) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20140905-102102851">GATA-3 Dose-Dependent Checkpoints in Early T Cell Commitment</a>; Journal of Immunology; Vol. 193; No. 7; 3470-3491; PMCID PMC4170028; <a href="https://doi.org/10.4049/jimmunol.1301663">10.4049/jimmunol.1301663</a></li>
<li>Kueh, Hao Yuan and Elowitz, Michael B., el al. (2014) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20140911-141135837">Macrophage and T-cell fate control: Insights from tracking transcription factor dynamics in single cells</a>; Experimental Hematology; Vol. 42; No. 8; S16; <a href="https://doi.org/10.1016/j.exphem.2014.07.054">10.1016/j.exphem.2014.07.054</a></li>
<li>Yui, Mary A. and Rothenberg, Ellen V. (2014) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20140903-154240690">Developmental gene networks: a triathlon on the course to T cell identity</a>; Nature Reviews. Immunology; Vol. 14; No. 8; 529-545; PMCID PMC4153685; <a href="https://doi.org/10.1038/nri3702">10.1038/nri3702</a></li>
<li>Rothenberg, Ellen V. (2014) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20140408-092441274">The chromatin landscape and transcription factors in T cell programming</a>; Trends in Immunology; Vol. 35; No. 5; 195-204; PMCID PMC4039984; <a href="https://doi.org/10.1016/j.it.2014.03.001">10.1016/j.it.2014.03.001</a></li>
<li>Rothenberg, Ellen V. (2014) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20140130-091206404">Transcriptional Control of Early T and B Cell Developmental Choices</a>; Annual Review of Immunology; Vol. 32; 283-321; PMCID PMC3994230; <a href="https://doi.org/10.1146/annurev-immunol-032712-100024">10.1146/annurev-immunol-032712-100024</a></li>
<li>Rothenberg, Ellen V. (2013) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20140103-081036440">Epigenetic mechanisms and developmental choice hierarchies in T-lymphocyte development</a>; Briefings in Functional Genomics; Vol. 12; No. 6; 512-524; PMCID PMC3838197; <a href="https://doi.org/10.1093/bfgp/elt027">10.1093/bfgp/elt027</a></li>
<li>Rothenberg, Ellen V. and Champhekar, Ameya, el al. (2013) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20131028-142315690">Transcriptional Establishment of Cell-Type Identity: Dynamics and Causal Mechanisms of T-Cell Lineage Commitment</a>; Cold Spring Harbor Symposia on Quantitative Biology; Vol. 78; 1-11; PMCID PMC3990665; <a href="https://doi.org/10.1101/sqb.2013.78.020271">10.1101/sqb.2013.78.020271</a></li>
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<li>Rothenberg, Ellen V. (2001) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20150408-095507286">Notchless T cell maturation?</a>; Nature Immunology; Vol. 2; No. 3; 189-190; <a href="https://doi.org/10.1038/85231">10.1038/85231</a></li>
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<li>Telfer, Janice C. and Rothenberg, Ellen V. (2001) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20170206-125607049">Expression and Function of a Stem Cell Promoter for the Murine CBFα2 Gene: Distinct Roles and Regulation in Natural Killer and T Cell Development</a>; Developmental Biology; Vol. 229; No. 2; 363-382; <a href="https://doi.org/10.1006/dbio.2000.9991">10.1006/dbio.2000.9991</a></li>
<li>Rothenberg, Ellen V. (2000) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20170206-114648134">Stepwise specification of lymphocyte developmental lineages</a>; Current Opinion in Genetics and Development; Vol. 10; No. 4; 370-379; <a href="https://doi.org/10.1016/S0959-437X(00)00098-8">10.1016/S0959-437X(00)00098-8</a></li>
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<li>Ward, Susan B. and Hernandez-Hoyos, Gabriela, el al. (1998) <a href="https://resolver.caltech.edu/CaltechAUTHORS:WARnar98.991">Chromatin remodeling of the interleukin-2 gene: distinct alterations in the proximal versus distal enhancer regions</a>; Nucleic Acids Research; Vol. 26; No. 12; 2923-2934; PMCID PMC147656</li>
<li>Wang, Hua and Diamond, Rochelle A., el al. (1998) <a href="https://resolver.caltech.edu/CaltechAUTHORS:WANpnas98">Cross-lineage expression of Ig-beta (B29) in thymocytes: Positive and negative gene regulation to establish T cell identity</a>; Proceedings of the National Academy of Sciences of the United States of America; Vol. 95; No. 12; 6831-6836; PMCID PMC22652</li>
