@article{https://authors.library.caltech.edu/records/5ahgv-2v151,
    title = "Machine learning models can identify individuals based on a resident oral bacteriophage family",
    journal = "Frontiers in Microbiomes",
    year = "2024",
    url = "https://authors.library.caltech.edu/records/5ahgv-2v151",
    id = "record",
    issn = "2813-4338",
    doi = "10.3389/frmbi.2024.1408203",
    volume = "3"
}


@article{https://authors.library.caltech.edu/records/nbfep-58z27,
    title = "Wildebeest herds on rolling hills: Flocking on arbitrary curved surfaces",
    journal = "Physical Review E",
    year = "2023",
    url = "https://authors.library.caltech.edu/records/nbfep-58z27",
    id = "record",
    issn = "2470-0045",
    doi = "10.1103/physreve.108.024610",
    volume = "108"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20230510-982977000.2,
    title = "Motor processivity and speed determine structure and dynamics of microtubule-motor assemblies",
    journal = "eLife",
    year = "2023",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20230510-982977000.2",
    id = "record",
    issn = "2050-084X",
    doi = "10.7554/elife.79402",
    volume = "12",
    pmcid = "PMC10014072"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20221128-494241100.20,
    title = "Modeling and mechanical perturbations reveal how spatially regulated anchorage gives rise to spatially distinct mechanics across the mammalian spindle",
    journal = "eLife",
    year = "2022",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20221128-494241100.20",
    id = "record",
    issn = "2050-084X",
    doi = "10.7554/elife.79558",
    volume = "11",
    pmcid = "PMC9642996"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20221031-575177800.5,
    title = "Anthroponumbers.org: A quantitative database of human impacts on Planet Earth",
    journal = "Patterns",
    year = "2022",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20221031-575177800.5",
    id = "record",
    issn = "2666-3899",
    doi = "10.1016/j.patter.2022.100552",
    volume = "3",
    pmcid = "PMC9481956"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20220422-225130615,
    title = "Reproducibility, stochasticity, and geometry in a lattice of cross-feeding microbial cells",
    journal = "Biophysical Journal",
    year = "2022",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20220422-225130615",
    id = "record",
    issn = "0006-3495",
    doi = "10.1016/j.bpj.2021.11.2086",
    volume = "121"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20220422-296339700,
    title = "Measuring energy consumption through space and time in an active matter system of cytoskeletal motors and filaments",
    journal = "Biophysical Journal",
    year = "2022",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20220422-296339700",
    id = "record",
    issn = "0006-3495",
    doi = "10.1016/j.bpj.2021.11.2745",
    volume = "121"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20220422-225704323,
    title = "Reconstituting the nonequilibrium biophysics of the LECA cytoskeleton in active matter",
    journal = "Biophysical Journal",
    year = "2022",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20220422-225704323",
    id = "record",
    issn = "0006-3495",
    doi = "10.1016/j.bpj.2021.11.2744",
    volume = "121"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20220422-231443172,
    title = "Connections distributed within 3 μm of chromosomes are necessary and sufficient for the kinetochore-fiber's robust anchorage in the mammalian spindle",
    journal = "Biophysical Journal",
    year = "2022",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20220422-231443172",
    id = "record",
    issn = "0006-3495",
    doi = "10.1016/j.bpj.2021.11.536",
    volume = "121"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20220425-141009622,
    title = "Distinct self-organized actin patterns explain diverse parasite gliding modes",
    journal = "Biophysical Journal",
    year = "2022",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20220425-141009622",
    id = "record",
    issn = "0006-3495",
    doi = "10.1016/j.bpj.2021.11.1183",
    volume = "121"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20220201-508256000,
    title = "MCRL: using a reference library to compress a metagenome into a non-redundant list of sequences, considering viruses as a case study",
    journal = "Bioinformatics",
    year = "2022",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20220201-508256000",
    id = "record",
    issn = "1367-4803",
    doi = "10.1093/bioinformatics/btab703",
    volume = "38",
    pmcid = "PMC10060711"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20220512-144706094,
    title = "Actin Organization and Dynamics in Motile Toxoplasma Gondii Parasites",
    journal = "American Journal of Tropical Medicine and Hygiene",
    year = "2021",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20220512-144706094",
    id = "record",
    issn = "0002-9637",
    doi = "10.4269/ajtmh.abstract2021",
    volume = "105"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20201021-080615473,
    title = "Fundamental limits on the rate of bacterial growth and their influence on proteomic composition",
    journal = "Cell Systems",
    year = "2021",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20201021-080615473",
    id = "record",
    issn = "2405-4712",
    doi = "10.1016/j.cels.2021.06.002",
    volume = "12",
    pmcid = "PMC8460600"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20201110-143708446,
    title = "Persistent fluid flows defined by active matter boundaries",
    journal = "Communications Physics",
    year = "2021",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20201110-143708446",
    id = "record",
    issn = "2399-3650",
    doi = "10.1038/s42005-021-00703-3",
    volume = "4"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20201118-151353187,
    title = "The total number and mass of SARS-CoV-2 virions",
    journal = "Proceedings of the National Academy of Sciences of the United States of America",
    year = "2021",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20201118-151353187",
    id = "record",
    issn = "0027-8424",
    doi = "10.1073/pnas.2024815118",
    volume = "118",
    pmcid = "PMC8237675"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20210629-200149422,
    title = "Schrödinger's What Is Life? at 75",
    journal = "Cell Systems",
    year = "2021",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20210629-200149422",
    id = "record",
    issn = "2405-4712",
    doi = "10.1016/j.cels.2021.05.013",
    volume = "12"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20210503-101747249,
    title = "Understanding the Mechanisms that Give Rise to the Mammalian Spindle's Response to Force using Theory and Microneedle Manipulation",
    journal = "Biophysical Journal",
    year = "2021",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20210503-101747249",
    id = "record",
    issn = "0006-3495",
    doi = "10.1016/j.bpj.2020.11.2158",
    volume = "120"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20200615-130249775,
    title = "Reconciling kinetic and thermodynamic models of bacterial transcription",
    journal = "PLOS Computational Biology",
    year = "2021",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20200615-130249775",
    id = "record",
    issn = "1553-7358",
    doi = "10.1371/journal.pcbi.1008572",
    volume = "17",
    pmcid = "PMC7845990"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20200203-092359628,
    title = "Multiplexed characterization of rationally designed promoter architectures deconstructs combinatorial logic for IPTG-inducible systems",
    journal = "Nature Communications",
    year = "2021",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20200203-092359628",
    id = "record",
    issn = "2041-1723",
    doi = "10.1038/s41467-020-20094-3",
    volume = "12",
    pmcid = "PMC7804116"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20200526-121021095,
