<h1>Phillips, Rob</h1> <h2>Article from <a href="https://authors.library.caltech.edu">CaltechAUTHORS</a></h2> <ul> <li>Mahmoudabadi, Gita and Homyk, Kelsey, el al. (2024) <a href="https://authors.library.caltech.edu/records/5ahgv-2v151">Machine learning models can identify individuals based on a resident oral bacteriophage family</a>; Frontiers in Microbiomes; Vol. 3; 1408203; <a href="https://doi.org/10.3389/frmbi.2024.1408203">10.3389/frmbi.2024.1408203</a></li> <li>Hueschen, Christina L. and Dunn, Alexander R., el al. (2023) <a href="https://authors.library.caltech.edu/records/nbfep-58z27">Wildebeest herds on rolling hills: Flocking on arbitrary curved surfaces</a>; Physical Review E; Vol. 108; No. 2; 024610; <a href="https://doi.org/10.1103/physreve.108.024610">10.1103/physreve.108.024610</a></li> <li>Banks, Rachel A. and Galstyan, Vahe, el al. (2023) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20230510-982977000.2">Motor processivity and speed determine structure and dynamics of microtubule-motor assemblies</a>; eLife; Vol. 12; Art. No. e79402; PMCID PMC10014072; <a href="https://doi.org/10.7554/elife.79402">10.7554/elife.79402</a></li> <li>Suresh, Pooja and Galstyan, Vahe, el al. (2022) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20221128-494241100.20">Modeling and mechanical perturbations reveal how spatially regulated anchorage gives rise to spatially distinct mechanics across the mammalian spindle</a>; eLife; Vol. 11; Art. No. e79558; PMCID PMC9642996; <a href="https://doi.org/10.7554/elife.79558">10.7554/elife.79558</a></li> <li>Chure, Griffin and Banks, Rachel A., el al. (2022) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20221031-575177800.5">Anthroponumbers.org: A quantitative database of human impacts on Planet Earth</a>; Patterns; Vol. 3; No. 9; Art. No. 100552; PMCID PMC9481956; <a href="https://doi.org/10.1016/j.patter.2022.100552">10.1016/j.patter.2022.100552</a></li> <li>Larios, David A. and Phillips, Rob, el al. (2022) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20220422-225704323">Reconstituting the nonequilibrium biophysics of the LECA cytoskeleton in active matter</a>; Biophysical Journal; Vol. 121; No. 3; 521a; <a href="https://doi.org/10.1016/j.bpj.2021.11.2744">10.1016/j.bpj.2021.11.2744</a></li> <li>Duarte, Ana I. and Jin Lee, Heun, el al. (2022) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20220422-296339700">Measuring energy consumption through space and time in an active matter system of cytoskeletal motors and filaments</a>; Biophysical Journal; Vol. 121; No. 3; 521a-522a; <a href="https://doi.org/10.1016/j.bpj.2021.11.2745">10.1016/j.bpj.2021.11.2745</a></li> <li>Suresh, Pooja and Galstyan, Vahe, el al. (2022) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20220422-231443172">Connections distributed within 3 μm of chromosomes are necessary and sufficient for the kinetochore-fiber's robust anchorage in the mammalian spindle</a>; Biophysical Journal; Vol. 121; No. 3; 448a-449a; <a href="https://doi.org/10.1016/j.bpj.2021.11.536">10.1016/j.bpj.2021.11.536</a></li> <li>Hueschen, Christina and Segev Zarko, Li-av, el al. (2022) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20220425-141009622">Distinct self-organized actin patterns explain diverse parasite gliding modes</a>; Biophysical Journal; Vol. 121; No. 3; 314a; <a href="https://doi.org/10.1016/j.bpj.2021.11.1183">10.1016/j.bpj.2021.11.1183</a></li> <li>Salmon, Gabe and Phillips, Rob (2022) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20220422-225130615">Reproducibility, stochasticity, and geometry in a lattice of cross-feeding microbial cells</a>; Biophysical Journal; Vol. 121; No. 3; 120a; <a href="https://doi.org/10.1016/j.bpj.2021.11.2086">10.1016/j.bpj.2021.11.2086</a></li> <li>Tadmor, Arbel D. and Phillips, Rob (2022) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20220201-508256000">MCRL: using a reference library to compress a metagenome into a non-redundant list