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    journal = "Biophysical Journal",
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    year = "2022",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20220422-225130615",
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    year = "2022",
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    title = "Measuring energy consumption through space and time in an active matter system of cytoskeletal motors and filaments",
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    year = "2022",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20220422-296339700",
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    volume = "38",
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    id = "record",
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    url = "https://resolver.caltech.edu/CaltechAUTHORS:20200526-121021095",
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    url = "https://resolver.caltech.edu/CaltechAUTHORS:20200121-102719123",
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    url = "https://resolver.caltech.edu/CaltechAUTHORS:20190402-080512452",
    id = "record",
    issn = "2470-0045",
    doi = "10.1103/PhysRevE.102.022404",
    volume = "102"
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    year = "2020",
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    doi = "10.1093/nar/gkaa418",
    volume = "48",
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    year = "2020",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20191202-142214486",
    id = "record",
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    volume = "15",
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    year = "2020",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20200331-215659202",
    id = "record",
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    title = {Schrodinger's "What is Life" At 75: The Physical Aspects of the Living Cell Revisited},
    journal = "Biophysical Journal",
    year = "2020",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20200210-092745829",
    id = "record",
    issn = "0006-3495",
    doi = "10.1016/j.bpj.2019.11.204",
    volume = "118"
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    title = "Modeling Microbial Interactions across Nutritional Environments using Maximum Entropy",
    journal = "Biophysical Journal",
    year = "2020",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20200210-111428049",
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    journal = "Biophysical Journal",
    year = "2020",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20200210-095852686",
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    url = "https://resolver.caltech.edu/CaltechAUTHORS:20200210-085326975",
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    title = "Allostery and Kinetic Proofreading",
    journal = "Journal of Physical Chemistry B",
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    url = "https://resolver.caltech.edu/CaltechAUTHORS:20191202-151154014",
    id = "record",
    issn = "1520-6106",
    doi = "10.1021/acs.jpcb.9b08380",
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    id = "record"
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    id = "record",
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    doi = "10.1038/s41586-019-1447-1",
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    id = "record",
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    journal = "Journal of Physical Chemistry B",
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    title = "Measuring the Energetic Costs of Embryonic Development",
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    url = "https://resolver.caltech.edu/CaltechAUTHORS:20190311-132254175",
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    title = "Human Phageprints: A high-resolution exploration of oral phages reveals globally-distributed phage families with individual-specific and temporally-stable community compositions",
    year = "2019",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20190110-132257326",
    id = "record",
    doi = "10.1101/516864"
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    title = "Measuring cis-regulatory energetics in living cells using allelic manifolds",
    journal = "eLife",
    year = "2018",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20181128-093526476",
    id = "record",
    issn = "2050-084X",
    doi = "10.7554/eLife.40618",
    volume = "7"
}


@other{https://resolver.caltech.edu/CaltechAUTHORS:20181128-093526917,
    title = "Modeling Entropic and Energetic Effects of Linker Length and Rigidity within Synthetic HIV-1 Antibodies designed to Bind Bivalently to Env Spikes",
    year = "2018",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20181128-093526917",
    id = "record",
    doi = "10.1101/406454"
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    title = "Connecting the dots between mechanosensitive channel abundance, osmotic shock, and survival at single-cell resolution",
    journal = "Journal of Bacteriology",
    year = "2018",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20180917-125104010",
    id = "record",
    issn = "0021-9193",
    doi = "10.1128/jb.00460-18",
    volume = "200",
    pmcid = "PMC6222198"
}


