<h1>Pierce, Niles</h1>
<h2>Dataset from <a href="https://data.caltech.edu">CaltechTHESIS committee</a></h2>
<ul>
<li>Pandey, Ayush (2024) <a href="https://resolver.caltech.edu/CaltechTHESIS:06062023-021337351">Modeling Frameworks for Modular and Scalable Biological Circuit Design</a>; <a href="https://doi.org/10.7907/qacp-dw76">10.7907/qacp-dw76</a></li>
<li>Schulte, Samuel Jordan (2023) <a href="https://resolver.caltech.edu/CaltechTHESIS:06092023-193714022">New HCR Technologies: 10-Plex Quantitative Spectral Imaging of RNAs and Proteins; Multiplexed Quantitative Imaging of Protein:Protein Complexes; and Sensitive, Instrument-Free, At-Home Pathogen Detection</a>; <a href="https://doi.org/10.7907/nzk8-2d38">10.7907/nzk8-2d38</a></li>
<li>Chen, Zhewei (2023) <a href="https://resolver.caltech.edu/CaltechTHESIS:12022022-010002116">Engineering Conditional Guide RNAs for Cell-Selective Regulation of CRISPR/Cas9</a>; <a href="https://doi.org/10.7907/cajs-d417">10.7907/cajs-d417</a></li>
<li>Huang, Jining (2023) <a href="https://resolver.caltech.edu/CaltechTHESIS:01172023-195222304">Applications of Dynamic Nucleic Acid Nanotechnology in Closed-Loop Genetic Circuits and Detection of Viral Pathogens</a>; <a href="https://doi.org/10.7907/54tw-ym95">10.7907/54tw-ym95</a></li>
<li>Fornace, Mark Evan (2022) <a href="https://resolver.caltech.edu/CaltechTHESIS:12212021-202554260">Computational Methods for Simulating and Parameterizing Nucleic Acid Secondary Structure Thermodynamics and Kinetics</a>; <a href="https://doi.org/10.7907/ayeg-at42">10.7907/ayeg-at42</a></li>
<li>Ortiz-Muñoz, Andrés (2022) <a href="https://resolver.caltech.edu/CaltechTHESIS:04182022-222416729">Combinatorics and Stochasticity for Chemical Reaction Networks</a>; <a href="https://doi.org/10.7907/s9mc-3d59">10.7907/s9mc-3d59</a></li>
<li>Cheng, Lixue (2022) <a href="https://resolver.caltech.edu/CaltechThesis:04012022-153013173">Accurate and Transferable Molecular-Orbital-Based Machine Learning for Molecular Modeling</a>; <a href="https://doi.org/10.7907/cjak-4x38">10.7907/cjak-4x38</a></li>
<li>Savela, Emily Sue (2022) <a href="https://resolver.caltech.edu/CaltechTHESIS:10072021-173853251">Nucleic Acid Measurements for Antibiotic Susceptibility Testing and Early Detection of SARS-CoV-2</a>; <a href="https://doi.org/10.7907/vp9a-n206">10.7907/vp9a-n206</a></li>
<li>Hoffmann, Magnus Adrian Gero (2022) <a href="https://resolver.caltech.edu/CaltechTHESIS:10302021-184745797">Nanoparticle Technologies to Cure and Prevent Infectious Diseases</a>; <a href="https://doi.org/10.7907/g0w1-rc77">10.7907/g0w1-rc77</a></li>
<li>Shur, Andrey Sergeyvich (2022) <a href="https://resolver.caltech.edu/CaltechTHESIS:12212021-193826426">Serine Integrase-Based Event Recording in E. coli</a>; <a href="https://doi.org/10.7907/x4q0-nx18">10.7907/x4q0-nx18</a></li>
<li>Ren, Xinying (Cindy) (2021) <a href="https://resolver.caltech.edu/CaltechTHESIS:05262021-072231177">Principles for Designing Robust and Stable Synthetic Microbial Consortia</a>; <a href="https://doi.org/10.7907/hc8x-3280">10.7907/hc8x-3280</a></li>