of sequences, considering viruses as a case study</a>; Bioinformatics; Vol. 38; No. 3; 631-647; PMCID PMC10060711; <a href="https://doi.org/10.1093/bioinformatics/btab703">10.1093/bioinformatics/btab703</a></li> <li>Hueschen, Christina and Segev Zarko, Li-Av, el al. (2021) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20220512-144706094">Actin Organization and Dynamics in Motile Toxoplasma Gondii Parasites</a>; American Journal of Tropical Medicine and Hygiene; Vol. 105; No. 5; 448-449; <a href="https://doi.org/10.4269/ajtmh.abstract2021">10.4269/ajtmh.abstract2021</a></li> <li>Belliveau, Nathan M. and Chure, Griffin, el al. (2021) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20201021-080615473">Fundamental limits on the rate of bacterial growth and their influence on proteomic composition</a>; Cell Systems; Vol. 12; No. 9; 924-944; PMCID PMC8460600; <a href="https://doi.org/10.1016/j.cels.2021.06.002">10.1016/j.cels.2021.06.002</a></li> <li>Qu, Zijie and Schildknecht, Dominik, el al. (2021) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20201110-143708446">Persistent fluid flows defined by active matter boundaries</a>; Communications Physics; Vol. 4; Art. No. 198; <a href="https://doi.org/10.1038/s42005-021-00703-3">10.1038/s42005-021-00703-3</a></li> <li>Sender, Ron and Bar-On, Yinon M., el al. (2021) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20201118-151353187">The total number and mass of SARS-CoV-2 virions</a>; Proceedings of the National Academy of Sciences of the United States of America; Vol. 118; No. 25; Art. No. e2024815118; PMCID PMC8237675; <a href="https://doi.org/10.1073/pnas.2024815118">10.1073/pnas.2024815118</a></li> <li>Phillips, Rob (2021) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20210629-200149422">Schrödinger's What Is Life? at 75</a>; Cell Systems; Vol. 12; No. 6; 465-476; <a href="https://doi.org/10.1016/j.cels.2021.05.013">10.1016/j.cels.2021.05.013</a></li> <li>Galstyan, Vahe and Suresh, Pooja, el al. (2021) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20210503-101747249">Understanding the Mechanisms that Give Rise to the Mammalian Spindle's Response to Force using Theory and Microneedle Manipulation</a>; Biophysical Journal; Vol. 120; No. 3; 347A; <a href="https://doi.org/10.1016/j.bpj.2020.11.2158">10.1016/j.bpj.2020.11.2158</a></li> <li>Morrison, Muir and Razo-Mejia, Manuel, el al. (2021) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20200615-130249775">Reconciling kinetic and thermodynamic models of bacterial transcription</a>; PLOS Computational Biology; Vol. 17; No. 1; Art. No. e1008572; PMCID PMC7845990; <a href="https://doi.org/10.1371/journal.pcbi.1008572">10.1371/journal.pcbi.1008572</a></li> <li>Yu, Timothy C. and Liu, Winnie L., el al. (2021) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20200203-092359628">Multiplexed characterization of rationally designed promoter architectures deconstructs combinatorial logic for IPTG-inducible systems</a>; Nature Communications; Vol. 12; Art. No. 325; PMCID PMC7804116; <a href="https://doi.org/10.1038/s41467-020-20094-3">10.1038/s41467-020-20094-3</a></li> <li>Galstyan, Vahe and Husain, Kabir, el al. (2020) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20200526-121021095">Proofreading through spatial gradients</a>; eLife; Vol. 9; Art. No. e60415; <a href="https://doi.org/10.7554/eLife.60415">10.7554/eLife.60415</a></li> <li>Ireland, William T. and Beeler, Suzannah M., el al. (2020) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20200121-102719123">Deciphering the regulatory genome of Escherichia coli, one hundred promoters at a time</a>; eLife; Vol. 2020; No. 9; Art. No. e55308; PMCID PMC7567609; <a href="https://doi.org/10.7554/eLife.55308">10.7554/eLife.55308</a></li> <li>Razo-Mejia, Manuel and Marzen, Sarah, el al. (2020) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20190402-080512452">First-principles prediction of the information processing capacity of a