<li>Yang-Snyder, Julia A. and Rothenberg, Ellen V. (1998) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20120117-131739949">Spontaneous Expression of Interleukin-2 In Vivo in Specific Tissues of Young Mice</a>; Developmental Immunology; Vol. 5; No. 4; 223-245; PMCID PMC2275993; <a href="https://doi.org/10.1155/1998/12421">10.1155/1998/12421</a></li>
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<li>Rothenberg, Ellen V. and Ward, Susan B. (1996) <a href="https://resolver.caltech.edu/CaltechAUTHORS:ROTpnas96">A dynamic assembly of diverse transcription factors integrates activation and cell-type information for interleukin 2 gene regulation</a>; Proceedings of the National Academy of Sciences of the United States of America; Vol. 93; No. 18; 9358-9365; PMCID PMC38432</li>
<li>Rothenberg, Ellen V. (1996) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20150114-094250570">How T Cells Count</a>; Science; Vol. 273; No. 5271; 78-79; <a href="https://doi.org/10.1126/science.273.5271.78">10.1126/science.273.5271.78</a></li>
<li>Reya, Tannishtha and Yang-Snyder, Julia A., el al. (1996) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20170208-110702546">Regulated expression and function of CD122 (interleukin-2/interleukin-15R-β) during lymphoid development</a>; Blood; Vol. 87; No. 1; 190-201</li>
<li>Lindenboim, Liora and Diamond, Rochelle, el al. (1995) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20170213-081245647">Apoptosis Induced by Serum Deprivation of PC12 Cells Is Not Preceded by Growth Arrest and Can Occur at Each Phase of the Cell Cycle</a>; Cancer Research; Vol. 55; No. 6; 1242-1247</li>
<li>Rothenberg, Ellen V. (1994) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20170206-135119164">Signaling mechanisms in thymocyte selection</a>; Current Opinion in Immunology; Vol. 6; No. 2; 257-265; <a href="https://doi.org/10.1016/0952-7915(94)90099-X">10.1016/0952-7915(94)90099-X</a></li>
<li>Chen, Dan and Rothenberg, Ellen V. (1994) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20120221-083046033">Interleukin 2 transcription factors as molecular targets of cAMP inhibition: delayed inhibition kinetics and combinatorial transcription roles</a>; Journal of Experimental Medicine; Vol. 179; No. 3; 931-942; PMCID PMC2191402; <a href="https://doi.org/10.1084/jem.179.3.931">10.1084/jem.179.3.931</a></li>
<li>Garrity, Paul A. and Chen, Dan, el al. (1994) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20120221-114430298">Interleukin-2 transcription is regulated in vivo at the level of coordinated binding of both constitutive and regulated factors</a>; Molecular and Cellular Biology; Vol. 14; No. 3; 2159-2169; PMCID PMC358576; <a href="https://doi.org/10.1128/MCB.14.3.2159">10.1128/MCB.14.3.2159</a></li>
<li>Rothenberg, Ellen V. and Diamond, Rochelle A. (1994) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20170206-143349258">Costimulation by interleukin-1 of multiple activation responses in a developmentally restricted subset of immature thymocytes</a>; European Journal of Immunology; Vol. 24; No. 1; 24-33; <a href="https://doi.org/10.1002/eji.1830240105">10.1002/eji.1830240105</a></li>
<li>Rothenberg, Ellen V. and Chen, Dan, el al. (1993) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20170210-111022317">Functional and phenotypic analysis of thymocytes in SCID mice. Evidence for functional response transitions before and after the SCID arrest point</a>; Journal of Immunology; Vol. 151; No. 7; 3530-3546</li>
<li>Chen, Dan and Rothenberg, Ellen V. (1993) <a href="https://resolver.caltech.edu/CaltechAUTHORS:CHEmcb93">Molecular basis for developmental changes in interleukin-2 gene inducibility</a>; Molecular and Cellular Biology; Vol. 13; No. 1; 228-237; PMCID PMC358902</li>
<li>Yang-Snyder, Julia A. and Rothenberg, Ellen V. (1993) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20120308-115336061">Developmental and Anatomical Patterns Of IL-2 Gene Expression in Vivo in The Murine Thymus</a>; Developmental Immunology; Vol. 3; No. 2; 85-102; PMCID PMC2275923; <a href="https://doi.org/10.1155/1993/86096">10.1155/1993/86096</a></li>
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<li>Novak, Thomas J. and Rothenberg, Ellen V. (1990) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20141223-085601805">cAMP inhibits induction of interleukin 2 but not of interleukin 4 in T cells</a>; Proceedings of the National Academy of Sciences of the United States of America; Vol. 87; No. 23; 9353-9357; PMCID PMC55163; <a href="https://doi.org/10.1073/pnas.87.23.9353">10.1073/pnas.87.23.9353</a></li>