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    title = "Theoretical analysis of inducer and operator binding for cyclic-AMP receptor protein mutants",
    journal = "PLoS ONE",
    year = "2018",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20181009-105623284",
    id = "record",
    issn = "1932-6203",
    doi = "10.1371/journal.pone.0204275",
    volume = "13",
    pmcid = "PMC6157895"
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    title = "Harnessing Avidity: Quantifying Entropic and Energetic Effects of Linker Length and Rigidity Required for Multivalent Binding of Antibodies to HIV-1 Spikes",
    year = "2018",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20200117-131810813",
    id = "record",
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    year = "2018",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20180927-114224268",
    id = "record",
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    year = "2018",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20180927-114222775",
    id = "record",
    doi = "10.1101/380972"
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    title = "The biomass distribution on Earth",
    journal = "Proceedings of the National Academy of Sciences of the United States of America",
    year = "2018",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20180521-155526693",
    id = "record",
    issn = "0027-8424",
    doi = "10.1073/pnas.1711842115",
    volume = "115",
    pmcid = "PMC6016768"
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    title = "Systematic approach for dissecting the molecular mechanisms of transcriptional regulation in bacteria",
    journal = "Proceedings of the National Academy of Sciences of the United States of America",
    year = "2018",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20180507-083945479",
    id = "record",
    issn = "0027-8424",
    doi = "10.1073/pnas.1722055115",
    volume = "115",
    pmcid = "PMC6003448"
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    title = "Tuning transcriptional regulation through signaling: A predictive theory of allosteric induction",
    journal = "Cell Systems",
    year = "2018",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20171204-090149985",
    id = "record",
    issn = "2405-4712",
    doi = "10.1016/j.cels.2018.02.004",
    volume = "6",
    pmcid = "PMC5991102"
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    title = "Research: A comprehensive and quantitative exploration of thousands of viral genomes",
    journal = "eLife",
    year = "2018",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20180409-140949316",
    id = "record",
    issn = "2050-084X",
    doi = "10.7554/eLife.31955",
    volume = "7",
    pmcid = "PMC5908442"
}


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    title = "Two-Stage Dynamics of In Vivo Bacteriophage Genome Ejection",
    journal = "Physical Review X",
    year = "2018",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20180501-112937401",
    id = "record",
    issn = "2160-3308",
    doi = "10.1103/PhysRevX.8.021029",
    volume = "8"
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    title = "Skewing the Playing Field: A Single-Molecule Study on how RSS Sequence Influences Gene Segment Selection",
    journal = "Biophysical Journal",
    year = "2018",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20180510-124207785",
    id = "record",
    issn = "0006-3495",
    doi = "10.1016/j.bpj.2017.11.511",
    volume = "114"
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    title = "A Systematic and Scalable Approach for Dissecting the Molecular Mechanisms of Transcriptional Regulation in Bacteria",
    journal = "Biophysical Journal",
    year = "2018",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20180523-143351877",
    id = "record",
    issn = "0006-3495",
    doi = "10.1016/j.bpj.2017.11.849",
    volume = "114"
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@article{https://resolver.caltech.edu/CaltechAUTHORS:20180523-152301882,
    title = "Theoretical Analysis of Allosteric and Operator Binding for Cyclic-AMP Receptor Protein Mutants",
    journal = "Biophysical Journal",
    year = "2018",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20180523-152301882",
    id = "record",
    issn = "0006-3495",
    doi = "10.1016/j.bpj.2017.11.2330",
    volume = "114"
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    title = "Membrane Tension and the Charge State of Cells",
    journal = "Biophysical Journal",
    year = "2018",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20180510-092357051",
    id = "record",
    issn = "0006-3495",
    doi = "10.1016/j.bpj.2017.11.203",
    volume = "114"
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    title = "The role of DNA sequence in nucleosome breathing",
    journal = "European Physical Journal E",
    year = "2017",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20171128-123653098",
    id = "record",
    issn = "1292-8941",
    doi = "10.1140/epje/i2017-11596-2",
    volume = "40",
    pmcid = "PMC7001874"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20171009-100434563,
    title = "Musings on mechanism: quest for a quark theory of proteins?",
    journal = "FASEB Journal",
    year = "2017",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20171009-100434563",
    id = "record",
    issn = "0892-6638",
    doi = "10.1096/fj.201700594",
    volume = "31"
}


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    title = "Self-consistent theory of transcriptional control in complex regulatory architectures",
    journal = "PLOS ONE",
    year = "2017",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20170717-090138223",
    id = "record",
    issn = "1932-6203",
    doi = "10.1371/journal.pone.0179235",
    volume = "12",
    pmcid = "PMC5501422"
}