    title = "Proofreading through spatial gradients",
    journal = "eLife",
    year = "2020",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20200526-121021095",
    id = "record",
    issn = "2050-084X",
    doi = "10.7554/eLife.60415",
    volume = "9"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20200121-102719123,
    title = "Deciphering the regulatory genome of Escherichia coli, one hundred promoters at a time",
    journal = "eLife",
    year = "2020",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20200121-102719123",
    id = "record",
    issn = "2050-084X",
    doi = "10.7554/eLife.55308",
    volume = "2020",
    pmcid = "PMC7567609"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20190402-080512452,
    title = "First-principles prediction of the information processing capacity of a simple genetic circuit",
    journal = "Physical Review E",
    year = "2020",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20190402-080512452",
    id = "record",
    issn = "2470-0045",
    doi = "10.1103/PhysRevE.102.022404",
    volume = "102"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20191007-074542895,
    title = "Sequence-Dependent Dynamics of Synthetic and Endogenous RSSs in V(D)J Recombination",
    journal = "Nucleic Acids Research",
    year = "2020",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20191007-074542895",
    id = "record",
    issn = "0305-1048",
    doi = "10.1093/nar/gkaa418",
    volume = "48",
    pmcid = "PMC7337519"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20191202-142214486,
    title = "Theoretical investigation of a genetic switch for metabolic adaptation",
    journal = "PLoS ONE",
    year = "2020",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20191202-142214486",
    id = "record",
    issn = "1932-6203",
    doi = "10.1371/journal.pone.0226453",
    volume = "15",
    pmcid = "PMC7205307"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20200331-215659202,
    title = "SARS-CoV-2 (COVID-19) by the numbers",
    journal = "eLife",
    year = "2020",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20200331-215659202",
    id = "record",
    issn = "2050-084X",
    doi = "10.7554/elife.57309",
    volume = "9",
    pmcid = "PMC7224694"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20200210-092745829,
    title = {Schrodinger's "What is Life" At 75: The Physical Aspects of the Living Cell Revisited},
    journal = "Biophysical Journal",
    year = "2020",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20200210-092745829",
    id = "record",
    issn = "0006-3495",
    doi = "10.1016/j.bpj.2019.11.204",
    volume = "118"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20200210-085326975,
    title = "Kinetic Proofreading using Substrate Gradients and Enzyme Diffusion",
    journal = "Biophysical Journal",
    year = "2020",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20200210-085326975",
    id = "record",
    issn = "0006-3495",
    doi = "10.1016/j.bpj.2019.11.3118",
    volume = "118"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20200210-111428049,
    title = "Modeling Microbial Interactions across Nutritional Environments using Maximum Entropy",
    journal = "Biophysical Journal",
    year = "2020",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20200210-111428049",
    id = "record",
    issn = "0006-3495",
    doi = "10.1016/j.bpj.2019.11.2004",
    volume = "118"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20200210-095852686,
    title = "Genetic Barcodes Enable Quantitative Mapping of Operator Mutants to Gene Expression",
    journal = "Biophysical Journal",
    year = "2020",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20200210-095852686",
    id = "record",
    issn = "0006-3495",
    doi = "10.1016/j.bpj.2019.11.3298",
    volume = "118"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20200210-111806006,
    title = "Bridging Kinesin Properties with System-scale Characteristics of Microtubule-Motor Assemblies",
    journal = "Biophysical Journal",
    year = "2020",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20200210-111806006",
    id = "record",
    issn = "0006-3495",
    doi = "10.1016/j.bpj.2019.11.1081",
    volume = "118"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20200210-093408528,
    title = "The Molecular Biophysics of Adaptation",
    journal = "Biophysical Journal",
    year = "2020",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20200210-093408528",
    id = "record",
    issn = "0006-3495",
    doi = "10.1016/j.bpj.2019.11.2983",
    volume = "118"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20191202-151154014,
    title = "Allostery and Kinetic Proofreading",
    journal = "Journal of Physical Chemistry B",
    year = "2019",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20191202-151154014",
    id = "record",
    issn = "1520-6106",
    doi = "10.1021/acs.jpcb.9b08380",
    volume = "123",
    pmcid = "PMC6995354"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20191023-142258650,
    title = "Harnessing Avidity: Quantifying the Entropic and Energetic Effects of Linker Length and Rigidity for Multivalent Binding of Antibodies to HIV-1",
    journal = "Cell Systems",
    year = "2019",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20191023-142258650",
    id = "record",
    issn = "2405-4712",
    doi = "10.1016/j.cels.2019.09.007",
    volume = "9",
    pmcid = "PMC6892280"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20190826-153157241,
    title = "Predictive shifts in free energy couple mutations to their phenotypic consequences",
    journal = "Proceedings of the National Academy of Sciences of the United States of America",
    year = "2019",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20190826-153157241",
    id = "record",
    issn = "0027-8424",
    doi = "10.1073/pnas.1907869116",
    volume = "116",
    pmcid = "PMC6744869"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20190102-092232993,
    title = "Controlling Organization and Forces in Active Matter Through Optically-Defined Boundaries",
    journal = "Nature",
    year = "2019",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20190102-092232993",
    id = "record",
    issn = "0028-0836",
    doi = "10.1038/s41586-019-1447-1",
    volume = "572",
    pmcid = "PMC6719720"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20190405-094702005,
    title = "How the avidity of polymerase binding to the –35/–10 promoter sites affects gene expression",
    journal = "Proceedings of the National Academy of Sciences of the United States of America",
    year = "2019",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20190405-094702005",
    id = "record",
    issn = "0027-8424",
    doi = "10.1073/pnas.1905615116",
    volume = "116",
    pmcid = "PMC6613100"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20190529-152829578,
    title = "Torque-dependent remodeling of the bacterial flagellar motor",
    journal = "Proceedings of the National Academy of Sciences of the United States of America",
    year = "2019",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20190529-152829578",
    id = "record",
    issn = "0027-8424",
    doi = "10.1073/pnas.1904577116",
    volume = "116",
    pmcid = "PMC6576217"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20190520-085650396,
    title = "Figure 1 Theory Meets Figure 2 Experiments in the Study of Gene Expression",
    journal = "Annual Review of Biophysics",
    year = "2019",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20190520-085650396",
    id = "record",
    issn = "1936-122X",
    doi = "10.1146/annurev-biophys-052118-115525",
    volume = "48"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20190102-135256302,
    title = "Combinatorial Control through Allostery",
    journal = "Journal of Physical Chemistry B",
    year = "2019",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20190102-135256302",
    id = "record",
    issn = "1520-6106",
    doi = "10.1021/acs.jpcb.8b12517",
    volume = "123",