<li>McCardell, Reed Dillard (2021) <a href="https://resolver.caltech.edu/CaltechTHESIS:05082021-185615529">Genetic Circuits for the Control of Multi-Strain Bacterial Populations</a>; <a href="https://doi.org/10.7907/wgpp-vj97">10.7907/wgpp-vj97</a></li>
<li>Porubsky, Nicholas James (2020) <a href="https://resolver.caltech.edu/CaltechTHESIS:10062019-213347699">Enhanced Algorithms for Analysis and Design of Nucleic Acid Reaction Pathways</a>; <a href="https://doi.org/10.7907/M8CZ-MW98">10.7907/M8CZ-MW98</a></li>
<li>Hanewich-Hollatz, Mikhail Henning (2020) <a href="https://resolver.caltech.edu/CaltechTHESIS:11042019-135312842">Conditional Guide RNAs: Programmable Conditional Regulation of CRISPR/Cas Function via Dynamic RNA Nanotechnology</a>; <a href="https://doi.org/10.7907/NS2B-DJ96">10.7907/NS2B-DJ96</a></li>
<li>Johnson, Robert Francis (2020) <a href="https://resolver.caltech.edu/CaltechTHESIS:04292020-052418975">Formal Design and Analysis for DNA Implementations of Chemical Reaction Networks</a>; <a href="https://doi.org/10.7907/a74v-kv80">10.7907/a74v-kv80</a></li>
<li>Baetica, Ania-Ariadna (2018) <a href="https://resolver.caltech.edu/CaltechTHESIS:06042018-171639726">Design, Analysis, And Computational Methods For Engineering Synthetic Biological Networks</a>; <a href="https://doi.org/10.7907/98qt-zv92">10.7907/98qt-zv92</a></li>
<li>Burke, Kelly Suzanne (2018) <a href="https://resolver.caltech.edu/CaltechTHESIS:07292017-201142545">Visualizing mRNA Translation in situ in Single Cells</a>; <a href="https://doi.org/10.7907/Z92B8W6R">10.7907/Z92B8W6R</a></li>
<li>Acharya, Aneesh (2016) <a href="https://resolver.caltech.edu/CaltechTHESIS:06032016-143422651">Multiplexed Analysis of Diverse RNA Classes via Hybridization Chain Reaction</a>; <a href="https://doi.org/10.7907/Z95M63N0">10.7907/Z95M63N0</a></li>
<li>Hsiao, Victoria (2016) <a href="https://resolver.caltech.edu/CaltechTHESIS:05082016-170628018">Synthetic Circuits for Feedback and Detection in Bacteria</a>; <a href="https://doi.org/10.7907/Z9WD3XJW">10.7907/Z9WD3XJW</a></li>
<li>Husain, Naeem Shahab (2016) <a href="https://resolver.caltech.edu/CaltechTHESIS:02252016-123239637">Mapping mRNA and Protein Expression with High Signal-to-Background in Diverse Organisms</a>; <a href="https://doi.org/10.7907/Z9DF6P73">10.7907/Z9DF6P73</a></li>
<li>Trivedi, Vikas (2015) <a href="https://resolver.caltech.edu/CaltechTHESIS:05292015-080950114">From Molecules to Organs : Microscopy and Multi-Scale Nature of Development</a>; <a href="https://doi.org/10.7907/Z9SX6B59">10.7907/Z9SX6B59</a></li>
<li>Wannier, Timothy Milton (2015) <a href="https://resolver.caltech.edu/CaltechTHESIS:01272015-110638252">Computationally Guided Monomerization of Red Fluorescent Proteins of the Class Anthozoa</a>; <a href="https://doi.org/10.7907/Z9571908">10.7907/Z9571908</a></li>
