@article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/118062, title ="Modeling and mechanical perturbations reveal how spatially regulated anchorage gives rise to spatially distinct mechanics across the mammalian spindle", author = "Suresh, Pooja and Galstyan, Vahe and Phillips, Rob and Dumont, Sophie", journal = "eLife", volume = "11", pages = "Art. No. e79558", month = "November", year = "2022", doi = "https://doi.org/10.7554/eLife.79558", url = "https://resolver.caltech.edu/CaltechAUTHORS:20221128-494241100.20", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/117649, title ="Anthroponumbers.org: A quantitative database of human impacts on Planet Earth", author = "Chure, Griffin and Banks, Rachel A. and Flamholz, Avi I. and Sarai, Nicholas S. and Kamb, Mason and Lopez-Gomez, Ignacio and Bar-On, Yinon and Milo, Ron and Phillips, Rob", journal = "Patterns", volume = "3", number = "9", pages = "Art. No. 100552", month = "September", year = "2022", doi = "https://doi.org/10.1016/j.patter.2022.100552", url = "https://resolver.caltech.edu/CaltechAUTHORS:20221031-575177800.5", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/114442, title ="Connections distributed within 3 μm of chromosomes are necessary and sufficient for the kinetochore-fiber’s robust anchorage in the mammalian spindle", author = "Suresh, Pooja and Galstyan, Vahe and Phillips, Rob and Dumont, Sophie", journal = "Biophysical Journal", volume = "121", number = "3", pages = "448a-449a", month = "February", year = "2022", doi = "https://doi.org/10.1016/j.bpj.2021.11.536", url = "https://resolver.caltech.edu/CaltechAUTHORS:20220422-231443172", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/114445, title ="Distinct self-organized actin patterns explain diverse parasite gliding modes", author = "Hueschen, Christina and Segev Zarko, Li-av and Chen, Jian-Hua and LeGros, Mark and Larabell, Carolyn A. and Boothroyd, John C. and Phillips, Rob and Dunn, Alexander R.", journal = "Biophysical Journal", volume = "121", number = "3", pages = "314a", month = "February", year = "2022", doi = "https://doi.org/10.1016/j.bpj.2021.11.1183", url = "https://resolver.caltech.edu/CaltechAUTHORS:20220425-141009622", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/114432, title ="Measuring energy consumption through space and time in an active matter system of cytoskeletal motors and filaments", author = "Duarte, Ana I. and Jin Lee, Heun and Banks, Rachel A. and Hirokawa, Soichi and Galstyan, Vahe and Thomson, Matt and Phillips, Rob", journal = "Biophysical Journal", volume = "121", number = "3", pages = "521a-522a", month = "February", year = "2022", doi = "https://doi.org/10.1016/j.bpj.2021.11.2745", url = "https://resolver.caltech.edu/CaltechAUTHORS:20220422-296339700", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/114436, title ="Reconstituting the nonequilibrium biophysics of the LECA cytoskeleton in active matter", author = "Larios, David A. and Phillips, Rob and Thomson, Matt", journal = "Biophysical Journal", volume = "121", number = "3", pages = "521a", month = "February", year = "2022", doi = "https://doi.org/10.1016/j.bpj.2021.11.2744", url = "https://resolver.caltech.edu/CaltechAUTHORS:20220422-225704323", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/114435, title ="Reproducibility, stochasticity, and geometry in a lattice of cross-feeding microbial cells", author = "Salmon, Gabe and Phillips, Rob", journal = "Biophysical Journal", volume = "121", number = "3", pages = "120a", month = "February", year = "2022", doi = "https://doi.org/10.1016/j.bpj.2021.11.2086", url = "https://resolver.caltech.edu/CaltechAUTHORS:20220422-225130615", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/113194, title ="MCRL: using a reference library to compress a metagenome into a non-redundant list of sequences, considering viruses as a case study", author = "Tadmor, Arbel D. and Phillips, Rob", journal = "Bioinformatics", volume = "38", number = "3", pages = "631-647", month = "February", year = "2022", doi = "https://doi.org/10.1093/bioinformatics/btab703", url = "https://resolver.caltech.edu/CaltechAUTHORS:20220201-508256000", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/114694, title ="Actin Organization and Dynamics in Motile Toxoplasma Gondii Parasites", author = "Hueschen, Christina and Segev Zarko, Li-Av and Chen, Jian-Hua and LeGros, Mark and Larabell, Carolyn and Boothroyd, John and Phillips, Rob and Dunn, Alexander R.", journal = "American Journal of Tropical Medicine and Hygiene", volume = "105", number = "5", pages = "448-449", month = "November", year = "2021", url = "https://resolver.caltech.edu/CaltechAUTHORS:20220512-144706094", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/106178, title ="Fundamental limits on the rate of bacterial growth and their influence on proteomic composition", author = "Belliveau, Nathan M. and Chure, Griffin and Hueschen, Christina L. and Garcia, Hernan G. and Kondev, Jane and Fisher, Daniel S. and Theriot, Julie A. and Phillips, Rob", journal = "Cell Systems", volume = "12", number = "9", pages = "924-944", month = "September", year = "2021", doi = "https://doi.org/10.1016/j.cels.2021.06.002", url = "https://resolver.caltech.edu/CaltechAUTHORS:20201021-080615473", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/106594, title ="Persistent fluid flows defined by active matter boundaries", author = "Qu, Zijie and Schildknecht, Dominik and Shadkhoo, Shahriar and Amaya, Enrique and Jiang, Jialong and Lee, Heun Jin and Larios, David and Yang, Fan and Phillips, Rob and Thomson, Matt", journal = "Communications Physics", volume = "4", pages = "Art. No. 198", month = "August", year = "2021", doi = "https://doi.org/10.1038/s42005-021-00703-3", url = "https://resolver.caltech.edu/CaltechAUTHORS:20201110-143708446", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/106731, title ="The total number and mass of SARS-CoV-2 virions", author = "Sender, Ron and Bar-On, Yinon M. and Gleizer, Shmuel and Bernsthein, Biana and Flamholz, Avi and Phillips, Rob and Milo, Ron", journal = "Proceedings of the National Academy of Sciences of the United States of America", volume = "118", number = "25", pages = "Art. No. e2024815118", month = "June", year = "2021", doi = "https://doi.org/10.1073/pnas.2024815118", url = "https://resolver.caltech.edu/CaltechAUTHORS:20201118-151353187", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/109651, title ="Schrödinger’s What Is Life? at 75", author = "Phillips, Rob", journal = "Cell Systems", volume = "12", number = "6", pages = "465-476", month = "June", year = "2021", doi = "https://doi.org/10.1016/j.cels.2021.05.013", url = "https://resolver.caltech.edu/CaltechAUTHORS:20210629-200149422", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/108920, title ="Understanding the Mechanisms that Give Rise to the Mammalian Spindle's Response to Force using Theory and Microneedle Manipulation", author = "Galstyan, Vahe and Suresh, Pooja and Dumont, Sophie and Phillips, Rob", journal = "Biophysical Journal", volume = "120", number = "3", pages = "347A", month = "February", year = "2021", doi = "https://doi.org/10.1016/j.bpj.2020.11.2158", url = "https://resolver.caltech.edu/CaltechAUTHORS:20210503-101747249", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/103922, title ="Reconciling kinetic and thermodynamic models of bacterial transcription", author = "Morrison, Muir and Razo-Mejia, Manuel and Phillips, Rob", journal = "PLOS Computational Biology", volume = "17", number = "1", pages = "Art. No. e1008572", month = "January", year = "2021", doi = "https://doi.org/10.1371/journal.pcbi.1008572", url = "https://resolver.caltech.edu/CaltechAUTHORS:20200615-130249775", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/101053, title ="Multiplexed characterization of rationally designed promoter architectures deconstructs combinatorial logic for IPTG-inducible systems", author = "Yu, Timothy C. and Liu, Winnie L. and Brinck, Marcia S. and Davis, Jessica E. and Shek, Jeremy and Bower, Grace and Einav, Tal and Insigne, Kimberly D. and Phillips, Rob and Kosuri, Sriram and Urtecho, Guillaume", journal = "Nature Communications", volume = "12", pages = "Art. No. 325", month = "January", year = "2021", doi = "https://doi.org/10.1038/s41467-020-20094-3", url = "https://resolver.caltech.edu/CaltechAUTHORS:20200203-092359628", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/103451, title ="Proofreading through spatial gradients", author = "Galstyan, Vahe and Husain, Kabir and Xiao, Fangzhou and Murugan, Arvind and Phillips, Rob", journal = "eLife", volume = "9", pages = "Art. No. e60415", month = "December", year = "2020", doi = "https://doi.org/10.7554/eLife.60415", url = "https://resolver.caltech.edu/CaltechAUTHORS:20200526-121021095", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/100811, title ="Deciphering the regulatory genome of Escherichia coli, one hundred promoters at a time", author = "Ireland, William T. and Beeler, Suzannah M. and Flores-Bautista, Emanuel and McCarty, Nicholas S. and Röschinger, Tom and Belliveau, Nathan M. and Sweredoski, Michael J. and Moradian, Annie and Kinney, Justin B. and Phillips, Rob", journal = "eLife", volume = "2020", number = "9", pages = "Art. No. e55308", month = "September", year = "2020", doi = "https://doi.org/10.7554/eLife.55308", url = "https://resolver.caltech.edu/CaltechAUTHORS:20200121-102719123", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/94350, title ="First-principles prediction of the information processing capacity of a simple genetic circuit", author = "Razo-Mejia, Manuel and Marzen, Sarah and Chure, Griffin and Taubman, Rachel and Morrison, Muir and Phillips, Rob", journal = "Physical Review E", volume = "102", number = "2", pages = "Art. No. 022404", month = "August", year = "2020", doi = "https://doi.org/10.1103/PhysRevE.102.022404", url = "https://resolver.caltech.edu/CaltechAUTHORS:20190402-080512452", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/99107, title ="Sequence-Dependent Dynamics of Synthetic and Endogenous RSSs in V(D)J Recombination", author = "Hirokawa, Soichi and Chure, Griffin and Belliveau, Nathan M. and Lovely, Geoffrey A. and Anaya, Michael and Schatz, David G. and Baltimore, David and Phillips, Rob", journal = "Nucleic Acids Research", volume = "48", number = "12", pages = "6726-6739", month = "July", year = "2020", doi = "https://doi.org/10.1093/nar/gkaa418", url = "https://resolver.caltech.edu/CaltechAUTHORS:20191007-074542895", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/100147, title ="Theoretical investigation of a genetic switch for metabolic adaptation", author = "Laxhuber, Kathrin S. and Morrison, Muir J. and Chure, Griffin and Belliveau, Nathan M. and Strandkvist, Charlotte and Naughton, Kyle L. and Phillips, Rob", journal = "PLoS ONE", volume = "15", number = "5", pages = "Art. No. e0226453", month = "May", year = "2020", doi = "https://doi.org/10.1371/journal.pone.0226453", url = "https://resolver.caltech.edu/CaltechAUTHORS:20191202-142214486", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/102210, title ="SARS-CoV-2 (COVID-19) by the numbers", author = "Bar-On, Yinon M. and Flamholz, Avi and Phillips, Rob and Milo, Ron", journal = "eLife", volume = "9", pages = "Art. No. e57309", month = "March", year = "2020", doi = "https://doi.org/10.7554/elife.57309", url = "https://resolver.caltech.edu/CaltechAUTHORS:20200331-215659202", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/101201, title ="Bridging Kinesin Properties with System-scale Characteristics of Microtubule-Motor Assemblies", author = "Banks, Rachel and Lee, Heun Jin and Ross, Tyler and Thomson, Matt and Phillips, Rob", journal = "Biophysical Journal", volume = "118", number = "3", pages = "176a-177a", month = "February", year = "2020", doi = "https://doi.org/10.1016/j.bpj.2019.11.1081", url = "https://resolver.caltech.edu/CaltechAUTHORS:20200210-111806006", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/101196, title ="Genetic Barcodes Enable Quantitative Mapping of Operator Mutants to Gene Expression", author = "McCarty, Nicholas S. and Razo-Mejia, Manuel and Phillips, Rob", journal = "Biophysical Journal", volume = "118", number = "3", pages = "611a", month = "February", year = "2020", doi = "https://doi.org/10.1016/j.bpj.2019.11.3298", url = "https://resolver.caltech.edu/CaltechAUTHORS:20200210-095852686", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/101190, title ="Kinetic Proofreading using Substrate Gradients and Enzyme Diffusion", author = "Galstyan, Vahe and Husain, Kabir and Xiao, Fangzhou and Murugan, Arvind and Phillips, Rob", journal = "Biophysical Journal", volume = "118", number = "3", pages = "573a-574a", month = "February", year = "2020", doi = "https://doi.org/10.1016/j.bpj.2019.11.3118", url = "https://resolver.caltech.edu/CaltechAUTHORS:20200210-085326975", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/101200, title ="Modeling Microbial Interactions across Nutritional Environments using Maximum Entropy", author = "Salmon, Gabe and Phillips, Rob", journal = "Biophysical Journal", volume = "118", number = "3", pages = "347a", month = "February", year = "2020", doi = "https://doi.org/10.1016/j.bpj.2019.11.2004", url = "https://resolver.caltech.edu/CaltechAUTHORS:20200210-111428049", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/101194, title ="Schrodinger's “What is Life” At 75: The Physical Aspects of the Living Cell Revisited", author = "Phillips, Rob", journal = "Biophysical Journal", volume = "118", number = "3", pages = "2a", month = "February", year = "2020", doi = "https://doi.org/10.1016/j.bpj.2019.11.204", url = "https://resolver.caltech.edu/CaltechAUTHORS:20200210-092745829", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/101195, title ="The Molecular Biophysics of Adaptation", author = "Chure, Griffin and Phillips, Rob", journal = "Biophysical Journal", volume = "118", number = "3", pages = "545a", month = "February", year = "2020", doi = "https://doi.org/10.1016/j.bpj.2019.11.2983", url = "https://resolver.caltech.edu/CaltechAUTHORS:20200210-093408528", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/100149, title ="Allostery and Kinetic Proofreading", author = "Galstyan, Vahe and Phillips, Rob", journal = "Journal of Physical Chemistry B", volume = "123", number = "51", pages = "10990-11002", month = "December", year = "2019", doi = "https://doi.org/10.1021/acs.jpcb.9b08380", url = "https://resolver.caltech.edu/CaltechAUTHORS:20191202-151154014", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/99410, title ="Harnessing Avidity: Quantifying the Entropic and Energetic Effects of Linker Length and Rigidity for Multivalent Binding of Antibodies to HIV-1", author = "Einav, Tal and Yazdi, Shahrzad and Coey, Aaron and Bjorkman, Pamela J. and Phillips, Rob", journal = "Cell Systems", volume = "9", number = "5", pages = "466-474", month = "November", year = "2019", doi = "https://doi.org/10.1016/j.cels.2019.09.007", url = "https://resolver.caltech.edu/CaltechAUTHORS:20191023-142258650", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/98252, title ="Predictive shifts in free energy couple mutations to their phenotypic consequences", author = "Chure, Griffin and Razo-Mejia, Manuel and Belliveau, Nathan M. and Einav, Tal and Kaczmarek, Zofii A. and Barnes, Stephanie L. and Lewis, Mitchell and Phillips, Rob", journal = "Proceedings of the National Academy of Sciences of the United States of America", volume = "116", number = "37", pages = "18275-18284", month = "September", year = "2019", doi = "https://doi.org/10.1073/pnas.1907869116", url = "https://resolver.caltech.edu/CaltechAUTHORS:20190826-153157241", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/91968, title ="Controlling Organization and Forces in Active Matter Through Optically-Defined Boundaries", author = "Ross, Tyler D. and Lee, Heun Jin and Qu, Zijie and Banks, Rachel A. and Phillips, Rob and Thomson, Matt", journal = "Nature", volume = "572", number = "7768", pages = "224-229", month = "August", year = "2019", doi = "https://doi.org/10.1038/s41586-019-1447-1", url = "https://resolver.caltech.edu/CaltechAUTHORS:20190102-092232993", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/94497, title ="How the avidity of polymerase binding to the –35/–10 promoter sites affects gene expression", author = "Einav, Tal and Phillips, Rob", journal = "Proceedings of the National Academy of Sciences of the United States of America", volume = "116", number = "27", pages = "13340-13345", month = "July", year = "2019", doi = "https://doi.org/10.1073/pnas.1905615116", url = "https://resolver.caltech.edu/CaltechAUTHORS:20190405-094702005", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/95889, title ="Torque-dependent remodeling of the bacterial flagellar motor", author = "Wadhwa, Navish and Phillips, Rob and Berg, Howard C.", journal = "Proceedings of the National Academy of Sciences of the United States of America", volume = "116", number = "24", pages = "11764-11769", month = "June", year = "2019", doi = "https://doi.org/10.1073/pnas.1904577116", url = "https://resolver.caltech.edu/CaltechAUTHORS:20190529-152829578", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/95587, title ="Figure 1 Theory Meets Figure 2 Experiments in the Study of Gene Expression", author = "Phillips, Rob and Belliveau, Nathan M. and Chure, Griffin and Garcia, Hernan G. and Razo-Mejia, Manuel and Scholes, Clarissa", journal = "Annual Review of Biophysics", volume = "48", pages = "121-163", month = "May", year = "2019", doi = "https://doi.org/10.1146/annurev-biophys-052118-115525", url = "https://resolver.caltech.edu/CaltechAUTHORS:20190520-085650396", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/91986, title ="Combinatorial Control through Allostery", author = "Galstyan, Vahe and Funk, Luke and Einav, Tal and Phillips, Rob", journal = "Journal of Physical Chemistry B", volume = "123", number = "13", pages = "2792-2800", month = "April", year = "2019", doi = "https://doi.org/10.1021/acs.jpcb.8b12517", url = "https://resolver.caltech.edu/CaltechAUTHORS:20190102-135256302", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/93688, title ="Measuring the Energetic Costs of Embryonic Development", author = "Foster, Peter J. and Razo-Mejia, Manuel and Phillips, Rob", journal = "Developmental Cell", volume = "48", number = "5", pages = "591-592", month = "March", year = "2019", doi = "https://doi.org/10.1016/j.devcel.2019.02.016", url = "https://resolver.caltech.edu/CaltechAUTHORS:20190311-132254175", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/92773, title ="Microtubule End-Clustering Maintains a Steady-State Spindle Shape", author = "Hueschen, Christina L. and Galstyan, Vahe and Amouzgar, Meelad and Phillips, Rob and Dumont, Sophie", journal = "Current Biology", volume = "29", number = "4", pages = "700-708", month = "February", year = "2019", doi = "https://doi.org/10.1016/j.cub.2019.01.016", url = "https://resolver.caltech.edu/CaltechAUTHORS:20190207-155651541", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/90506, title ="Mapping DNA sequence to transcription factor binding energy in vivo", author = "Barnes, Stephanie L. and Belliveau, Nathan M. and Ireland, William T. and Kinney, Justin B. and Phillips, Rob", journal = "PLoS Computational Biology", volume = "15", number = "2", pages = "Art. No. e1006226", month = "February", year = "2019", doi = "https://doi.org/10.1371/journal.pcbi.1006226", url = "https://resolver.caltech.edu/CaltechAUTHORS:20181030-132608570", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/91275, title ="Measuring cis-regulatory energetics in living cells using allelic manifolds", author = "Forcier, Talitha L. and Ayaz, Andalus and Gill, Manraj S. and Jones, Daniel and Phillips, Rob and Kinney, Justin B.", journal = "eLife", volume = "7", pages = "Art. No. e40618", month = "December", year = "2018", doi = "https://doi.org/10.7554/eLife.40618", url = "https://resolver.caltech.edu/CaltechAUTHORS:20181128-093526476", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/89679, title ="Connecting the dots between mechanosensitive channel abundance, osmotic shock, and survival at single-cell resolution", author = "Chure, Griffin and Lee, Heun Jin and Rasmussen, Akiko and Phillips, Rob", journal = "Journal of Bacteriology", volume = "200", number = "23", pages = "Art. No. e00460-18", month = "November", year = "2018", doi = "https://doi.org/10.1128/jb.00460-18", url = "https://resolver.caltech.edu/CaltechAUTHORS:20180917-125104010", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/90190, title ="Theoretical analysis of inducer and operator binding for cyclic-AMP receptor protein mutants", author = "Einav, Tal and Duque, Julia and Phillips, Rob", journal = "PLoS ONE", volume = "13", number = "9", pages = "Art. No. e0204275", month = "September", year = "2018", doi = "https://doi.org/10.1371/journal.pone.0204275", url = "https://resolver.caltech.edu/CaltechAUTHORS:20181009-105623284", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/86531, title ="The biomass distribution on Earth", author = "Bar-On, Yinon M. and Phillips, Rob and Milo, Ron", journal = "Proceedings of the National Academy of Sciences of the United States of America", volume = "115", number = "25", pages = "6506-6511", month = "June", year = "2018", doi = "https://doi.org/10.1073/pnas.1711842115", url = "https://resolver.caltech.edu/CaltechAUTHORS:20180521-155526693", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/86235, title ="Systematic approach for dissecting the molecular mechanisms of transcriptional regulation in bacteria", author = "Belliveau, Nathan M. and Barnes, Stephanie L. and Ireland, William T. and Jones, Daniel L. and Sweredoski, Michael J. and Moradian, Annie and Hess, Sonja and Kinney, Justin B. and Phillips, Rob", journal = "Proceedings of the National Academy of Sciences of the United States of America", volume = "115", number = "21", pages = "E4796-E4805", month = "May", year = "2018", doi = "https://doi.org/10.1073/pnas.1722055115", url = "https://resolver.caltech.edu/CaltechAUTHORS:20180507-083945479", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/83656, title ="Tuning transcriptional regulation through signaling: A predictive theory of allosteric induction", author = "Razo-Mejia, Manuel and Barnes, Stephanie L. and Belliveau, Nathan M. and Chure, Griffin and Einav, Tal and Lewis, Mitchell and Phillips, Rob", journal = "Cell Systems", volume = "6", number = "4", pages = "456-469", month = "April", year = "2018", doi = "https://doi.org/10.1016/j.cels.2018.02.004", url = "https://resolver.caltech.edu/CaltechAUTHORS:20171204-090149985", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/85694, title ="Research: A comprehensive and quantitative exploration of thousands of viral genomes", author = "Mahmoudabadi, Gita and Phillips, Rob", journal = "eLife", volume = "7", pages = "Art. No. e31955", month = "April", year = "2018", doi = "https://doi.org/10.7554/eLife.31955", url = "https://resolver.caltech.edu/CaltechAUTHORS:20180409-140949316", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/86155, title ="Two-Stage Dynamics of In Vivo Bacteriophage Genome Ejection", author = "Chen, Yi-Ju and Wu, David and Gelbart, William and Knobler, Charles M. and Phillips, Rob and Kegel, Willem K.", journal = "Physical Review X", volume = "8", number = "2", pages = "Art. No. 021029", month = "April", year = "2018", doi = "https://doi.org/10.1103/PhysRevX.8.021029", url = "https://resolver.caltech.edu/CaltechAUTHORS:20180501-112937401", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/86572, title ="A Systematic and Scalable Approach for Dissecting the Molecular Mechanisms of Transcriptional Regulation in Bacteria", author = "Belliveau, Nathan M. and Barnes, Stephanie L. and Ireland, William T. and Beeler, Suzannah M. and Kinney, Justin B. and Phillips, Rob", journal = "Biophysical Journal", volume = "114", number = "3", pages = "151A", month = "February", year = "2018", doi = "https://doi.org/10.1016/j.bpj.2017.11.849", url = "https://resolver.caltech.edu/CaltechAUTHORS:20180523-143351877", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/86331, title ="Membrane Tension and the Charge State of Cells", author = "Phillips, Rob", journal = "Biophysical Journal", volume = "114", number = "3", pages = "29a", month = "February", year = "2018", doi = "https://doi.org/10.1016/j.bpj.2017.11.203", url = "https://resolver.caltech.edu/CaltechAUTHORS:20180510-092357051", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/86337, title ="Skewing the Playing Field: A Single-Molecule Study on how RSS Sequence Influences Gene Segment Selection", author = "Hirokawa, Soichi and Belliveau, Nathan M. and Lovely, Geoffrey A. and Anaya, Michael and Schatz, David G. and Baltimore, David and Phillips, Rob", journal = "Biophysical Journal", volume = "114", number = "3", pages = "86a", month = "February", year = "2018", doi = "https://doi.org/10.1016/j.bpj.2017.11.511", url = "https://resolver.caltech.edu/CaltechAUTHORS:20180510-124207785", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/86579, title ="Theoretical Analysis of Allosteric and Operator Binding for Cyclic-AMP Receptor Protein Mutants", author = "Einav, Tal and Duque, Julia and Phillips, Rob", journal = "Biophysical Journal", volume = "114", number = "3", pages = "420A-421A", month = "February", year = "2018", doi = "https://doi.org/10.1016/j.bpj.2017.11.2330", url = "https://resolver.caltech.edu/CaltechAUTHORS:20180523-152301882", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/83533, title ="The role of DNA sequence in nucleosome breathing", author = "Culkin, Jamie and de Bruin, Lennart and Tompitak, Marco and Phillips, Rob and Schiessel, Helmut", journal = "European Physical Journal E", volume = "40", number = "11", pages = "Art. No. 106", month = "November", year = "2017", doi = "https://doi.org/10.1140/epje/i2017-11596-2", url = "https://resolver.caltech.edu/CaltechAUTHORS:20171128-123653098", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/82204, title ="Musings on mechanism: quest for a quark theory of proteins?", author = "Phillips, Rob", journal = "FASEB Journal", volume = "31", number = "10", pages = "4207-4215", month = "October", year = "2017", doi = "https://doi.org/10.1096/fj.201700594", url = "https://resolver.caltech.edu/CaltechAUTHORS:20171009-100434563", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/79121, title ="Self-consistent theory of transcriptional control in complex regulatory architectures", author = "Landman, Jasper and Brewster, Robert C. and Weinert, Franz M. and Phillips, Rob and Kegel, Willem K.", journal = "PLOS ONE", volume = "12", number = "7", pages = "Art. No. e0179235", month = "July", year = "2017", doi = "https://doi.org/10.1371/journal.pone.0179235", url = "https://resolver.caltech.edu/CaltechAUTHORS:20170717-090138223", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/77488, title ="Energetic cost of building a virus", author = "Mahmoudabadi, Gita and Milo, Ron and Phillips, Rob", journal = "Proceedings of the National Academy of Sciences of the United States of America", volume = "114", number = "22", pages = "E4324-E4333", month = "May", year = "2017", doi = "https://doi.org/10.1073/pnas.1701670114", url = "https://resolver.caltech.edu/CaltechAUTHORS:20170516-095417507", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/73863, title ="Monod-Wyman-Changeux Analysis of Ligand-Gated Ion Channel Mutants", author = "Einav, Tal and Phillips, Rob", journal = "Journal of Physical Chemistry B", volume = "121", number = "15", pages = "3813-3824", month = "April", year = "2017", doi = "https://doi.org/10.1021/acs.jpcb.6b12672", url = "https://resolver.caltech.edu/CaltechAUTHORS:20170131-092637914", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/75597, title ="The great ideas of biology: Exploration through experimentation in an undergraduate lab course", author = "Finch, L. and Horii, C. V. and Phillips, R. and Bois, J. S.", journal = "Molecular Biology of the Cell", volume = "27", pages = "Art. No. P830", month = "December", year = "2016", url = "https://resolver.caltech.edu/CaltechAUTHORS:20170331-134057165", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/66585, title ="Statistical Mechanics of Allosteric Enzymes", author = "Einav, Tal and Mazutis, Linas and Phillips, Rob", journal = "Journal of Physical Chemistry B", volume = "120", number = "26", pages = "6021-6037", month = "July", year = "2016", doi = "https://doi.org/10.1021/acs.jpcb.6b01911", url = "https://resolver.caltech.edu/CaltechAUTHORS:20160502-112340784", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/66789, title ="Design Principles of Length Control of Cytoskeletal Structures", author = "Mohapatra, Lishibanya and Goode, Bruce L. and Jelenkovic, Predrag and Phillips, Rob and Kondev, Jane", journal = "Annual Review of Biophysics", volume = "45", pages = "85-116", month = "July", year = "2016", doi = "https://doi.org/10.1146/annurev-biophys-070915-094206", url = "https://resolver.caltech.edu/CaltechAUTHORS:20160509-153942313", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/65305, title ="Using synthetic biology to make cells tomorrow's test tubes", author = "Garcia, Hernan G. and Brewster, Robert C. and Phillips, Rob", journal = "Integrative Biology", volume = "8", number = "4", pages = "431-450", month = "April", year = "2016", doi = "https://doi.org/10.1039/C6IB00006A", url = "https://resolver.caltech.edu/CaltechAUTHORS:20160311-132630114", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/65507, title ="SnapShot: Timescales in Cell Biology", author = "Shamir, Maya and Bar-On, Yinon and Phillips, Rob and Milo, Ron", journal = "Cell", volume = "164", number = "6", pages = "1302-1302.e1", month = "March", year = "2016", doi = "https://doi.org/10.1016/j.cell.2016.02.058", url = "https://resolver.caltech.edu/CaltechAUTHORS:20160321-083721510", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/63401, title ="Predicting the impact of promoter variability on regulatory outputs", author = "Kreamer, Naomi N. and Phillips, Rob and Newman, Dianne K. and Boedicker, James Q.", journal = "Scientific Reports", volume = "5", pages = "Art. No. 18238", month = "December", year = "2015", doi = "https://doi.org/10.1038/srep18238", url = "https://resolver.caltech.edu/CaltechAUTHORS:20160106-065143620", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/62445, title ="Theory in Biology: Figure 1 or Figure 7?", author = "Phillips, Rob", journal = "Trends in Cell Biology", volume = "25", number = "12", pages = "723-729", month = "December", year = "2015", doi = "https://doi.org/10.1016/j.tcb.2015.10.007", url = "https://resolver.caltech.edu/CaltechAUTHORS:20151130-110111581", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/59326, title ="Interplay of Protein Binding Interactions, DNA Mechanics, and Entropy in DNA Looping Kinetics", author = "Mulligan, Peter J. and Chen, Yi-Ju and Phillips, Rob and Spakowitz, Andrew J.", journal = "Biophysical Journal", volume = "109", number = "3", pages = "618-629", month = "August", year = "2015", doi = "https://doi.org/10.1016/j.bpj.2015.06.054", url = "https://resolver.caltech.edu/CaltechAUTHORS:20150810-075722055", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/56031, title ="Single-molecule analysis of RAG-mediated V(D)J DNA cleavage", author = "Lovely, Geoffrey A. and Brewster, Robert C. and Schatz, David G. and Baltimore, David and Phillips, Rob", journal = "Proceedings of the National Academy of Sciences of the United States of America", volume = "112", number = "14", pages = "E1715-E1723", month = "April", year = "2015", doi = "https://doi.org/10.1073/pnas.1503477112 ", url = "https://resolver.caltech.edu/CaltechAUTHORS:20150324-125537305", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/56540, title ="Napoleon Is in Equilibrium", author = "Phillips, Rob", journal = "Annual Review of Condensed Matter Physics", volume = "6", pages = "85-111", month = "March", year = "2015", doi = "https://doi.org/10.1146/annurev-conmatphys-031214-014558 ", url = "https://resolver.caltech.edu/CaltechAUTHORS:20150409-132742605", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/53398, title ="The Rate of Osmotic Downshock Determines the Survival Probability of Bacterial Mechanosensitive Channel Mutants", author = "Bialecka-Fornal, Maja and Lee, Heun Jin and Phillips, Rob", journal = "Journal of Bacteriology", volume = "197", number = "1", pages = "231-237", month = "January", year = "2015", doi = "https://doi.org/10.1128/JB.02175-14", url = "https://resolver.caltech.edu/CaltechAUTHORS:20150108-145321538", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/54224, title ="The Influence of Promoter Architectures and Regulatory Motifs on Gene Expression in Escherichia coli", author = "Rydenfelt, Mattias and Garcia, Hernan G. and Cox, Robert Sidney, III and Phillips, Rob", journal = "PLoS ONE", volume = "9", number = "12", pages = "Art. No. e114347", month = "December", year = "2014", doi = "https://doi.org/10.1371/journal.pone.0114347", url = "https://resolver.caltech.edu/CaltechAUTHORS:20150129-091025277", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/53149, title ="Promoter architecture dictates cell-to-cell variability in gene expression", author = "Jones, Daniel L. and Brewster, Robert C. and Phillips, Rob", journal = "Science", volume = "346", number = "6216", pages = "1533-1536", month = "December", year = "2014", doi = "https://doi.org/10.1126/science.1255301", url = "https://resolver.caltech.edu/CaltechAUTHORS:20141223-110116617", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/55008, title ="Scaling of Gene Expression with Transcription-Factor Fugacity", author = "Weinert, Franz M. and Brewster, Robert C. and Rydenfelt, Mattias and Phillips, Rob and Kegel, Willem K.", journal = "Physical Review Letters", volume = "113", number = "25", pages = "Art. No. 258101", month = "December", year = "2014", doi = "https://doi.org/10.1103/PhysRevLett.113.258101 ", url = "https://resolver.caltech.edu/CaltechAUTHORS:20150219-110954794", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/52518, title ="Modulation of DNA loop lifetimes by the free energy of loop formation", author = "Chen, Yi-Ju and Johnson, Stephanie and Mulligan, Peter and Spakowitz, Andrew J. and Phillips, Rob", journal = "Proceedings of the National Academy of Sciences of the United States of America", volume = "111", number = "49", pages = "17396-17401", month = "December", year = "2014", doi = "https://doi.org/10.1073/pnas.1415685111", url = "https://resolver.caltech.edu/CaltechAUTHORS:20141209-161207781", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/52378, title ="The quantified cell", author = "Flamholz, Avi and Phillips, Rob and Milo, Ron", journal = "Molecular Biology of the Cell", volume = "25", number = "22", pages = "3497-3500", month = "November", year = "2014", doi = "https://doi.org/10.1091/mbc.E14-09-1347", url = "https://resolver.caltech.edu/CaltechAUTHORS:20141204-100345751", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/43946, title ="Multiple LacI-mediated loops revealed by Bayesian statistics and tethered particle motion", author = "Johnson, Stephanie and van de Meent, Jan-Willem and Phillips, Rob and Wiggins, Chris H. and Lindén, Martin", journal = "Nucleic Acids Research", volume = "42", number = "16", pages = "10265-10277", month = "September", year = "2014", doi = "https://doi.org/10.1093/nar/gku563", url = "https://resolver.caltech.edu/CaltechAUTHORS:20140224-115855856", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/45641, title ="Comparison of the theoretical and real-world evolutionary potential of a genetic circuit", author = "Razo-Mejia, M. and Boedicker, J. Q. and Jones, D. and DeLuna, A. and Kinney, J. B. and Phillips, R.", journal = "Physical Biology", volume = "11", number = "2", pages = "Art. No. 026005", month = "April", year = "2014", doi = "https://doi.org/10.1088/1478-3975/11/2/026005 ", url = "https://resolver.caltech.edu/CaltechAUTHORS:20140509-111341446", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/44412, title ="The Transcription Factor Titration Effect Dictates Level of Gene Expression", author = "Brewster, Robert C. and Weinert, Franz M. and Garcia, Hernan G. and Song, Dan and Rydenfelt, Mattias and Phillips, Rob", journal = "Cell", volume = "156", number = "6", pages = "1312-1323", month = "March", year = "2014", doi = "https://doi.org/10.1016/j.cell.2014.02.022", url = "https://resolver.caltech.edu/CaltechAUTHORS:20140320-130336013", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/47116, title ="Dissecting the Role of Ferrous Iron in Pseudomonas Aeruginosa Gene Regulation", author = "Boedicker, James and Phillips, Rob", journal = "Biophysical Journal", volume = "106", number = "2", pages = "374A", month = "January", year = "2014", doi = "https://doi.org/10.1016/j.bpj.2013.11.2115", url = "https://resolver.caltech.edu/CaltechAUTHORS:20140710-081414989", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/47120, title ="Dynamic Gene Expression and Design Principles of Viral Infection Pathway", author = "Chen, Yi-Ju and Zhiyentayev, Timur and Wu, David and Cai, Long and Phillips, Rob", journal = "Biophysical Journal", volume = "106", number = "2", pages = "373A", month = "January", year = "2014", doi = "https://doi.org/10.1016/j.bpj.2013.11.2111", url = "https://resolver.caltech.edu/CaltechAUTHORS:20140710-084044769", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/47139, title ="Identification and Analysis of the Transcriptional Regulatory Networks Governing Mechanosensitive Channels in E. coli", author = "Barnes, Stephanie and Jones, Daniel and Belliveau, Nathan