    pmcid = "PMC6467274"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20190311-132254175,
    title = "Measuring the Energetic Costs of Embryonic Development",
    journal = "Developmental Cell",
    year = "2019",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20190311-132254175",
    id = "record",
    issn = "1534-5807",
    doi = "10.1016/j.devcel.2019.02.016",
    volume = "48"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20190207-155651541,
    title = "Microtubule End-Clustering Maintains a Steady-State Spindle Shape",
    journal = "Current Biology",
    year = "2019",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20190207-155651541",
    id = "record",
    issn = "0960-9822",
    doi = "10.1016/j.cub.2019.01.016",
    volume = "29",
    pmcid = "PMC6383811"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20181030-132608570,
    title = "Mapping DNA sequence to transcription factor binding energy in vivo",
    journal = "PLoS Computational Biology",
    year = "2019",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20181030-132608570",
    id = "record",
    issn = "1553-734X",
    doi = "10.1371/journal.pcbi.1006226",
    volume = "15",
    pmcid = "PMC6375646"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20181128-093526476,
    title = "Measuring cis-regulatory energetics in living cells using allelic manifolds",
    journal = "eLife",
    year = "2018",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20181128-093526476",
    id = "record",
    issn = "2050-084X",
    doi = "10.7554/eLife.40618",
    volume = "7"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20180917-125104010,
    title = "Connecting the dots between mechanosensitive channel abundance, osmotic shock, and survival at single-cell resolution",
    journal = "Journal of Bacteriology",
    year = "2018",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20180917-125104010",
    id = "record",
    issn = "0021-9193",
    doi = "10.1128/jb.00460-18",
    volume = "200",
    pmcid = "PMC6222198"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20181009-105623284,
    title = "Theoretical analysis of inducer and operator binding for cyclic-AMP receptor protein mutants",
    journal = "PLoS ONE",
    year = "2018",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20181009-105623284",
    id = "record",
    issn = "1932-6203",
    doi = "10.1371/journal.pone.0204275",
    volume = "13",
    pmcid = "PMC6157895"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20180521-155526693,
    title = "The biomass distribution on Earth",
    journal = "Proceedings of the National Academy of Sciences of the United States of America",
    year = "2018",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20180521-155526693",
    id = "record",
    issn = "0027-8424",
    doi = "10.1073/pnas.1711842115",
    volume = "115",
    pmcid = "PMC6016768"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20180507-083945479,
    title = "Systematic approach for dissecting the molecular mechanisms of transcriptional regulation in bacteria",
    journal = "Proceedings of the National Academy of Sciences of the United States of America",
    year = "2018",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20180507-083945479",
    id = "record",
    issn = "0027-8424",
    doi = "10.1073/pnas.1722055115",
    volume = "115",
    pmcid = "PMC6003448"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20171204-090149985,
    title = "Tuning transcriptional regulation through signaling: A predictive theory of allosteric induction",
    journal = "Cell Systems",
    year = "2018",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20171204-090149985",
    id = "record",
    issn = "2405-4712",
    doi = "10.1016/j.cels.2018.02.004",
    volume = "6",
    pmcid = "PMC5991102"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20180409-140949316,
    title = "Research: A comprehensive and quantitative exploration of thousands of viral genomes",
    journal = "eLife",
    year = "2018",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20180409-140949316",
    id = "record",
    issn = "2050-084X",
    doi = "10.7554/eLife.31955",
    volume = "7",
    pmcid = "PMC5908442"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20180501-112937401,
    title = "Two-Stage Dynamics of In Vivo Bacteriophage Genome Ejection",
    journal = "Physical Review X",
    year = "2018",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20180501-112937401",
    id = "record",
    issn = "2160-3308",
    doi = "10.1103/PhysRevX.8.021029",
    volume = "8"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20180510-092357051,
    title = "Membrane Tension and the Charge State of Cells",
    journal = "Biophysical Journal",
    year = "2018",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20180510-092357051",
    id = "record",
    issn = "0006-3495",
    doi = "10.1016/j.bpj.2017.11.203",
    volume = "114"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20180523-152301882,
    title = "Theoretical Analysis of Allosteric and Operator Binding for Cyclic-AMP Receptor Protein Mutants",
    journal = "Biophysical Journal",
    year = "2018",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20180523-152301882",
    id = "record",
    issn = "0006-3495",
    doi = "10.1016/j.bpj.2017.11.2330",
    volume = "114"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20180523-143351877,
    title = "A Systematic and Scalable Approach for Dissecting the Molecular Mechanisms of Transcriptional Regulation in Bacteria",
    journal = "Biophysical Journal",
    year = "2018",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20180523-143351877",
    id = "record",
    issn = "0006-3495",
    doi = "10.1016/j.bpj.2017.11.849",
    volume = "114"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20180510-124207785,
    title = "Skewing the Playing Field: A Single-Molecule Study on how RSS Sequence Influences Gene Segment Selection",
    journal = "Biophysical Journal",
    year = "2018",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20180510-124207785",
    id = "record",
    issn = "0006-3495",
    doi = "10.1016/j.bpj.2017.11.511",
    volume = "114"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20171128-123653098,
    title = "The role of DNA sequence in nucleosome breathing",
    journal = "European Physical Journal E",
    year = "2017",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20171128-123653098",
    id = "record",
    issn = "1292-8941",
    doi = "10.1140/epje/i2017-11596-2",
    volume = "40",
    pmcid = "PMC7001874"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20171009-100434563,
    title = "Musings on mechanism: quest for a quark theory of proteins?",
    journal = "FASEB Journal",
    year = "2017",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20171009-100434563",
    id = "record",
    issn = "0892-6638",
    doi = "10.1096/fj.201700594",
    volume = "31"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20170717-090138223,
    title = "Self-consistent theory of transcriptional control in complex regulatory architectures",
    journal = "PLOS ONE",
    year = "2017",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20170717-090138223",
    id = "record",
    issn = "1932-6203",
    doi = "10.1371/journal.pone.0179235",
    volume = "12",
    pmcid = "PMC5501422"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20170516-095417507,
    title = "Energetic cost of building a virus",
    journal = "Proceedings of the National Academy of Sciences of the United States of America",
    year = "2017",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20170516-095417507",
    id = "record",
    issn = "0027-8424",
    doi = "10.1073/pnas.1701670114",
    volume = "114",
    pmcid = "PMC5465929"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20170131-092637914,
    title = "Monod-Wyman-Changeux Analysis of Ligand-Gated Ion Channel Mutants",
    journal = "Journal of Physical Chemistry B",
    year = "2017",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20170131-092637914",
    id = "record",
    issn = "1520-6106",