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    title = "Energetic cost of building a virus",
    journal = "Proceedings of the National Academy of Sciences of the United States of America",
    year = "2017",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20170516-095417507",
    id = "record",
    issn = "0027-8424",
    doi = "10.1073/pnas.1701670114",
    volume = "114",
    pmcid = "PMC5465929"
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    title = "Monod-Wyman-Changeux Analysis of Ligand-Gated Ion Channel Mutants",
    journal = "Journal of Physical Chemistry B",
    year = "2017",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20170131-092637914",
    id = "record",
    issn = "1520-6106",
    doi = "10.1021/acs.jpcb.6b12672",
    volume = "121",
    pmcid = "PMC5551692"
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    title = "Membranes by the Numbers",
    year = "2017",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20180730-091900653",
    id = "record",
    doi = "10.48550/arXiv.1703.02066"
}


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    title = "An allosteric theory of transcription factor induction",
    year = "2017",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20170619-150117855",
    id = "record",
    doi = "10.1101/111013"
}


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    title = "The great ideas of biology: Exploration through experimentation in an undergraduate lab course",
    journal = "Molecular Biology of the Cell",
    year = "2016",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20170331-134057165",
    id = "record",
    issn = "1059-1524",
    volume = "27"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20160502-112340784,
    title = "Statistical Mechanics of Allosteric Enzymes",
    journal = "Journal of Physical Chemistry B",
    year = "2016",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20160502-112340784",
    id = "record",
    issn = "1520-6106",
    doi = "10.1021/acs.jpcb.6b01911",
    volume = "120",
    pmcid = "PMC5452729"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20160509-153942313,
    title = "Design Principles of Length Control of Cytoskeletal Structures",
    journal = "Annual Review of Biophysics",
    year = "2016",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20160509-153942313",
    id = "record",
    issn = "1936-122X",
    doi = "10.1146/annurev-biophys-070915-094206",
    volume = "45",
    pmcid = "PMC5466818"
}


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    title = "Using synthetic biology to make cells tomorrow's test tubes",
    journal = "Integrative Biology",
    year = "2016",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20160311-132630114",
    id = "record",
    issn = "1757-9694",
    doi = "10.1039/C6IB00006A",
    volume = "8",
    pmcid = "PMC4837077"
}


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    title = "SnapShot: Timescales in Cell Biology",
    journal = "Cell",
    year = "2016",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20160321-083721510",
    id = "record",
    issn = "0092-8674",
    doi = "10.1016/j.cell.2016.02.058",
    volume = "164"
}


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    title = "Predicting the impact of promoter variability on regulatory outputs",
    journal = "Scientific Reports",
    year = "2015",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20160106-065143620",
    id = "record",
    issn = "2045-2322",
    doi = "10.1038/srep18238",
    volume = "5",
    pmcid = "PMC4682146"
}