simple genetic circuit</a>; Physical Review E; Vol. 102; No. 2; Art. No. 022404; <a href="https://doi.org/10.1103/PhysRevE.102.022404">10.1103/PhysRevE.102.022404</a></li> <li>Hirokawa, Soichi and Chure, Griffin, el al. (2020) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20191007-074542895">Sequence-Dependent Dynamics of Synthetic and Endogenous RSSs in V(D)J Recombination</a>; Nucleic Acids Research; Vol. 48; No. 12; 6726-6739; PMCID PMC7337519; <a href="https://doi.org/10.1093/nar/gkaa418">10.1093/nar/gkaa418</a></li> <li>Laxhuber, Kathrin S. and Morrison, Muir J., el al. (2020) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20191202-142214486">Theoretical investigation of a genetic switch for metabolic adaptation</a>; PLoS ONE; Vol. 15; No. 5; Art. No. e0226453; PMCID PMC7205307; <a href="https://doi.org/10.1371/journal.pone.0226453">10.1371/journal.pone.0226453</a></li> <li>Bar-On, Yinon M. and Flamholz, Avi, el al. (2020) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20200331-215659202">SARS-CoV-2 (COVID-19) by the numbers</a>; eLife; Vol. 9; Art. No. e57309; PMCID PMC7224694; <a href="https://doi.org/10.7554/elife.57309">10.7554/elife.57309</a></li> <li>Banks, Rachel and Lee, Heun Jin, el al. (2020) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20200210-111806006">Bridging Kinesin Properties with System-scale Characteristics of Microtubule-Motor Assemblies</a>; Biophysical Journal; Vol. 118; No. 3; 176a-177a; <a href="https://doi.org/10.1016/j.bpj.2019.11.1081">10.1016/j.bpj.2019.11.1081</a></li> <li>Galstyan, Vahe and Husain, Kabir, el al. (2020) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20200210-085326975">Kinetic Proofreading using Substrate Gradients and Enzyme Diffusion</a>; Biophysical Journal; Vol. 118; No. 3; 573a-574a; <a href="https://doi.org/10.1016/j.bpj.2019.11.3118">10.1016/j.bpj.2019.11.3118</a></li> <li>McCarty, Nicholas S. and Razo-Mejia, Manuel, el al. (2020) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20200210-095852686">Genetic Barcodes Enable Quantitative Mapping of Operator Mutants to Gene Expression</a>; Biophysical Journal; Vol. 118; No. 3; 611a; <a href="https://doi.org/10.1016/j.bpj.2019.11.3298">10.1016/j.bpj.2019.11.3298</a></li> <li>Phillips, Rob (2020) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20200210-092745829">Schrodinger's "What is Life" At 75: The Physical Aspects of the Living Cell Revisited</a>; Biophysical Journal; Vol. 118; No. 3; 2a; <a href="https://doi.org/10.1016/j.bpj.2019.11.204">10.1016/j.bpj.2019.11.204</a></li> <li>Salmon, Gabe and Phillips, Rob (2020) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20200210-111428049">Modeling Microbial Interactions across Nutritional Environments using Maximum Entropy</a>; Biophysical Journal; Vol. 118; No. 3; 347a; <a href="https://doi.org/10.1016/j.bpj.2019.11.2004">10.1016/j.bpj.2019.11.2004</a></li> <li>Chure, Griffin and Phillips, Rob (2020) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20200210-093408528">The Molecular Biophysics of Adaptation</a>; Biophysical Journal; Vol. 118; No. 3; 545a; <a href="https://doi.org/10.1016/j.bpj.2019.11.2983">10.1016/j.bpj.2019.11.2983</a></li> <li>Galstyan, Vahe and Phillips, Rob (2019) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20191202-151154014">Allostery and Kinetic Proofreading</a>; Journal of Physical Chemistry B; Vol. 123; No. 51; 10990-11002; PMCID PMC6995354; <a href="https://doi.org/10.1021/acs.jpcb.9b08380">10.1021/acs.jpcb.9b08380</a></li> <li>Einav, Tal and Yazdi, Shahrzad, el al. (2019) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20191023-142258650">Harnessing Avidity: Quantifying the Entropic and Energetic Effects of Linker Length and Rigidity for Multivalent Binding of Antibodies to HIV-1</a>; Cell Systems; Vol. 9; No. 5; 466-474; PMCID PMC6892280; <a href="https://doi.org/10.1016/j.cels.2019.09.007">10.1016/j.cels.2019.09.007</a></li> <li>Chure, Griffin and Razo-Mejia, Manuel, el