    doi = "10.1021/acs.jpcb.6b12672",
    volume = "121",
    pmcid = "PMC5551692"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20170331-134057165,
    title = "The great ideas of biology: Exploration through experimentation in an undergraduate lab course",
    journal = "Molecular Biology of the Cell",
    year = "2016",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20170331-134057165",
    id = "record",
    issn = "1059-1524",
    volume = "27"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20160502-112340784,
    title = "Statistical Mechanics of Allosteric Enzymes",
    journal = "Journal of Physical Chemistry B",
    year = "2016",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20160502-112340784",
    id = "record",
    issn = "1520-6106",
    doi = "10.1021/acs.jpcb.6b01911",
    volume = "120",
    pmcid = "PMC5452729"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20160509-153942313,
    title = "Design Principles of Length Control of Cytoskeletal Structures",
    journal = "Annual Review of Biophysics",
    year = "2016",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20160509-153942313",
    id = "record",
    issn = "1936-122X",
    doi = "10.1146/annurev-biophys-070915-094206",
    volume = "45",
    pmcid = "PMC5466818"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20160311-132630114,
    title = "Using synthetic biology to make cells tomorrow's test tubes",
    journal = "Integrative Biology",
    year = "2016",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20160311-132630114",
    id = "record",
    issn = "1757-9694",
    doi = "10.1039/C6IB00006A",
    volume = "8",
    pmcid = "PMC4837077"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20160321-083721510,
    title = "SnapShot: Timescales in Cell Biology",
    journal = "Cell",
    year = "2016",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20160321-083721510",
    id = "record",
    issn = "0092-8674",
    doi = "10.1016/j.cell.2016.02.058",
    volume = "164"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20160106-065143620,
    title = "Predicting the impact of promoter variability on regulatory outputs",
    journal = "Scientific Reports",
    year = "2015",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20160106-065143620",
    id = "record",
    issn = "2045-2322",
    doi = "10.1038/srep18238",
    volume = "5",
    pmcid = "PMC4682146"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20151130-110111581,
    title = "Theory in Biology: Figure 1 or Figure 7?",
    journal = "Trends in Cell Biology",
    year = "2015",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20151130-110111581",
    id = "record",
    issn = "0962-8924",
    doi = "10.1016/j.tcb.2015.10.007",
    volume = "25",
    pmcid = "PMC4666001"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20150810-075722055,
    title = "Interplay of Protein Binding Interactions, DNA Mechanics, and Entropy in DNA Looping Kinetics",
    journal = "Biophysical Journal",
    year = "2015",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20150810-075722055",
    id = "record",
    issn = "0006-3495",
    doi = "10.1016/j.bpj.2015.06.054",
    volume = "109"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20150324-125537305,
    title = "Single-molecule analysis of RAG-mediated V(D)J DNA cleavage",
    journal = "Proceedings of the National Academy of Sciences of the United States of America",
    year = "2015",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20150324-125537305",
    id = "record",
    issn = "0027-8424",
    doi = "10.1073/pnas.1503477112",
    volume = "112",
    pmcid = "PMC4394307"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20150409-132742605,
    title = "Napoleon Is in Equilibrium",
    journal = "Annual Review of Condensed Matter Physics",
    year = "2015",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20150409-132742605",
    id = "record",
    issn = "1947-5454",
    doi = "10.1146/annurev-conmatphys-031214-014558",
    volume = "6",
    pmcid = "PMC4946674"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20150108-145321538,
    title = "The Rate of Osmotic Downshock Determines the Survival Probability of Bacterial Mechanosensitive Channel Mutants",
    journal = "Journal of Bacteriology",
    year = "2015",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20150108-145321538",
    id = "record",
    issn = "0021-9193",
    doi = "10.1128/JB.02175-14",
    volume = "197",
    pmcid = "PMC4288683"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20150129-091025277,
    title = "The Influence of Promoter Architectures and Regulatory Motifs on Gene Expression in Escherichia coli",
    journal = "PLoS ONE",
    year = "2014",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20150129-091025277",
    id = "record",
    issn = "1932-6203",
    doi = "10.1371/journal.pone.0114347",
    volume = "9",
    pmcid = "PMC4280137"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20141223-110116617,
    title = "Promoter architecture dictates cell-to-cell variability in gene expression",
    journal = "Science",
    year = "2014",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20141223-110116617",
    id = "record",
    issn = "0036-8075",
    doi = "10.1126/science.1255301",
    volume = "346",
    pmcid = "PMC4388425"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20150219-110954794,
    title = "Scaling of Gene Expression with Transcription-Factor Fugacity",
    journal = "Physical Review Letters",
    year = "2014",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20150219-110954794",
    id = "record",
    issn = "0031-9007",
    doi = "10.1103/PhysRevLett.113.258101",
    volume = "113",
    pmcid = "PMC4386862"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20141209-161207781,
    title = "Modulation of DNA loop lifetimes by the free energy of loop formation",
    journal = "Proceedings of the National Academy of Sciences of the United States of America",
    year = "2014",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20141209-161207781",
    id = "record",
    issn = "0027-8424",
    doi = "10.1073/pnas.1415685111",
    volume = "111",
    pmcid = "PMC4267329"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20141204-100345751,
    title = "The quantified cell",
    journal = "Molecular Biology of the Cell",
    year = "2014",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20141204-100345751",
    id = "record",
    issn = "1059-1524",
    doi = "10.1091/mbc.E14-09-1347",
    volume = "25",
    pmcid = "PMC4230611"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20140224-115855856,
    title = "Multiple LacI-mediated loops revealed by Bayesian statistics and tethered particle motion",
    journal = "Nucleic Acids Research",
    year = "2014",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20140224-115855856",
    id = "record",
    issn = "0305-1048",
    doi = "10.1093/nar/gku563",
    volume = "42",
    pmcid = "PMC4176382"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20140509-111341446,
    title = "Comparison of the theoretical and real-world evolutionary potential of a genetic circuit",
    journal = "Physical Biology",
    year = "2014",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20140509-111341446",
    id = "record",
    issn = "1478-3967",
    doi = "10.1088/1478-3975/11/2/026005",
    volume = "11",
    pmcid = "PMC4051709"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20140320-130336013,
    title = "The Transcription Factor Titration Effect Dictates Level of Gene Expression",
    journal = "Cell",
    year = "2014",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20140320-130336013",
    id = "record",
    issn = "0092-8674",
    doi = "10.1016/j.cell.2014.02.022",
    volume = "156",
    pmcid = "PMC4080642"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20140710-091408000,
    title = "Time-Resolved Plasmid Counting by Way of Transcription Factor Sequestration",
    journal = "Biophysical Journal",
    year = "2014",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20140710-091408000",