<li>Srinivas, Niranjan (2015) <a href="https://resolver.caltech.edu/CaltechTHESIS:06012015-171243593">Programming Chemical Kinetics: Engineering Dynamic Reaction Networks with DNA Strand Displacement</a>; <a href="https://doi.org/10.7907/Z9KD1VVJ">10.7907/Z9KD1VVJ</a></li>
<li>Evans, Constantine Glen (2014) <a href="https://resolver.caltech.edu/CaltechTHESIS:05132014-142306756">Crystals that Count! Physical Principles and Experimental Investigations of DNA Tile Self-Assembly</a>; <a href="https://doi.org/10.7907/7FMK-9403">10.7907/7FMK-9403</a></li>
<li>Sun, Bing (2014) <a href="https://resolver.caltech.edu/CaltechTHESIS:05052014-142031176">Mechanistic Studies of Reactions at the Single-Molecule Level using Microfluidics with Applications in Molecular Diagnostics</a>; <a href="https://doi.org/10.7907/BT81-YX06">10.7907/BT81-YX06</a></li>
<li>Wolfe, Brian Robert (2014) <a href="https://resolver.caltech.edu/CaltechTHESIS:03272014-193400848">Design and Analysis of Nucleic Acid Reaction Pathways</a>; <a href="https://doi.org/10.7907/G4XZ-ZF47">10.7907/G4XZ-ZF47</a></li>
<li>Hamdouche, Samy (2014) <a href="https://resolver.caltech.edu/CaltechTHESIS:06062014-175608943">Engineered Antibody and Monobody Domains with T Cell Receptor-Like Selectivity for Tumor Associated Peptide-MHC Antigens</a>; <a href="https://doi.org/10.7907/Z9WH2N02">10.7907/Z9WH2N02</a></li>
<li>Schwarzkopf, Ma'ayan (2013) <a href="https://resolver.caltech.edu/CaltechTHESIS:05212013-161536447">Engineering Nucleic Acid Mechanisms for Regulation and Readout of Gene Expression: Conditional Dicer Substrate Formation and Sensitive Multiplexed Northern Blots</a>; <a href="https://doi.org/10.7907/Z94Q7S0V">10.7907/Z94Q7S0V</a></li>
<li>Pahlevan, Niema Mohammed (2013) <a href="https://resolver.caltech.edu/CaltechTHESIS:05082013-152249157">A Systems Approach to Cardiovascular Health and Disease with a Focus on Aortic Wave Dynamics</a>; <a href="https://doi.org/10.7907/Z9DR2SFM">10.7907/Z9DR2SFM</a></li>
<li>Woo, Sungwook (2013) <a href="https://resolver.caltech.edu/CaltechTHESIS:05302013-123041371">Beyond Watson and Crick: Programming the Self-Assembly and Reconfiguration of DNA Nanostructures Based on Stacking Interactions</a>; <a href="https://doi.org/10.7907/4NZK-XK58">10.7907/4NZK-XK58</a></li>
<li>Dabby, Nadine L. (2013) <a href="https://resolver.caltech.edu/CaltechTHESIS:05122013-221658522">Synthetic Molecular Machines for Active Self-Assembly: Prototype Algorithms, Designs, and Experimental Study</a>; <a href="https://doi.org/10.7907/T0ZG-PA07">10.7907/T0ZG-PA07</a></li>
<li>Sternberg, Jonathan Ben-Zion (2013) <a href="https://resolver.caltech.edu/CaltechTHESIS:06072013-170244348">Signal Transduction with Hybridization Chain Reactions</a>; <a href="https://doi.org/10.7907/Z90Z719Z">10.7907/Z90Z719Z</a></li>
<li>Hochrein, Lisa Marie (2013) <a href="https://resolver.caltech.edu/CaltechTHESIS:06072013-160243112">Towards Conditional RNAi : Shape and Sequence Transduction with Small Conditional RNAs</a>; <a href="https://doi.org/10.7907/NTZT-8Q67">10.7907/NTZT-8Q67</a></li>