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    title = "Theory in Biology: Figure 1 or Figure 7?",
    journal = "Trends in Cell Biology",
    year = "2015",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20151130-110111581",
    id = "record",
    issn = "0962-8924",
    doi = "10.1016/j.tcb.2015.10.007",
    volume = "25",
    pmcid = "PMC4666001"
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    title = "Interplay of Protein Binding Interactions, DNA Mechanics, and Entropy in DNA Looping Kinetics",
    journal = "Biophysical Journal",
    year = "2015",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20150810-075722055",
    id = "record",
    issn = "0006-3495",
    doi = "10.1016/j.bpj.2015.06.054",
    volume = "109"
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    title = "Single-molecule analysis of RAG-mediated V(D)J DNA cleavage",
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    url = "https://resolver.caltech.edu/CaltechAUTHORS:20150324-125537305",
    id = "record",
    issn = "0027-8424",
    doi = "10.1073/pnas.1503477112",
    volume = "112",
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    title = "Napoleon Is in Equilibrium",
    journal = "Annual Review of Condensed Matter Physics",
    year = "2015",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20150409-132742605",
    id = "record",
    issn = "1947-5454",
    doi = "10.1146/annurev-conmatphys-031214-014558",
    volume = "6",
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    title = "Encyclopedia of Metagenomics",
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    year = "2015",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20170616-133655981",
    id = "record",
    isbn = "978-1-4899-7477-8",
    doi = "10.1007/978-1-4899-7478-5\_792"
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    title = "The Rate of Osmotic Downshock Determines the Survival Probability of Bacterial Mechanosensitive Channel Mutants",
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    url = "https://resolver.caltech.edu/CaltechAUTHORS:20150108-145321538",
    id = "record",
    issn = "0021-9193",
    doi = "10.1128/JB.02175-14",
    volume = "197",
    pmcid = "PMC4288683"
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    title = "The Influence of Promoter Architectures and Regulatory Motifs on Gene Expression in Escherichia coli",
    journal = "PLoS ONE",
    year = "2014",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20150129-091025277",
    id = "record",
    issn = "1932-6203",
    doi = "10.1371/journal.pone.0114347",
    volume = "9",
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    title = "Scaling of Gene Expression with Transcription-Factor Fugacity",
    journal = "Physical Review Letters",
    year = "2014",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20150219-110954794",
    id = "record",
    issn = "0031-9007",
    doi = "10.1103/PhysRevLett.113.258101",
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    title = "Promoter architecture dictates cell-to-cell variability in gene expression",
    journal = "Science",
    year = "2014",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20141223-110116617",
    id = "record",
    issn = "0036-8075",
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    title = "Modulation of DNA loop lifetimes by the free energy of loop formation",
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    issn = "0027-8424",
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    title = "The quantified cell",
    journal = "Molecular Biology of the Cell",
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    url = "https://resolver.caltech.edu/CaltechAUTHORS:20141204-100345751",
    id = "record",
    issn = "1059-1524",
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    volume = "25",
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    title = "Multiple LacI-mediated loops revealed by Bayesian statistics and tethered particle motion",
    journal = "Nucleic Acids Research",
    year = "2014",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20140224-115855856",
    id = "record",
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    doi = "10.1093/nar/gku563",
    volume = "42",
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    title = "Comparison of the theoretical and real-world evolutionary potential of a genetic circuit",
    journal = "Physical Biology",
    year = "2014",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20140509-111341446",
    id = "record",
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    doi = "10.1088/1478-3975/11/2/026005",
    volume = "11",
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    title = "The Transcription Factor Titration Effect Dictates Level of Gene Expression",
    journal = "Cell",
    year = "2014",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20140320-130336013",
    id = "record",
    issn = "0092-8674",
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    volume = "156",
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    title = "Single Molecule Dynamics Governing the Initiation of V(D)J Recombination",
    journal = "Biophysical Journal",
    year = "2014",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20140710-102048609",
    id = "record",
    issn = "0006-3495",
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    volume = "106"
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    title = "Time-Resolved Plasmid Counting by Way of Transcription Factor Sequestration",
    journal = "Biophysical Journal",
    year = "2014",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20140710-091408000",
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    title = "The Transcription Factor Titration Effect Dictates Level of Gene Expression",
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    year = "2014",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20140710-094648257",
    id = "record",
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    doi = "10.1016/j.bpj.2013.11.4483",
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    title = "Promoter Architecture Dictates Variability in Gene Expression",
    journal = "Biophysical Journal",
    year = "2014",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20140710-080835668",
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    title = "The Rate of Osmotic Shock Determines Bacterial Survival",
    journal = "Biophysical Journal",
    year = "2014",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20140710-094352199",
    id = "record",
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    title = "Dynamic Gene Expression and Design Principles of Viral Infection Pathway",
    journal = "Biophysical Journal",
    year = "2014",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20140710-084044769",