    id = "record",
    issn = "0006-3495",
    doi = "10.1016/j.bpj.2013.11.1606",
    volume = "106"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20140710-102048609,
    title = "Single Molecule Dynamics Governing the Initiation of V(D)J Recombination",
    journal = "Biophysical Journal",
    year = "2014",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20140710-102048609",
    id = "record",
    issn = "0006-3495",
    doi = "10.1016/j.bpj.2013.11.3826",
    volume = "106"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20140710-094648257,
    title = "The Transcription Factor Titration Effect Dictates Level of Gene Expression",
    journal = "Biophysical Journal",
    year = "2014",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20140710-094648257",
    id = "record",
    issn = "0006-3495",
    doi = "10.1016/j.bpj.2013.11.4483",
    volume = "106"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20140710-081414989,
    title = "Dissecting the Role of Ferrous Iron in Pseudomonas Aeruginosa Gene Regulation",
    journal = "Biophysical Journal",
    year = "2014",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20140710-081414989",
    id = "record",
    issn = "0006-3495",
    doi = "10.1016/j.bpj.2013.11.2115",
    volume = "106"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20140710-104425641,
    title = "Identification and Analysis of the Transcriptional Regulatory Networks Governing Mechanosensitive Channels in E. coli",
    journal = "Biophysical Journal",
    year = "2014",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20140710-104425641",
    id = "record",
    issn = "0006-3495",
    doi = "10.1016/j.bpj.2013.11.4472",
    volume = "106"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20140710-100757843,
    title = "Multiple Lac-Mediated Loops Revealed by Bayesian Statistics and Tethered Particle Motion",
    journal = "Biophysical Journal",
    year = "2014",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20140710-100757843",
    id = "record",
    issn = "0006-3495",
    doi = "10.1016/j.bpj.2013.11.174",
    volume = "106"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20140710-080835668,
    title = "Promoter Architecture Dictates Variability in Gene Expression",
    journal = "Biophysical Journal",
    year = "2014",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20140710-080835668",
    id = "record",
    issn = "0006-3495",
    doi = "10.1016/j.bpj.2013.11.4481",
    volume = "106"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20140710-084044769,
    title = "Dynamic Gene Expression and Design Principles of Viral Infection Pathway",
    journal = "Biophysical Journal",
    year = "2014",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20140710-084044769",
    id = "record",
    issn = "0006-3495",
    doi = "10.1016/j.bpj.2013.11.2111",
    volume = "106"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20140710-094352199,
    title = "The Rate of Osmotic Shock Determines Bacterial Survival",
    journal = "Biophysical Journal",
    year = "2014",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20140710-094352199",
    id = "record",
    issn = "0006-3495",
    doi = "10.1016/j.bpj.2013.11.3084",
    volume = "106"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20140404-102949606,
    title = "Statistical mechanical model of coupled transcription from multiple promoters due to transcription factor titration",
    journal = "Physical Review E",
    year = "2014",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20140404-102949606",
    id = "record",
    issn = "1539-3755",
    doi = "10.1103/PhysRevE.89.012702",
    volume = "89",
    pmcid = "PMC4043999"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20140326-113402727,
    title = "Distinct structural features of TFAM drive mitochondrial DNA packaging versus transcriptional activation",
    journal = "Nature Communications",
    year = "2014",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20140326-113402727",
    id = "record",
    issn = "2041-1723",
    doi = "10.1038/ncomms4077",
    volume = "5",
    pmcid = "PMC3936014"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20140103-091544508,
    title = "The Feynman Lectures on Physics",
    journal = "Nature",
    year = "2013",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20140103-091544508",
    id = "record",
    issn = "0028-0836",
    doi = "10.1038/504030a",
    volume = "504"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20131204-074505690,
    title = "DNA sequence-dependent mechanics and protein-assisted bending in repressor-mediated loop formation",
    journal = "Physical Biology",
    year = "2013",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20131204-074505690",
    id = "record",
    issn = "1478-3967",
    doi = "10.1088/1478-3975/10/6/066005",
    volume = "10",
    pmcid = "PMC3915735"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20131205-092633341,
    title = "Poly(dA:dT)-Rich DNAs Are Highly Flexible in the Context
 of DNA Looping",
    journal = "PLOS ONE",
    year = "2013",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20131205-092633341",
    id = "record",
    issn = "1932-6203",
    doi = "10.1371/journal.pone.0075799",
    volume = "8",
    pmcid = "PMC3795714"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20130614-144031370,
    title = "Statistical Mechanics of Monod–Wyman–Changeux (MWC) Models",
    journal = "Journal of Molecular Biology",
    year = "2013",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20130614-144031370",
    id = "record",
    issn = "0022-2836",
    doi = "10.1016/j.jmb.2013.03.013",
    volume = "425",
    pmcid = "PMC3786005"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20130718-104555723,
    title = "Connection between Oligomeric State and Gating Characteristics of Mechanosensitive Ion Channels",
    journal = "PLoS Computational Biology",
    year = "2013",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20130718-104555723",
    id = "record",
    issn = "1553-734X",
    doi = "10.1371/journal.pcbi.1003055",
    volume = "9",
    pmcid = "PMC3656111"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20130523-084817493,
    title = "Directional interactions and cooperativity between mechanosensitive membrane proteins",
    journal = "Europhysics Letters",
    year = "2013",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20130523-084817493",
    id = "record",
    issn = "0295-5075",
    doi = "10.1209/0295-5075/101/68002",
    volume = "101",
    pmcid = "PMC4193682"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20130429-081637377,
    title = "Analysis of DNA Looping Kinetics in Tethered Particle Motion Experiments using Hidden Markov Models",
    journal = "Biophysical Journal",
    year = "2013",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20130429-081637377",
    id = "record",
    issn = "0006-3495",
    doi = "10.1016/j.bpj.2012.11.2329",
    volume = "104"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20130425-140427051,
    title = "Bacteria are Stressed Out Too: The Physics of Mechanosensation",
    journal = "Biophysical Journal",
    year = "2013",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20130425-140427051",
    id = "record",
    issn = "0006-3495",
    doi = "10.1016/j.bpj.2012.11.072",
    volume = "104"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20130205-103824324,
    title = "Theoretical and Experimental Dissection of DNA Loop-Mediated Repression",
    journal = "Physical Review Letters",
    year = "2013",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20130205-103824324",
    id = "record",
    issn = "0031-9007",
    doi = "10.1103/PhysRevLett.110.018101",
    volume = "110",
    pmcid = "PMC3716456"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20130118-102317460,
    title = "Interdisciplinary Graduate Training in Teaching Labs",
    journal = "Science",
    year = "2012",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20130118-102317460",
    id = "record",