<li>Schaeffer, Joseph Malcolm (2013) <a href="https://resolver.caltech.edu/CaltechTHESIS:02042013-110332492">Stochastic Simulation of the Kinetics of Multiple Interacting Nucleic Acid Strands</a>; <a href="https://doi.org/10.7907/JEBY-6X69">10.7907/JEBY-6X69</a></li>
<li>Johnson, Stephanie Lynn (2012) <a href="https://resolver.caltech.edu/CaltechTHESIS:05112012-140027276">DNA Mechanics and Transcriptional Regulation in the E. coli lac Operon</a>; <a href="https://doi.org/10.7907/W40T-PD39">10.7907/W40T-PD39</a></li>
<li>Choi, Harry Ming Tak (2010) <a href="https://resolver.caltech.edu/CaltechTHESIS:12292009-170615072">Programmable In Situ Amplification for Multiplexed Bioimaging
</a>; <a href="https://doi.org/10.7907/K4A3-1K41">10.7907/K4A3-1K41</a></li>
<li>Zhang, David Yu (2010) <a href="https://resolver.caltech.edu/CaltechTHESIS:05262010-173410602">Dynamic DNA Strand Displacement Circuits</a>; <a href="https://doi.org/10.7907/Q4NR-CH87">10.7907/Q4NR-CH87</a></li>
<li>Zadeh, Joseph N. (2010) <a href="https://resolver.caltech.edu/CaltechTHESIS:05112010-205335518">Algorithms for Nucleic Acid Sequence Design</a>; <a href="https://doi.org/10.7907/20DG-NF39">10.7907/20DG-NF39</a></li>
<li>Wu, David Dah-wei (2010) <a href="https://resolver.caltech.edu/CaltechTHESIS:05182010-213110299">Biomechanical Information Transfer: Maximum Caliber, λ Genome Ejection Dynamics, and the Formation of Otoliths in Zebrafish</a>; <a href="https://doi.org/10.7907/X454-MV52">10.7907/X454-MV52</a></li>
<li>Beisel, Chase Lawrence (2009) <a href="https://resolver.caltech.edu/CaltechETD:etd-05212009-144705">Engineering Ligand Control of RNA Interference</a>; <a href="https://doi.org/10.7907/CBRX-PG36">10.7907/CBRX-PG36</a></li>
<li>Othmer, Jonathan Andrew (2009) <a href="https://resolver.caltech.edu/CaltechETD:etd-12312008-153810">Algorithms for Mapping Nucleic Acid Free Energy Landscapes</a>; <a href="https://doi.org/10.7907/VJX1-6376">10.7907/VJX1-6376</a></li>
<li>Lyon, Mark Edward (2009) <a href="https://resolver.caltech.edu/CaltechETD:etd-07312008-102751">High-Order Unconditionally-Stable FC-AD PDE Solvers for General Domains</a>; <a href="https://doi.org/10.7907/3FFW-GK56">10.7907/3FFW-GK56</a></li>
<li>Monro, John Anderson (2008) <a href="https://resolver.caltech.edu/CaltechETD:etd-01032008-222910">A Super-Algebraically Convergent, Windowing-Based Approach to the Evaluation of Scattering from Periodic Rough Surfaces</a>; <a href="https://doi.org/10.7907/F9VM-JP39">10.7907/F9VM-JP39</a></li>
<li>McHale, Kevin L. (2008) <a href="https://resolver.caltech.edu/CaltechETD:etd-05072008-204627">Feedback Tracking and Correlation Spectroscopy of Fluorescent Nanoparticles and Biomolecules</a>; <a href="https://doi.org/10.7907/6YYA-9T10">10.7907/6YYA-9T10</a></li>
<li>Latini, Marco (2007) <a href="https://resolver.caltech.edu/CaltechETD:etd-12082006-124547">Simulations and Analysis of Two- and Three-Dimensional Single-Mode Richtmyer-Meshkov Instability using Weighted Essentially Non-Oscillatory and Vortex Methods</a>; <a href="https://doi.org/10.7907/1397-GZ04">10.7907/1397-GZ04</a></li>