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<li>Rothenberg, Ellen V. (1990) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20170206-130127645">Death and transfiguration of cortical thymocytes: a reconsideration</a>; Immunology Today; Vol. 11; No. 4; 116-119; <a href="https://doi.org/10.1016/0167-5699(90)90047-D">10.1016/0167-5699(90)90047-D</a></li>
<li>Rothenberg, Ellen V. and Diamond, Rochelle A., el al. (1990) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20170207-105303837">IL-2 gene inducibility in T cells before T cell receptor expression. Changes in signaling pathways and gene expression requirements during intrathymic maturation</a>; Journal of Immunology; Vol. 144; No. 5; 1614-1624</li>
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<li>Rothenberg, Ellen V. (1989) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20170206-131122567">The long road to functional maturity for developing T cells</a>; Immunology Today; Vol. 10; No. 4; 116-117; <a href="https://doi.org/10.1016/0167-5699(89)90243-0">10.1016/0167-5699(89)90243-0</a></li>
<li>McGuire, Kathleen L. and Yang, Julia A., el al. (1988) <a href="https://resolver.caltech.edu/CaltechAUTHORS:MCGpnas88">Influence of activating stimulus on functional phenotype: Interleukin 2 mRNA accumulation differentially induced by ionophore and receptor ligands in subsets of murine T cells</a>; Proceedings of the National Academy of Sciences of the United States of America; Vol. 85; No. 17; 6503-6507; PMCID PMC282001</li>
<li>Rothenberg, Ellen V. and McGuire, Kathleen L., el al. (1988) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20170206-155009290">Molecular Indices of Functional Competence in Developing T Cells</a>; Immunological Reviews; Vol. 104; No. 1; 29-53; <a href="https://doi.org/10.1111/j.1600-065X.1988.tb00758.x">10.1111/j.1600-065X.1988.tb00758.x</a></li>
<li>Boyer, Paul D. and Rothenberg, Ellen V. (1988) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20170210-113249636">IL-2 receptor inducibility is blocked in cortical-type thymocytes</a>; Journal of Immunology; Vol. 140; No. 9; 2886-2892</li>
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<li>McGuire, Kathleen L. and Rothenberg, Ellen V. (1987) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20170216-143807033">Inducibility of interleukin-2 RNA expression in individual mature and immature T lymphocytes</a>; EMBO Journal; Vol. 6; No. 4; 939-946; PMCID PMC553486</li>
<li>Haas, Martin and Altman, Amnon, el al. (1987) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20170206-144350445">Radiation leukemia virus and X-irradiation induce in C57BL/6 mice two distinct T-cell neoplasms: A growth factor-dependent lymphoma and a growth factor-independent lymphoma</a>; Leukemia Research; Vol. 11; No. 3; 223-239; <a href="https://doi.org/10.1016/0145-2126(87)90046-4">10.1016/0145-2126(87)90046-4</a></li>
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<li>Rothenberg, Ellen and Lugo, James P. (1985) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20170206-145032179">Differentiation and cell division in the mammalian thymus</a>; Developmental Biology; Vol. 112; No. 1; 1-17; <a href="https://doi.org/10.1016/0012-1606(85)90114-9">10.1016/0012-1606(85)90114-9</a></li>
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<li>Caplan, Barry and Rothenberg, Ellen (1984) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20170208-153958374">High-level secretion of interleukin 2 by a subset of proliferating thymic lymphoblasts</a>; Journal of Immunology; Vol. 133; No. 4; 1983-1991</li>
<li>Haas, Martin and Altman, Amnon, el al. (1984) <a href="https://resolver.caltech.edu/CaltechAUTHORS:HAApnas84">Mechanism of T-Cell Lymphomagenesis: Transformation of Growth-Factor-Dependent T-Lymphoblastoma Cells to Growth-Factor-Independent T-Lymphoma Cells</a>; Proceedings of the National Academy of Sciences of the United States of America; Vol. 81; No. 6; 1742-1746; PMCID PMC344995</li>
<li>Rothenberg, Ellen and Triglia, Dennis (1983) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20170213-091823076">Clonal proliferation unlinked to terminal deoxynucleotidyl transferase synthesis in thymocytes of young mice</a>; Journal of Immunology; Vol. 130; No. 4; 1627-1633</li>