    issn = "0036-8075",
    doi = "10.1126/science.1216570",
    volume = "338",
    pmcid = "PMC3810400"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20130211-115816554,
    title = "Tuning Promoter Strength through RNA Polymerase Binding Site Design in Escherichia coli",
    journal = "PLoS Computational Biology",
    year = "2012",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20130211-115816554",
    id = "record",
    issn = "1553-734X",
    doi = "10.1371/journal.pcbi.1002811",
    volume = "8",
    pmcid = "PMC3521663"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20120709-133545138,
    title = "Sequence Dependence of Transcription Factor-Mediated DNA Looping",
    journal = "Nucleic Acids Research",
    year = "2012",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20120709-133545138",
    id = "record",
    issn = "0305-1048",
    doi = "10.1093/nar/gks473",
    volume = "40",
    pmcid = "PMC3439888"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20120827-142257698,
    title = "A single-molecule view of protein action at a distance",
    journal = "Protein Science",
    year = "2012",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20120827-142257698",
    id = "record",
    issn = "0961-8368",
    volume = "21"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20120814-102205172,
    title = "Operator Sequence Alters Gene Expression Independently of Transcription Factor Occupancy in Bacteria",
    journal = "Cell Reports",
    year = "2012",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20120814-102205172",
    id = "record",
    issn = "2211-1247",
    doi = "10.1016/j.celrep.2012.06.004",
    volume = "2",
    pmcid = "PMC3616187"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20120716-083157294,
    title = "A Single-Molecule Hershey-Chase Experiment",
    journal = "Current Biology",
    year = "2012",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20120716-083157294",
    id = "record",
    issn = "0960-9822",
    doi = "10.1016/j.cub.2012.05.023",
    volume = "22",
    pmcid = "PMC3462812"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20120706-080343895,
    title = "Focus on the physics of the cell membrane",
    journal = "New Journal of Physics",
    year = "2012",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20120706-080343895",
    id = "record",
    issn = "1367-2630",
    doi = "10.1088/1367-2630/14/5/055021",
    volume = "14"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20120523-100035590,
    title = "Single-Cell Census of Mechanosensitive Channels in Living Bacteria",
    journal = "PLoS ONE",
    year = "2012",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20120523-100035590",
    id = "record",
    issn = "1932-6203",
    doi = "10.1371/journal.pone.0033077",
    volume = "7",
    pmcid = "PMC3302805"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20120501-131827231,
    title = "Entropic Tension in Crowded Membranes",
    journal = "PLoS Computational Biology",
    year = "2012",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20120501-131827231",
    id = "record",
    issn = "1553-734X",
    doi = "10.1371/journal.pcbi.1002431",
    volume = "8",
    pmcid = "PMC3305330"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20111111-151109702,
    title = "Lipid Bilayer Mechanics in a Pipette with Glass-Bilayer Adhesion",
    journal = "Biophysical Journal",
    year = "2011",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20111111-151109702",
    id = "record",
    issn = "0006-3495",
    doi = "10.1016/j.bpj.2011.08.057",
    volume = "101"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20111114-111309696,
    title = "Mechanosensitive Channels: What Can They Do and How Do They Do It?",
    journal = "Structure",
    year = "2011",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20111114-111309696",
    id = "record",
    issn = "0969-2126",
    doi = "10.1016/j.str.2011.09.005",
    volume = "19",
    pmcid = "PMC3203646"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20110909-100811989,
    title = "Jonathan Widom (1955–2011)",
    journal = "Nature",
    year = "2011",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20110909-100811989",
    id = "record",
    issn = "0028-0836",
    doi = "10.1038/476400a",
    volume = "476"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20110929-140259410,
    title = "Comparison and Calibration of Different Reporters for Quantitative Analysis of Gene Expression",
    journal = "Biophysical Journal",
    year = "2011",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20110929-140259410",
    id = "record",
    issn = "0006-3495",
    doi = "10.1016/j.bpj.2011.06.026",
    volume = "101"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20110801-102535300,
    title = "Quantitative dissection of the simple repression input–output function",
    journal = "Proceedings of the National Academy of Sciences of the United States of America",
    year = "2011",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20110801-102535300",
    id = "record",
    issn = "0027-8424",
    doi = "10.1073/pnas.1015616108",
    volume = "108",
    pmcid = "PMC3141941"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20110725-075342594,
    title = "Building Enhancers from the Ground Up: A Synthetic Biology Approach",
    journal = "Cell",
    year = "2011",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20110725-075342594",
    id = "record",
    issn = "0092-8674",
    doi = "10.1016/j.cell.2011.06.024",
    volume = "146",
    pmcid = "PMC3155781"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20110706-095349883,
    title = "Probing Individual Environmental Bacteria for Viruses by Using Microfluidic Digital PCR",
    journal = "Science",
    year = "2011",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20110706-095349883",
    id = "record",
    issn = "0036-8075",
    doi = "10.1126/science.1200758",
    volume = "333",
    pmcid = "PMC3261838"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20110621-092111171,
    title = "Elastic energy of polyhedral bilayer vesicles",
    journal = "Physical Review E",
    year = "2011",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20110621-092111171",
    id = "record",
    issn = "1539-3755",
    doi = "10.1103/PhysRevE.83.061901",
    volume = "83",
    pmcid = "PMC3236088"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20110422-111812818,
    title = "Effect of Promoter Architecture on the Cell-to-Cell Variability in Gene Expression",
    journal = "PLoS Computational Biology",
    year = "2011",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20110422-111812818",
    id = "record",
    issn = "1553-734X",
    doi = "10.1371/journal.pcbi.1001100",
    volume = "7",
    pmcid = "PMC3048382"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20110324-162735185,
    title = "Morphological Phase Diagram for Lipid Membrane Domains with Entropic Tension",
    journal = "Physical Review Letters",
    year = "2011",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20110324-162735185",
    id = "record",
    issn = "0031-9007",
    doi = "10.1103/PhysRevLett.106.057801",
    volume = "106"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20110207-083519894,
    title = "Transcription by the numbers redux: experiments and calculations that surprise",
    journal = "Trends in Cell Biology",
    year = "2010",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20110207-083519894",
    id = "record",
    issn = "0962-8924",
    doi = "10.1016/j.tcb.2010.07.002",
    volume = "20",
    pmcid = "PMC3174145"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20110302-102608259,
    title = "Minimal Bending Energies of Bilayer Polyhedra",
    journal = "Physical Review Letters",
    year = "2010",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20110302-102608259",
    id = "record",
    issn = "0031-9007",
    doi = "10.1103/PhysRevLett.105.228101",
    volume = "105",
    pmcid = "PMC3169433"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20101004-094321543,