<li>Bois, Justin S. (2007) <a href="https://resolver.caltech.edu/CaltechETD:etd-05242007-211446">Analysis of Interacting Nucleic Acids in Dilute Solutions</a>; <a href="https://doi.org/10.7907/2JCJ-SX75">10.7907/2JCJ-SX75</a></li>
<li>Alvizo, Oscar (2007) <a href="https://resolver.caltech.edu/CaltechETD:etd-05212007-164114">Computational Protein Design Force Field Optimization: A Negative Design Approach</a>; <a href="https://doi.org/10.7907/NYVY-7Z76">10.7907/NYVY-7Z76</a></li>
<li>Strinopoulos, Theofilos (2006) <a href="https://resolver.caltech.edu/CaltechETD:etd-02192006-165348">Upscaling Immiscible Two-Phase Flows in an Adaptive Frame</a>; <a href="https://doi.org/10.7907/AP0P-8S11">10.7907/AP0P-8S11</a></li>
<li>Forster, Robert Burke (2006) <a href="https://resolver.caltech.edu/CaltechETD:etd-04262006-231415">Population Dynamics in the Presence of Quasispecies Effects and Changing Environments</a>; <a href="https://doi.org/10.7907/QHEA-NV73">10.7907/QHEA-NV73</a></li>
<li>Zollars, Eric Stafford (2006) <a href="https://resolver.caltech.edu/CaltechETD:etd-06052006-155305">Force Field Development in Protein Design</a>; <a href="https://doi.org/10.7907/55br-9a21">10.7907/55br-9a21</a></li>
<li>Stredie, Valentin Gabriel (2005) <a href="https://resolver.caltech.edu/CaltechETD:etd-05272005-004852">Mathematical Modeling and Simulation of Aquatic and Aerial Animal Locomotion</a>; <a href="https://doi.org/10.7907/8PWE-RK28">10.7907/8PWE-RK28</a></li>
<li>Hom, Geoffrey Kai Tong (2005) <a href="https://resolver.caltech.edu/CaltechETD:etd-05302005-223153">Advances in Computational Protein Design: Development of More Efficient Search Algorithms and their Application to the Full-Sequence Design of Larger Proteins</a>; <a href="https://doi.org/10.7907/M4R9-YM51">10.7907/M4R9-YM51</a></li>
<li>Endelman, Jeffrey B. (2005) <a href="https://resolver.caltech.edu/CaltechETD:etd-06022005-192548">Design and Analysis of Combinatorial Protein Libraries Created by Site-Directed Recombination</a>; <a href="https://doi.org/10.7907/GF35-Q269">10.7907/GF35-Q269</a></li>
<li>Westhead, Andrew Neil (2005) <a href="https://resolver.caltech.edu/CaltechETD:etd-05252005-085744">Upscaling for Two-Phase Flows in Porous Media</a>; <a href="https://doi.org/10.7907/T7Q0-FG76">10.7907/T7Q0-FG76</a></li>
<li>Shah, Premal S. (2005) <a href="https://resolver.caltech.edu/CaltechETD:etd-04042005-142719">Advances in Force Field Development and Sequence Optimization Methods for Computational Protein Design</a>; <a href="https://doi.org/10.7907/mg9x-s593">10.7907/mg9x-s593</a></li>
<li>Dirks, Robert Michael (2005) <a href="https://resolver.caltech.edu/CaltechETD:etd-05242005-133116">Analysis, Design, and Construction of Nucleic Acid Devices</a>; <a href="https://doi.org/10.7907/VZ43-FM66">10.7907/VZ43-FM66</a></li>
<li>Stredie, Valentin Gabriel (2005) <a href="https://resolver.caltech.edu/CaltechETD:etd-05272005-004852">Mathematical Modeling and Simulation of Aquatic and Aerial Animal Locomotion</a>; <a href="https://doi.org/10.7907/8PWE-RK28">10.7907/8PWE-RK28</a></li>