al. (2019) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20190826-153157241">Predictive shifts in free energy couple mutations to their phenotypic consequences</a>; Proceedings of the National Academy of Sciences of the United States of America; Vol. 116; No. 37; 18275-18284; PMCID PMC6744869; <a href="https://doi.org/10.1073/pnas.1907869116">10.1073/pnas.1907869116</a></li> <li>Ross, Tyler D. and Lee, Heun Jin, el al. (2019) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20190102-092232993">Controlling Organization and Forces in Active Matter Through Optically-Defined Boundaries</a>; Nature; Vol. 572; No. 7768; 224-229; PMCID PMC6719720; <a href="https://doi.org/10.1038/s41586-019-1447-1">10.1038/s41586-019-1447-1</a></li> <li>Einav, Tal and Phillips, Rob (2019) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20190405-094702005">How the avidity of polymerase binding to the –35/–10 promoter sites affects gene expression</a>; Proceedings of the National Academy of Sciences of the United States of America; Vol. 116; No. 27; 13340-13345; PMCID PMC6613100; <a href="https://doi.org/10.1073/pnas.1905615116">10.1073/pnas.1905615116</a></li> <li>Wadhwa, Navish and Phillips, Rob, el al. (2019) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20190529-152829578">Torque-dependent remodeling of the bacterial flagellar motor</a>; Proceedings of the National Academy of Sciences of the United States of America; Vol. 116; No. 24; 11764-11769; PMCID PMC6576217; <a href="https://doi.org/10.1073/pnas.1904577116">10.1073/pnas.1904577116</a></li> <li>Phillips, Rob and Belliveau, Nathan M., el al. (2019) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20190520-085650396">Figure 1 Theory Meets Figure 2 Experiments in the Study of Gene Expression</a>; Annual Review of Biophysics; Vol. 48; 121-163; <a href="https://doi.org/10.1146/annurev-biophys-052118-115525">10.1146/annurev-biophys-052118-115525</a></li> <li>Galstyan, Vahe and Funk, Luke, el al. (2019) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20190102-135256302">Combinatorial Control through Allostery</a>; Journal of Physical Chemistry B; Vol. 123; No. 13; 2792-2800; PMCID PMC6467274; <a href="https://doi.org/10.1021/acs.jpcb.8b12517">10.1021/acs.jpcb.8b12517</a></li> <li>Foster, Peter J. and Razo-Mejia, Manuel, el al. (2019) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20190311-132254175">Measuring the Energetic Costs of Embryonic Development</a>; Developmental Cell; Vol. 48; No. 5; 591-592; <a href="https://doi.org/10.1016/j.devcel.2019.02.016">10.1016/j.devcel.2019.02.016</a></li> <li>Hueschen, Christina L. and Galstyan, Vahe, el al. (2019) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20190207-155651541">Microtubule End-Clustering Maintains a Steady-State Spindle Shape</a>; Current Biology; Vol. 29; No. 4; 700-708; PMCID PMC6383811; <a href="https://doi.org/10.1016/j.cub.2019.01.016">10.1016/j.cub.2019.01.016</a></li> <li>Barnes, Stephanie L. and Belliveau, Nathan M., el al. (2019) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20181030-132608570">Mapping DNA sequence to transcription factor binding energy in vivo</a>; PLoS Computational Biology; Vol. 15; No. 2; Art. No. e1006226; PMCID PMC6375646; <a href="https://doi.org/10.1371/journal.pcbi.1006226">10.1371/journal.pcbi.1006226</a></li> <li>Forcier, Talitha L. and Ayaz, Andalus, el al. (2018) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20181128-093526476">Measuring cis-regulatory energetics in living cells using allelic manifolds</a>; eLife; Vol. 7; Art. No. e40618; <a href="https://doi.org/10.7554/eLife.40618">10.7554/eLife.40618</a></li> <li>Chure, Griffin and Lee, Heun Jin, el al. (2018) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20180917-125104010">Connecting the dots between mechanosensitive channel abundance, osmotic shock, and survival at single-cell resolution</a>; Journal of Bacteriology; Vol. 200; No. 23; Art. No. e00460-18; PMCID PMC6222198; <a