    title = "Dynamical fluctuations in biochemical reactions and cycles",
    journal = "Physical Review E",
    year = "2010",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20101004-094321543",
    id = "record",
    issn = "1539-3755",
    doi = "10.1103/PhysRevE.82.031905",
    volume = "82"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20100907-101147251,
    title = "Ion-Dependent Dynamics of DNA Ejections for Bacteriophage λ",
    journal = "Biophysical Journal",
    year = "2010",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20100907-101147251",
    id = "record",
    issn = "0006-3495",
    doi = "10.1016/j.bpj.2010.06.024",
    volume = "99",
    pmcid = "PMC2920739"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20100119-145049392,
    title = "A feeling for the numbers in biology",
    journal = "Proceedings of the National Academy of Sciences of the United States of America",
    year = "2009",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20100119-145049392",
    id = "record",
    issn = "0027-8424",
    doi = "10.1073/pnas.0907732106",
    volume = "106",
    pmcid = "PMC2799844"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20170409-072401658,
    title = "RNA-protein binding kinetics in an automated microfluidic reactor",
    journal = "Nucleic Acids Research",
    year = "2009",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20170409-072401658",
    id = "record",
    issn = "0305-1048",
    doi = "10.1093/nar/gkp733",
    volume = "37",
    pmcid = "PMC2790880"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20100114-101620211,
    title = "RNA–protein binding kinetics in an automated microfluidic reactor",
    journal = "Nucleic Acids Research",
    year = "2009",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20100114-101620211",
    id = "record",
    issn = "0305-1048",
    doi = "10.1093/nar/gkp733",
    volume = "37"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20090828-231031757,
    title = "Morphology and interaction between lipid domains",
    journal = "Proceedings of the National Academy of Sciences of the United States of America",
    year = "2009",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20090828-231031757",
    id = "record",
    issn = "0027-8424",
    doi = "10.1073/pnas.0903825106",
    volume = "106",
    pmcid = "PMC2726347"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20090817-144809908,
    title = "Trajectory Approach to Two-State Kinetics of Single Particles on Sculpted Energy Landscapes",
    journal = "Physical Review Letters",
    year = "2009",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20090817-144809908",
    id = "record",
    issn = "0031-9007",
    doi = "10.1103/PhysRevLett.103.050603",
    volume = "103",
    pmcid = "PMC3273425"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20090727-143233526,
    title = "Reduced amino acid alphabets exhibit an improved sensitivity and selectivity in fold assignment",
    journal = "Bioinformatics",
    year = "2009",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20090727-143233526",
    id = "record",
    issn = "1367-4803",
    doi = "10.1093/bioinformatics/btp164",
    volume = "25",
    pmcid = "PMC2732308"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20090914-090009819,
    title = "First-principles calculation of DNA looping in tethered particle experiments",
    journal = "Physical Biology",
    year = "2009",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20090914-090009819",
    id = "record",
    issn = "1478-3967",
    doi = "10.1088/1478-3975/6/2/025001",
    volume = "6"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20100120-154513518,
    title = "Concentration and Length Dependence of DNA Looping in Transcriptional Regulation",
    journal = "PLoS ONE",
    year = "2009",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20100120-154513518",
    id = "record",
    issn = "1932-6203",
    doi = "10.1371/journal.pone.0005621",
    volume = "4",
    pmcid = "PMC2682762"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20090814-082130740,
    title = "Emerging roles for lipids in shaping membrane-protein function",
    journal = "Nature",
    year = "2009",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20090814-082130740",
    id = "record",
    issn = "0028-0836",
    doi = "10.1038/nature08147",
    volume = "459",
    pmcid = "PMC3169427"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20090825-145726010,
    title = "Biochemistry on a Leash: The Roles of Tether Length and Geometry in Signal Integration Proteins",
    journal = "Biophysical Journal",
    year = "2009",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20090825-145726010",
    id = "record",
    issn = "0006-3495",
    doi = "10.1016/j.bpj.2008.10.052",
    volume = "96",
    pmcid = "PMC2717227"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:LEEpnas08,
    title = "Membrane shape as a reporter for applied forces",
    journal = "Proceedings of the National Academy of Sciences of the United States of America",
    year = "2008",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:LEEpnas08",
    id = "record",
    issn = "0027-8424",
    doi = "10.1073/pnas.0806814105",
    volume = "105",
    pmcid = "PMC2614748"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:REEpre08,
    title = "Membrane mechanics as a probe of ion-channel gating mechanisms",
    journal = "Physical Review E",
    year = "2008",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:REEpre08",
    id = "record",
    issn = "1539-3755",
    doi = "10.1103/PhysRevE.78.041901",
    volume = "78"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:GRApnas07,
    title = "Real-time observations of single bacteriophage λ DNA ejections in vitro",
    journal = "Proceedings of the National Academy of Sciences of the United States of America",
    year = "2007",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:GRApnas07",
    id = "record",
    issn = "0027-8424",
    doi = "10.1073/pnas.0703274104",
    volume = "104",
    pmcid = "PMC1976217"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:URSploscb07,
    title = "Cooperative Gating and Spatial Organization of Membrane Proteins through Elastic Interactions",
    journal = "PLOS Computational Biology",
    year = "2007",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:URSploscb07",
    id = "record",
    issn = "1553-7358",
    doi = "10.1371/journal.pcbi.0030081",
    volume = "3",
    pmcid = "PMC1864995"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20170526-112238161,
    title = "Measuring Flux Distributions for Diffusion in the Small-Numbers Limit",
    journal = "Journal of Physical Chemistry B",
    year = "2007",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20170526-112238161",
    id = "record",
    issn = "1520-6106",
    doi = "10.1021/jp067036j",
    volume = "111",
    pmcid = "PMC3261839"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20180619-104551728,
    title = "Biological consequences of tightly bent DNA: The other life of a macromolecular celebrity",
    journal = "Biopolymers",
    year = "2007",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20180619-104551728",
    id = "record",
    issn = "0006-3525",
    doi = "10.1002/bip.20627",
    volume = "85",
    pmcid = "PMC3496788"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20150409-090719819,
    title = "High flexibility of DNA on short length scales probed by atomic force microscopy",
    journal = "Nature Nanotechnology",
    year = "2006",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20150409-090719819",
    id = "record",
    issn = "1748-3387",
    doi = "10.1038/nnano.2006.63",
    volume = "1"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20180619-083759884,
    title = "The effect of genome length on ejection forces in bacteriophage lambda",
    journal = "Virology",
    year = "2006",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20180619-083759884",
    id = "record",
    issn = "0042-6822",
    doi = "10.1016/j.virol.2006.01.003",