    id = "record",
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    doi = "10.1016/j.bpj.2013.11.2111",
    volume = "106"
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    title = "Multiple Lac-Mediated Loops Revealed by Bayesian Statistics and Tethered Particle Motion",
    journal = "Biophysical Journal",
    year = "2014",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20140710-100757843",
    id = "record",
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    title = "Dissecting the Role of Ferrous Iron in Pseudomonas Aeruginosa Gene Regulation",
    journal = "Biophysical Journal",
    year = "2014",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20140710-081414989",
    id = "record",
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    doi = "10.1016/j.bpj.2013.11.2115",
    volume = "106"
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    title = "Identification and Analysis of the Transcriptional Regulatory Networks Governing Mechanosensitive Channels in E. coli",
    journal = "Biophysical Journal",
    year = "2014",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20140710-104425641",
    id = "record",
    issn = "0006-3495",
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    volume = "106"
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    title = "Statistical mechanical model of coupled transcription from multiple promoters due to transcription factor titration",
    journal = "Physical Review E",
    year = "2014",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20140404-102949606",
    id = "record",
    issn = "1539-3755",
    doi = "10.1103/PhysRevE.89.012702",
    volume = "89",
    pmcid = "PMC4043999"
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    title = "Distinct structural features of TFAM drive mitochondrial DNA packaging versus transcriptional activation",
    journal = "Nature Communications",
    year = "2014",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20140326-113402727",
    id = "record",
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    title = "The Feynman Lectures on Physics",
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    url = "https://resolver.caltech.edu/CaltechAUTHORS:20140103-091544508",
    id = "record",
    issn = "0028-0836",
    doi = "10.1038/504030a",
    volume = "504"
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    title = "DNA sequence-dependent mechanics and protein-assisted bending in repressor-mediated loop formation",
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    title = "Poly(dA:dT)-Rich DNAs Are Highly Flexible in the Context
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    volume = "101",
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    title = "Analysis of DNA Looping Kinetics in Tethered Particle Motion Experiments using Hidden Markov Models",
    journal = "Biophysical Journal",
    year = "2013",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20130429-081637377",
    id = "record",
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    volume = "104"
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    title = "Bacteria are Stressed Out Too: The Physics of Mechanosensation",
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    title = "Theoretical and Experimental Dissection of DNA Loop-Mediated Repression",
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    id = "record",
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    doi = "10.1103/PhysRevLett.110.018101",
    volume = "110",
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    title = "Interdisciplinary Graduate Training in Teaching Labs",
    journal = "Science",
    year = "2012",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20130118-102317460",
    id = "record",
    issn = "0036-8075",
    doi = "10.1126/science.1216570",
    volume = "338",
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    title = "Tuning Promoter Strength through RNA Polymerase Binding Site Design in Escherichia coli",
    journal = "PLoS Computational Biology",
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    url = "https://resolver.caltech.edu/CaltechAUTHORS:20130211-115816554",
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    issn = "1553-734X",
    doi = "10.1371/journal.pcbi.1002811",
    volume = "8",
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    title = "Sequence Dependence of Transcription Factor-Mediated DNA Looping",
    journal = "Nucleic Acids Research",
    year = "2012",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20120709-133545138",
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    title = "A single-molecule view of protein action at a distance",
    journal = "Protein Science",
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    url = "https://resolver.caltech.edu/CaltechAUTHORS:20120827-142257698",
    id = "record",
    issn = "0961-8368",
    volume = "21"
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    title = "Operator Sequence Alters Gene Expression Independently of Transcription Factor Occupancy in Bacteria",
    journal = "Cell Reports",
    year = "2012",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20120814-102205172",
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    title = "A Single-Molecule Hershey-Chase Experiment",
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    url = "https://resolver.caltech.edu/CaltechAUTHORS:20120716-083157294",
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    title = "Focus on the physics of the cell membrane",
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    id = "record",
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    volume = "14"
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    title = "Single-Cell Census of Mechanosensitive Channels in Living Bacteria",
    journal = "PLoS ONE",
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    url = "https://resolver.caltech.edu/CaltechAUTHORS:20120523-100035590",
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    issn = "1932-6203",
    doi = "10.1371/journal.pone.0033077",
    volume = "7",
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    id = "record",
    issn = "1553-734X",
    doi = "10.1371/journal.pcbi.1002431",
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    url = "https://resolver.caltech.edu/CaltechAUTHORS:20110909-100811989",
    id = "record",
    issn = "0028-0836",
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    title = "Hierarchical modeling in the mechanics of materials",
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    id = "record",
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    title = "Quasicontinuum models of fracture and plasticity",
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