<li>Spakowitz, Andrew James (2005) <a href="https://resolver.caltech.edu/CaltechETD:etd-11162004-120143">Semiflexible Polymers: Fundamental Theory and Applications in DNA Packaging</a>; <a href="https://doi.org/10.7907/GGY2-SZ67">10.7907/GGY2-SZ67</a></li>
<li>Chaubell, Mario Julián (2004) <a href="https://resolver.caltech.edu/CaltechETD:etd-09092003-212358">Low-Coherence Interferometric Imaging: Solution of the One-Dimensional Inverse Scattering Problem</a>; <a href="https://doi.org/10.7907/ED7Y-Q436">10.7907/ED7Y-Q436</a></li>
<li>Kastner, Jason Christopher (2003) <a href="https://resolver.caltech.edu/CaltechETD:etd-10042002-200303">Modeling a Hox Gene Network: Stochastic Simulation with Experimental Perturbation</a>; <a href="https://doi.org/10.7907/2TWD-EK72">10.7907/2TWD-EK72</a></li>
<li>Greenberg, Andrei Yakovlevich (2003) <a href="https://resolver.caltech.edu/CaltechETD:etd-09042002-131120">Chebyshev Spectral Method for Singular Moving Boundary Problems with Application to Finance</a>; <a href="https://doi.org/10.7907/J383-YX41">10.7907/J383-YX41</a></li>
<li>Hyde, Edward McKay (2003) <a href="https://resolver.caltech.edu/CaltechETD:etd-08142002-182101">Fast, High-Order Methods for Scattering by Inhomogeneous Media</a>; <a href="https://doi.org/10.7907/Z0V0-KM52">10.7907/Z0V0-KM52</a></li>
<li>Fetecau, Razvan Constantin (2003) <a href="https://resolver.caltech.edu/CaltechETD:etd-05222003-110241">Variational Methods for Nonsmooth Mechanics</a>; <a href="https://doi.org/10.7907/VXBJ-R447">10.7907/VXBJ-R447</a></li>
<li>Ginis, Roman (2002) <a href="https://resolver.caltech.edu/CaltechETD:etd-11012005-093745">Automating Resource Management for Distributed Business Processes</a>; <a href="https://doi.org/10.7907/9GXT-BD03">10.7907/9GXT-BD03</a></li>
<li>Craciun, Bogdan (2002) <a href="https://resolver.caltech.edu/CaltechTHESIS:10082010-142653040">Phase Boundary Propagation in Heterogeneous Media</a>; <a href="https://doi.org/10.7907/JXG6-W865">10.7907/JXG6-W865</a></li>
<li>Feldmann, Michael Todd (2002) <a href="https://resolver.caltech.edu/CaltechTHESIS:01252012-135136531">Quantum Monte Carlo: Quest to Get Bigger, Faster, and Cheaper</a>; <a href="https://doi.org/10.7907/4D4F-WZ34">10.7907/4D4F-WZ34</a></li>
<li>Craciun, Bogdan (2002) <a href="https://resolver.caltech.edu/CaltechTHESIS:10082010-142653040">Phase Boundary Propagation in Heterogeneous Media</a>; <a href="https://doi.org/10.7907/JXG6-W865">10.7907/JXG6-W865</a></li>
<li>Feldmann, Michael Todd (2002) <a href="https://resolver.caltech.edu/CaltechTHESIS:01252012-135136531">Quantum Monte Carlo: Quest to Get Bigger, Faster, and Cheaper</a>; <a href="https://doi.org/10.7907/4D4F-WZ34">10.7907/4D4F-WZ34</a></li>
<li>Ginis, Roman (2002) <a href="https://resolver.caltech.edu/CaltechETD:etd-11012005-093745">Automating Resource Management for Distributed Business Processes</a>; <a href="https://doi.org/10.7907/9GXT-BD03">10.7907/9GXT-BD03</a></li>
</ul>