    volume = "348",
    pmcid = "PMC3178461"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:PHIpt06,
    title = "The Biological Frontier of Physics",
    journal = "Physics Today",
    year = "2006",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:PHIpt06",
    id = "record",
    issn = "0031-9228",
    volume = "59"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:SEGprl06,
    title = "Volume-exclusion effects in tethered-particle experiments: bead size matters",
    journal = "Physical Review Letters",
    year = "2006",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:SEGprl06",
    id = "record",
    issn = "0031-9007",
    doi = "10.1103/PhysRevLett.96.088306",
    volume = "96",
    pmcid = "PMC3261840"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:DUPprl05,
    title = "Finite-Temperature Quasicontinuum: Molecular Dynamics without All the Atoms",
    journal = "Physical Review Letters",
    year = "2005",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:DUPprl05",
    id = "record",
    issn = "0031-9007",
    doi = "10.1103/PhysRevLett.95.060202",
    volume = "95"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:WIGpre05,
    title = "Exact theory of kinkable elastic polymers",
    journal = "Physical Review E",
    year = "2005",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:WIGpre05",
    id = "record",
    issn = "1063-651X",
    doi = "10.1103/PhysRevE.71.021909",
    volume = "71",
    pmcid = "PMC3496790"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:OLMmsmse04,
    title = "Modelling diffusion in crystals under high internal stress gradients",
    journal = "Modelling and Simulation in Materials Science and Engineering",
    year = "2004",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:OLMmsmse04",
    id = "record",
    issn = "0965-0393",
    doi = "10.1088/0965-0393/12/5/003",
    volume = "12"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:WIGpnas04,
    title = "Analytic models for mechanotransduction: gating a mechanosensitive channel",
    journal = "Proceedings of the National Academy of Sciences of the United States of America",
    year = "2004",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:WIGpnas04",
    id = "record",
    issn = "0027-8424",
    doi = "10.1073/pnas.0307804101",
    volume = "101",
    pmcid = "PMC384697"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20170408-162850097,
    title = "Force steps during viral DNA packaging?",
    journal = "Journal of the Mechanics and Physics of Solids",
    year = "2003",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20170408-162850097",
    id = "record",
    issn = "0022-5096",
    doi = "10.1016/j.jmps.2003.09.016",
    volume = "51"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:PURpnas03,
    title = "Mechanics of DNA packaging in viruses",
    journal = "Proceedings of the National Academy of Sciences of the United States of America",
    year = "2003",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:PURpnas03",
    id = "record",
    issn = "0027-8424",
    doi = "10.1073/pnas.0737893100",
    volume = "100",
    pmcid = "PMC404299"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:PHIarmr02,
    title = "Quasicontinuum representations of atomic-scale mechanics: From proteins to dislocations",
    journal = "Annual Review of Materials Research",
    year = "2002",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:PHIarmr02",
    id = "record",
    issn = "1531-7331",
    doi = "10.1146/annurev.matsci.32.122001.102202",
    volume = "32"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20111101-090938695,
    title = "Dislocation plasticity in thin metal films",
    journal = "MRS Bulletin",
    year = "2002",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20111101-090938695",
    id = "record",
    issn = "0883-7694",
    doi = "10.1557/mrs2002.17",
    volume = "27"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:OLMmsmse01,
    title = "Lattice resistance and Peierls stress in finite size atomistic dislocation simulations",
    journal = "Modelling and Simulation in Materials Science and Engineering",
    year = "2001",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:OLMmsmse01",
    id = "record",
    issn = "0965-0393",
    doi = "10.1088/0965-0393/9/3/308",
    volume = "9"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20171212-153930662,
    title = "Hierarchical modeling in the mechanics of materials",
    journal = "International Journal of Solids and Structures",
    year = "2000",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20171212-153930662",
    id = "record",
    issn = "0020-7683",
    doi = "10.1016/S0020-7683(99)00095-5",
    volume = "37"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:PHImsmse99,
    title = "Hierarchical models of plasticity: dislocation nucleation and interaction",
    journal = "Modelling and Simulation in Materials Science and Engineering",
    year = "1999",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:PHImsmse99",
    id = "record",
    issn = "0965-0393",
    doi = "10.1088/0965-0393/7/5/309",
    volume = "7"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:SHEmsmse99,
    title = "The atomistic structure and energy of nascent dislocation loops",
    journal = "Modelling and Simulation in Materials Science and Engineering",
    year = "1999",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:SHEmsmse99",
    id = "record",
    issn = "0965-0393",
    doi = "10.1088/0965-0393/7/4/309",
    volume = "7"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:TADjmr99,
    title = "Nanoindentation and incipient plasticity",
    journal = "Journal of Materials Research",
    year = "1999",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:TADjmr99",
    id = "record",
    issn = "0884-2914",
    volume = "14"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20171213-100338338,
    title = "A non-local formulation of the Peierls dislocation model",
    journal = "Journal of the Mechanics and Physics of Solids",
    year = "1998",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20171213-100338338",
    id = "record",
    issn = "0022-5096",
    doi = "10.1016/S0022-5096(98)00057-X",
    volume = "46"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:MILmsmse98,
    title = "Quasicontinuum simulation of fracture at the atomic scale",
    journal = "Modelling and Simulation in Materials Science and Engineering",
    year = "1998",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:MILmsmse98",
    id = "record",
    issn = "0965-0393",
    doi = "10.1088/0965-0393/6/5/008",
    volume = "6"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20171213-100643529,
    title = "Quasicontinuum models of fracture and plasticity",
    journal = "Engineering Fracture Mechanics",
    year = "1998",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20171213-100643529",
    id = "record",
    issn = "0013-7944",
    doi = "10.1016/S0013-7944(98)00047-2",
    volume = "61"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:SHEprl98,
    title = "Quasicontinuum Models of Interfacial Structure and Deformation",
    journal = "Physical Review Letters",
    year = "1998",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:SHEprl98",
    id = "record",
    issn = "0031-9007",
    doi = "10.1103/PhysRevLett.80.742",
    volume = "08"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20160607-114810939,
    title = "Mixed Atomistic and Continuum Models of Deformation in Solids",
    journal = "Langmuir",
    year = "1996",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20160607-114810939",
    id = "record",
    issn = "0743-7463",
    doi = "10.1021/la9508912",
    volume = "12"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20171213-150724557,
    title = "Quasicontinuum analysis of defects in solids",
    journal = "Philosophical Magazine A",
    year = "1996",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20171213-150724557",
    id = "record",
    issn = "0141-8610",
    doi = "10.1080/01418619608243000",
    volume = "73"
}