href="https://doi.org/10.1128/jb.00460-18">10.1128/jb.00460-18</a></li> <li>Einav, Tal and Duque, Julia, el al. (2018) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20181009-105623284">Theoretical analysis of inducer and operator binding for cyclic-AMP receptor protein mutants</a>; PLoS ONE; Vol. 13; No. 9; Art. No. e0204275; PMCID PMC6157895; <a href="https://doi.org/10.1371/journal.pone.0204275">10.1371/journal.pone.0204275</a></li> <li>Bar-On, Yinon M. and Phillips, Rob, el al. (2018) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20180521-155526693">The biomass distribution on Earth</a>; Proceedings of the National Academy of Sciences of the United States of America; Vol. 115; No. 25; 6506-6511; PMCID PMC6016768; <a href="https://doi.org/10.1073/pnas.1711842115">10.1073/pnas.1711842115</a></li> <li>Belliveau, Nathan M. and Barnes, Stephanie L., el al. (2018) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20180507-083945479">Systematic approach for dissecting the molecular mechanisms of transcriptional regulation in bacteria</a>; Proceedings of the National Academy of Sciences of the United States of America; Vol. 115; No. 21; E4796-E4805; PMCID PMC6003448; <a href="https://doi.org/10.1073/pnas.1722055115">10.1073/pnas.1722055115</a></li> <li>Razo-Mejia, Manuel and Barnes, Stephanie L., el al. (2018) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20171204-090149985">Tuning transcriptional regulation through signaling: A predictive theory of allosteric induction</a>; Cell Systems; Vol. 6; No. 4; 456-469; PMCID PMC5991102; <a href="https://doi.org/10.1016/j.cels.2018.02.004">10.1016/j.cels.2018.02.004</a></li> <li>Mahmoudabadi, Gita and Phillips, Rob (2018) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20180409-140949316">Research: A comprehensive and quantitative exploration of thousands of viral genomes</a>; eLife; Vol. 7; Art. No. e31955; PMCID PMC5908442; <a href="https://doi.org/10.7554/eLife.31955">10.7554/eLife.31955</a></li> <li>Chen, Yi-Ju and Wu, David, el al. (2018) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20180501-112937401">Two-Stage Dynamics of In Vivo Bacteriophage Genome Ejection</a>; Physical Review X; Vol. 8; No. 2; Art. No. 021029; <a href="https://doi.org/10.1103/PhysRevX.8.021029">10.1103/PhysRevX.8.021029</a></li> <li>Phillips, Rob (2018) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20180510-092357051">Membrane Tension and the Charge State of Cells</a>; Biophysical Journal; Vol. 114; No. 3; 29a; <a href="https://doi.org/10.1016/j.bpj.2017.11.203">10.1016/j.bpj.2017.11.203</a></li> <li>Hirokawa, Soichi and Belliveau, Nathan M., el al. (2018) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20180510-124207785">Skewing the Playing Field: A Single-Molecule Study on how RSS Sequence Influences Gene Segment Selection</a>; Biophysical Journal; Vol. 114; No. 3; 86a; <a href="https://doi.org/10.1016/j.bpj.2017.11.511">10.1016/j.bpj.2017.11.511</a></li> <li>Belliveau, Nathan M. and Barnes, Stephanie L., el al. (2018) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20180523-143351877">A Systematic and Scalable Approach for Dissecting the Molecular Mechanisms of Transcriptional Regulation in Bacteria</a>; Biophysical Journal; Vol. 114; No. 3; 151A; <a href="https://doi.org/10.1016/j.bpj.2017.11.849">10.1016/j.bpj.2017.11.849</a></li> <li>Einav, Tal and Duque, Julia, el al. (2018) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20180523-152301882">Theoretical Analysis of Allosteric and Operator Binding for Cyclic-AMP Receptor Protein Mutants</a>; Biophysical Journal; Vol. 114; No. 3; 420A-421A; <a href="https://doi.org/10.1016/j.bpj.2017.11.2330">10.1016/j.bpj.2017.11.2330</a></li> <li>Culkin, Jamie and de Bruin, Lennart, el al. (2017) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20171128-123653098">The role of DNA sequence in nucleosome breathing</a>; European Physical Journal E; Vol. 40; No. 11; Art. 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