<li>Rothenberg, E. and Triglia, D. (1983) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20170210-131601098">Lyt-2 glycoprotein is synthesized as a single molecular species</a>; Journal of Experimental Medicine; Vol. 157; No. 1; 365-370; PMCID PMC2186898; <a href="https://doi.org/10.1084/jem.157.1.365">10.1084/jem.157.1.365</a></li>
<li>Rothenberg, Ellen (1982) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20170206-145740897">What is the role of T-lymphocyte surveillance in neoplastic disease?</a>; American Journal of Surgery; Vol. 143; No. 6; 664-669; <a href="https://doi.org/10.1016/0002-9610(82)90032-0">10.1016/0002-9610(82)90032-0</a></li>
<li>Rothenberg, Ellen (1982) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20170207-084442559">A specific biosynthetic marker for immature thymic lymphoblasts. Active synthesis of thymus-leukemia antigen restricted to proliferating cells</a>; Journal of Experimental Medicine; Vol. 155; No. 1; 140-154; PMCID PMC2186575; <a href="https://doi.org/10.1084/jem.155.1.140">10.1084/jem.155.1.140</a></li>
<li>Rothenberg, Ellen and Triglia, Dennis (1981) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20170206-150254519">Structure and expression of glycoproteins controlled by the Qa-1^a allele</a>; Immunogenetics; Vol. 14; No. 6; 455-468; <a href="https://doi.org/10.1007/BF00350118">10.1007/BF00350118</a></li>
<li>Triglia, Dennis and Rothenberg, Ellen V. (1981) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20170207-073659882">&quot;Mature&quot; thymocytes are not glucocorticoid-resistant in vitro</a>; Journal of Immunology; Vol. 127; No. 1; 64-68</li>
<li>Michaelson, James and Rothenberg, Ellen, el al. (1980) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20170206-150723974">Genetic polymorphism of murineβ_2-microglobulin detected biochemically</a>; Immunogenetics; Vol. 11-11; No. 1; 93-95; <a href="https://doi.org/10.1007/BF01567773">10.1007/BF01567773</a></li>
<li>Rothenberg, Ellen (1980) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20170209-084208618">Expression of Differentiation Antigens in Subpopulations of Mouse Thymocytes: Regulation at the Level of de Novo Synthesis</a>; Cell; Vol. 20; No. 1; 1-9; <a href="https://doi.org/10.1016/0092-8674(80)90228-7">10.1016/0092-8674(80)90228-7</a></li>
<li>Rothenberg, Ellen and Triglia, Dennis (1980) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20170206-150943857">In vitro maintenance of differentiation marker synthesis by subpopulations of mouse thymocytes</a>; Journal of Supramolecular Structure; Vol. 14; No. 3; 371-382; <a href="https://doi.org/10.1002/jss.400140310">10.1002/jss.400140310</a></li>
<li>Rothenberg, E. and Boyser, Edward A. (1979) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20170213-072709317">Synthesis and processing of molecules bearing thymus leukemia antigen</a>; Journal of Experimental Medicine; Vol. 150; No. 4; 777-791; PMCID PMC2185687; <a href="https://doi.org/10.1084/jem.150.4.777">10.1084/jem.150.4.777</a></li>
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<li>Donoghue, Daniel J. and Rothenberg, Ellen, el al. (1978) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20170209-082835063">Heteroduplex Analysis of the Nonhomology Region between Moloney MuLV and the Dual Host Range Derivative HIX Virus</a>; Cell; Vol. 14; No. 4; 959-970; <a href="https://doi.org/10.1016/0092-8674(78)90350-1">10.1016/0092-8674(78)90350-1</a></li>
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<li>Rothenberg, Ellen and Donoghue, Daniel J., el al. (1978) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20170207-111017078">Analysis of a 5' Leader Sequence on Murine Leukemia Virus 21S RNA: Heteroduplex Mapping with Long Reverse Transcriptase Products</a>; Cell; Vol. 13; No. 3; 435-451; <a href="https://doi.org/10.1016/0092-8674(78)90318-5">10.1016/0092-8674(78)90318-5</a></li>
<li>Rothenberg, Ellen and Smotkin, David, el al. (1977) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20170207-083820520">In vitro synthesis of infectious DNA of murine leukaemia virus</a>; Nature; Vol. 269; No. 5624; 122-126; <a href="https://doi.org/10.1038/269122a0">10.1038/269122a0</a></li>
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