and Sundaresh, Sushant and Kinney, Justin and Phillips, Rob", journal = "Biophysical Journal", volume = "106", number = "2", pages = "487A", month = "January", year = "2014", doi = "https://doi.org/10.1016/j.bpj.2013.11.4472", url = "https://resolver.caltech.edu/CaltechAUTHORS:20140710-104425641", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/47136, title ="Multiple Lac-Mediated Loops Revealed by Bayesian Statistics and Tethered Particle Motion", author = "Lindén, Martin and Johnson, Stephanie and van de Meent, Jan-Willem and Phillips, Rob and Wiggins, Chris", journal = "Biophysical Journal", volume = "106", number = "2", pages = "22A", month = "January", year = "2014", doi = "https://doi.org/10.1016/j.bpj.2013.11.174", url = "https://resolver.caltech.edu/CaltechAUTHORS:20140710-100757843", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/47115, title ="Promoter Architecture Dictates Variability in Gene Expression", author = "Jones, Daniel L. and Brewster, Robert and Phillips, Rob", journal = "Biophysical Journal", volume = "106", number = "2", pages = "489A", month = "January", year = "2014", doi = "https://doi.org/10.1016/j.bpj.2013.11.4481", url = "https://resolver.caltech.edu/CaltechAUTHORS:20140710-080835668", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/47137, title ="Single Molecule Dynamics Governing the Initiation of V(D)J Recombination", author = "Lovely, Geoffrey and Lindén, Martin and Ramesh, Pradeep and Schatz, David and Baltimore, David and Phillips, Rob", journal = "Biophysical Journal", volume = "106", number = "2", pages = "692A", month = "January", year = "2014", doi = "https://doi.org/10.1016/j.bpj.2013.11.3826", url = "https://resolver.caltech.edu/CaltechAUTHORS:20140710-102048609", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/47131, title ="The Rate of Osmotic Shock Determines Bacterial Survival", author = "Lee, Heun Jin and Bialecka-Fornal, Maja and Phillips, Rob", journal = "Biophysical Journal", volume = "106", number = "2", pages = "554A", month = "January", year = "2014", doi = "https://doi.org/10.1016/j.bpj.2013.11.3084", url = "https://resolver.caltech.edu/CaltechAUTHORS:20140710-094352199", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/47132, title ="The Transcription Factor Titration Effect Dictates Level of Gene Expression", author = "Weinert, Franz M. and Brewster, Robert C. and Garcia, Hernan G. and Song, Linda and Rydenfelt, Mattias and Phillips, Rob", journal = "Biophysical Journal", volume = "106", number = "2", pages = "489A", month = "January", year = "2014", doi = "https://doi.org/10.1016/j.bpj.2013.11.4483", url = "https://resolver.caltech.edu/CaltechAUTHORS:20140710-094648257", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/47126, title ="Time-Resolved Plasmid Counting by Way of Transcription Factor Sequestration", author = "Brewster, Robert and Weinert, Franz and Phillips, Rob", journal = "Biophysical Journal", volume = "106", number = "2", pages = "274A", month = "January", year = "2014", doi = "https://doi.org/10.1016/j.bpj.2013.11.1606", url = "https://resolver.caltech.edu/CaltechAUTHORS:20140710-091408000", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/44660, title ="Statistical mechanical model of coupled transcription from multiple promoters due to transcription factor titration", author = "Rydenfelt, Mattias and Cox, Robert Sidney, III and Garcia, Hernan and Phillips, Rob", journal = "Physical Review E", volume = "89", number = "1", pages = "Art. No. 012702", month = "January", year = "2014", doi = "https://doi.org/10.1103/PhysRevE.89.012702", url = "https://resolver.caltech.edu/CaltechAUTHORS:20140404-102949606", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/44529, title ="Distinct structural features of TFAM drive mitochondrial DNA packaging versus transcriptional activation", author = "Ngo, Huu B. and Lovely, Geoffrey A. and Phillips, Rob and Chan, David C.", journal = "Nature Communications", volume = "5", number = "1", pages = "Art. No. 3077", month = "January", year = "2014", doi = "https://doi.org/10.1038/ncomms4077", url = "https://resolver.caltech.edu/CaltechAUTHORS:20140326-113402727", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/43197, title ="The Feynman Lectures on Physics", author = "Phillips, Rob", journal = "Nature", volume = "504", number = "7478", pages = "30-31", month = "December", year = "2013", doi = "https://doi.org/10.1038/504030a ", url = "https://resolver.caltech.edu/CaltechAUTHORS:20140103-091544508", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/42814, title ="DNA sequence-dependent mechanics and protein-assisted bending in repressor-mediated loop formation", author = "Boedicker, James Q. and Garcia, Hernan G. and Johnson, Stephanie and Phillips, Rob", journal = "Physical Biology", volume = "10", number = "6", pages = "Art. No. 066005", month = "December", year = "2013", doi = "https://doi.org/10.1088/1478-3975/10/6/066005", url = "https://resolver.caltech.edu/CaltechAUTHORS:20131204-074505690", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/42851, title ="Poly(dA:dT)-Rich DNAs Are Highly Flexible in the Context\r\nof DNA Looping", author = "Johnson, Stephanie and Chen, Yi-Ju and Phillips, Rob", journal = "PLOS ONE", volume = "8", number = "10", pages = "Art. No. e75799", month = "October", year = "2013", doi = "https://doi.org/10.1371/journal.pone.0075799", url = "https://resolver.caltech.edu/CaltechAUTHORS:20131205-092633341", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/38948, title ="Statistical Mechanics of Monod–Wyman–Changeux (MWC) Models", author = "Marzen, Sarah and Garcia, Hernan G. and Phillips, Rob", journal = "Journal of Molecular Biology", volume = "425", number = "9", pages = "1433-1460", month = "May", year = "2013", doi = "https://doi.org/10.1016/j.jmb.2013.03.013", url = "https://resolver.caltech.edu/CaltechAUTHORS:20130614-144031370", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/39443, title ="Connection between Oligomeric State and Gating Characteristics of Mechanosensitive Ion Channels", author = "Haselwandter, Christoph A. and Phillips, Rob", journal = "PLoS Computational Biology", volume = "9", number = "5", pages = "Art. No. e1003055", month = "May", year = "2013", doi = "https://doi.org/10.1371/journal.pcbi.1003055 ", url = "https://resolver.caltech.edu/CaltechAUTHORS:20130718-104555723", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/38651, title ="Directional interactions and cooperativity between mechanosensitive membrane proteins", author = "Haselwandter, Christoph A. and Phillips, Rob", journal = "Europhysics Letters", volume = "101", number = "6", pages = "Art. No. 68002 ", month = "March", year = "2013", doi = "https://doi.org/10.1209/0295-5075/101/68002", url = "https://resolver.caltech.edu/CaltechAUTHORS:20130523-084817493", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/38144, title ="Analysis of DNA Looping Kinetics in Tethered Particle Motion Experiments using Hidden Markov Models", author = "Lindén, Martin and Johnson, Stephanie and van de Meent, Jan-Willem and Phillips, Rob and Wiggins, Chris H.", journal = "Biophysical Journal", volume = "104", number = "2", pages = "418A-418A", month = "January", year = "2013", url = "https://resolver.caltech.edu/CaltechAUTHORS:20130429-081637377", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/38122, title ="Bacteria are Stressed Out Too: The Physics of Mechanosensation", author = "Phillips, Rob", journal = "Biophysical Journal", volume = "104", number = "2", pages = "8A-8A", month = "January", year = "2013", url = "https://resolver.caltech.edu/CaltechAUTHORS:20130425-140427051", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/36775, title ="Theoretical and Experimental Dissection of DNA Loop-Mediated Repression", author = "Boedicker, James Q. and Garcia, Hernan G. and Phillips, Rob", journal = "Physical Review Letters", volume = "110", number = "1", pages = "Art. No. 018101", month = "January", year = "2013", doi = "https://doi.org/10.1103/PhysRevLett.110.018101", url = "https://resolver.caltech.edu/CaltechAUTHORS:20130205-103824324", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/36473, title ="Interdisciplinary Graduate Training in Teaching Labs", author = "Vale, Ronald D. and DeRisi, Joseph and Phillips, Rob and Mullins, R. Dyche and Waterman, Clare and Mitchison, Timothy J.", journal = "Science", volume = "338", number = "6114", pages = "1542-1543", month = "December", year = "2012", doi = "https://doi.org/10.1126/science.1216570 ", url = "https://resolver.caltech.edu/CaltechAUTHORS:20130118-102317460", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/36848, title ="Tuning Promoter Strength through RNA Polymerase Binding Site Design in Escherichia coli", author = "Brewster, Robert C. and Jones, Daniel L. and Phillips, Rob", journal = "PLoS Computational Biology", volume = "8", number = "12", pages = "Art. No. e1002811", month = "December", year = "2012", doi = "https://doi.org/10.1371/journal.pcbi.1002811", url = "https://resolver.caltech.edu/CaltechAUTHORS:20130211-115816554", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/32311, title ="Sequence Dependence of Transcription Factor-Mediated DNA Looping", author = "Johnson, Stephanie and Lindén, Martin and Phillips, Rob", journal = "Nucleic Acids Research", volume = "40", number = "16", pages = "7728-7738", month = "September", year = "2012", doi = "https://doi.org/10.1093/nar/gks473", url = "https://resolver.caltech.edu/CaltechAUTHORS:20120709-133545138", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/33572, title ="A single-molecule view of protein action at a distance", author = "Phillips, Rob", journal = "Protein Science", volume = "21", number = "S1", pages = "65", month = "August", year = "2012", url = "https://resolver.caltech.edu/CaltechAUTHORS:20120827-142257698", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/33163, title ="Operator Sequence Alters Gene Expression Independently of Transcription Factor Occupancy in Bacteria", author = "Garcia, Hernan G. and Sanchez, Alvaro and Boedicker, James Q. and Osborne, Melissa and Gelles, Jeff and Kondev, Jane and Phillips, Rob", journal = "Cell Reports", volume = "2", number = "1", pages = "150-161", month = "July", year = "2012", doi = "https://doi.org/10.1016/j.celrep.2012.06.004", url = "https://resolver.caltech.edu/CaltechAUTHORS:20120814-102205172", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/32451, title ="A Single-Molecule Hershey-Chase Experiment", author = "Van Valen, David and Wu, David and Chen, Yi-Ju and Tuson, Hannah and Wiggins, Paul and Phillips, Rob", journal = "Current Biology", volume = "22", number = "14", pages = "1339-1343", month = "July", year = "2012", doi = "https://doi.org/10.1016/j.cub.2012.05.023", url = "https://resolver.caltech.edu/CaltechAUTHORS:20120716-083157294", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/32271, title ="Focus on the physics of the cell membrane", author = "Bassereau, Patricia and Phillips, Rob and Schwille, Petra", journal = "New Journal of Physics", volume = "14", pages = "Art. No. 055021", month = "May", year = "2012", doi = "https://doi.org/10.1088/1367-2630/14/5/055021", url = "https://resolver.caltech.edu/CaltechAUTHORS:20120706-080343895", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/31608, title ="Single-Cell Census of Mechanosensitive Channels in Living Bacteria", author = "Bialecka-Fornal, Maja and Lee, Heun Jin and DeBerg, Hannah A. and Gandhi, Chris S. and Phillips, Rob", journal = "PLoS ONE", volume = "7", number = "3", pages = "Art. No. e33077", month = "March", year = "2012", doi = "https://doi.org/10.1371/journal.pone.0033077 ", url = "https://resolver.caltech.edu/CaltechAUTHORS:20120523-100035590", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/31254, title ="Entropic Tension in Crowded Membranes", author = "Lindén, Martin and Sens, Pierre and Phillips, Rob", journal = "PLoS Computational Biology", volume = "8", number = "3", pages = "Art. no. e1002431", month = "March", year = "2012", doi = "https://doi.org/10.1371/journal.pcbi.1002431", url = "https://resolver.caltech.edu/CaltechAUTHORS:20120501-131827231", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/27758, title ="Lipid Bilayer Mechanics in a Pipette with Glass-Bilayer Adhesion", author = "Ursell, Tristan and Agrawal, Ashutosh and Phillips, Rob", journal = "Biophysical Journal", volume = "101", number = "8", pages = "1913-1920", month = "October", year = "2011", url = "https://resolver.caltech.edu/CaltechAUTHORS:20111111-151109702", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/27771, title ="Mechanosensitive Channels: What Can They Do and How Do They Do It?", author = "Haswell, Elizabeth S. and Phillips, Rob and Rees, Douglas C.", journal = "Structure", volume = "19", number = "10", pages = "1356-1369", month = "October", year = "2011", doi = "https://doi.org/10.1016/j.str.2011.09.005 ", url = "https://resolver.caltech.edu/CaltechAUTHORS:20111114-111309696", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/25267, title ="Jonathan Widom (1955–2011)\r\n", author = "Phillips, Rob", journal = "Nature", volume = "476", number = "7361", pages = "400-400", month = "August", year = "2011", url = "https://resolver.caltech.edu/CaltechAUTHORS:20110909-100811989", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/25499, title ="Comparison and Calibration of Different Reporters for Quantitative Analysis of Gene Expression", author = "Garcia, Hernan G. and Lee, Heun Jin and Boedicker, James Q. and Phillips, Rob", journal = "Biophysical Journal", volume = "101", number = "3", pages = "535-544", month = "August", year = "2011", url = "https://resolver.caltech.edu/CaltechAUTHORS:20110929-140259410", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/24609, title ="Quantitative dissection of the simple repression input–output function\r\n", author = "Garcia, Hernan G. and Phillips, Rob", journal = "Proceedings of the National Academy of Sciences of the United States of America", volume = "108", number = "29", pages = "12173-12178", month = "July", year = "2011", doi = "https://doi.org/10.1073/pnas.1015616108", url = "https://resolver.caltech.edu/CaltechAUTHORS:20110801-102535300", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/24515, title ="Building Enhancers from the Ground Up: A Synthetic Biology Approach", author = "Amit, Roee and Garcia, Hernan G. and Phillips, Rob and Fraser, Scott E.", journal = "Cell", volume = "146", number = "1", pages = "105-118", month = "July", year = "2011", doi = "https://doi.org/10.1016/j.cell.2011.06.024", url = "https://resolver.caltech.edu/CaltechAUTHORS:20110725-075342594", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/24314, title ="Probing Individual Environmental Bacteria for Viruses by Using Microfluidic Digital PCR", author = "Tadmor, Arbel D. and Ottesen, Elizabeth A. and Leadbetter, Jared R. and Phillips, Rob", journal = "Science", volume = "333", number = "6038", pages = "58-62", month = "July", year = "2011", doi = "https://doi.org/ 10.1126/science.1200758 ", url = "https://resolver.caltech.edu/CaltechAUTHORS:20110706-095349883", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/24147, title ="Elastic energy of polyhedral bilayer vesicles", author = "Haselwandter, Christoph A. and Phillips, Rob", journal = "Physical Review E", volume = "83", number = "6", pages = "Art. No. 061901", month = "June", year = "2011", doi = "https://doi.org/10.1103/PhysRevE.83.061901", url = "https://resolver.caltech.edu/CaltechAUTHORS:20110621-092111171", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/23424, title ="Effect of Promoter Architecture on the Cell-to-Cell Variability in Gene Expression", author = "Sanchez, Alvaro and Garcia, Hernan G. and Jones, Daniel and Phillips, Rob and Kondev, Jané", journal = "PLoS Computational Biology", volume = "7", number = "3", pages = "Art. No. e1001100", month = "March", year = "2011", doi = "https://doi.org/10.1371/journal.pcbi.1001100", url = "https://resolver.caltech.edu/CaltechAUTHORS:20110422-111812818", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/23105, title ="Morphological Phase Diagram for Lipid Membrane Domains with Entropic Tension", author = "Rim, J. E. and Ursell, T. S. and Phillips, R. and Klug, W. S.", journal = "Physical Review Letters", volume = "106", number = "5", pages = "057801", month = "February", year = "2011", url = "https://resolver.caltech.edu/CaltechAUTHORS:20110324-162735185", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/22033, title ="Transcription by the numbers redux: experiments and calculations that surprise", author = "Garcia, Hernan G. and Sanchez, Alvaro and Kuhlman, Thomas and Kondev, Jane and Phillips, Rob", journal = "Trends in Cell Biology", volume = "20", number = "12", pages = "723-733", month = "December", year = "2010", doi = "https://doi.org/10.1016/j.tcb.2010.07.002 ", url = "https://resolver.caltech.edu/CaltechAUTHORS:20110207-083519894", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/22597, title ="Minimal Bending Energies of Bilayer Polyhedra", author = "Haselwandter, Christoph A. and Phillips, Rob", journal = "Physical Review Letters", volume = "105", number = "22", pages = "Art. No. 228101", month = "November", year = "2010", doi = "https://doi.org/10.1103/PhysRevLett.105.228101", url = "https://resolver.caltech.edu/CaltechAUTHORS:20110302-102608259", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/20269, title ="Dynamical fluctuations in biochemical reactions and cycles", author = "Pressé, S. and Ghosh, K. and Phillips, R. and Dill, K. A.", journal = "Physical Review E", volume = "82", number = "3", pages = "Art. No. 031905", month = "September", year = "2010", url = "https://resolver.caltech.edu/CaltechAUTHORS:20101004-094321543", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/19796, title ="Ion-Dependent Dynamics of DNA Ejections for Bacteriophage λ", author = "Wu, David and Van Valen, David and Hu, Qicong and Phillips, Rob", journal = "Biophysical Journal", volume = "99", number = "4", pages = "1101-1109", month = "August", year = "2010", doi = "https://doi.org/10.1016/j.bpj.2010.06.024 ", url = "https://resolver.caltech.edu/CaltechAUTHORS:20100907-101147251", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/17223, title ="A feeling for the numbers in biology", author = "Phillips, Rob and Milo, Ron", journal = "Proceedings of the National Academy of Sciences of the United States of America", volume = "106", number = "51", pages = "21465-21471", month = "December", year = "2009", doi = "https://doi.org/10.1073/pnas.0907732106 ", url = "https://resolver.caltech.edu/CaltechAUTHORS:20100119-145049392", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/76434, title ="RNA-protein binding kinetics in an automated microfluidic reactor", author = "Ridgeway, William K. and Seitaridou, Effrosyni and Phillips, Rob and Williamson, James R.", journal = "Nucleic Acids Research", volume = "37", number = "21", pages = "e142-e142", month = "November", year = "2009", doi = "https://doi.org/10.1093/nar/gkp733", url = "https://resolver.caltech.edu/CaltechAUTHORS:20170409-072401658", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/17175, title ="RNA–protein binding kinetics in an automated microfluidic reactor", author = "Ridgeway, William K. and Seitaridou, Effrosyni and Phillips, Rob and Williamson, James R.", journal = "Nucleic Acids Research", volume = "37", number = "21", pages = "Art. e142", month = "September", year = "2009", url = "https://resolver.caltech.edu/CaltechAUTHORS:20100114-101620211", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/15439, title ="Morphology and interaction between lipid domains", author = "Ursell, Tristan S. and Klug, William S. and Phillips, Rob", journal = "Proceedings of the National Academy of Sciences of the United States of America", volume = "106", number = "32", pages = "13301-13306", month = "August", year = "2009", doi = "https://doi.org/10.1073/pnas.0903825106", url = "https://resolver.caltech.edu/CaltechAUTHORS:20090828-231031757", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/15083, title ="Trajectory Approach to Two-State Kinetics of Single Particles on Sculpted Energy Landscapes", author = "Wu, David and Ghosh, Kingshuk and Inamdar, Mandar and Lee, Heun Jin and Fraser, Scott and Dill, Ken and Phillips, Rob", journal = "Physical Review Letters", volume = "103", number = "5", pages = "Art. No. 050603", month = "July", year = "2009", doi = "https://doi.org/10.1103/PhysRevLett.103.050603", url = "https://resolver.caltech.edu/CaltechAUTHORS:20090817-144809908", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/14679, title ="Reduced amino acid alphabets exhibit an improved sensitivity and selectivity in fold assignment \r\n \r\n", author = "Peterson, Eric L. and Kondev, Jané and Theriot, Julie A. and Phillips, Rob", journal = "Bioinformatics", volume = "25", number = "11", pages = "1356-1362", month = "June", year = "2009", doi = "https://doi.org/10.1093/bioinformatics/btp164", url = "https://resolver.caltech.edu/CaltechAUTHORS:20090727-143233526", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/15827, title ="First-principles calculation of DNA looping in tethered particle experiments", author = "Towles, Kevin B. and Beausang, John F and Garcia, Hernan G. and Phillips, Rob and Nelson, Philip C.", journal = "Physical Biology", volume = "6", number = "2", pages = "Art. No. 025001", month = "June", year = "2009", url = "https://resolver.caltech.edu/CaltechAUTHORS:20090914-090009819", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/17252, title ="Concentration and Length Dependence of DNA Looping in Transcriptional Regulation", author = "Han, Lin and Garcia, Hernan G. and Blumberg, Seth and Towles, Kevin B. and Beausang, John F. and Nelson, Philip C. and Phillips, Rob", journal = "PLoS ONE", volume = "4", number = "5", pages = "Art. No. e5621", month = "May", year = "2009", doi = "https://doi.org/10.1371/journal.pone.0005621", url = "https://resolver.caltech.edu/CaltechAUTHORS:20100120-154513518", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/15020, title ="Emerging roles for lipids in shaping membrane-protein function", author = "Phillips, Rob and Ursell, Tristan and Wiggins, Paul and Sens, Pierre", journal = "Nature", volume = "459", number = "7245", pages = "379-385", month = "May", year = "2009", doi = "https://doi.org/10.1038/nature08147", url = "https://resolver.caltech.edu/CaltechAUTHORS:20090814-082130740", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/15307, title ="Biochemistry on a Leash: The Roles of Tether Length and Geometry in Signal Integration Proteins", author = "Van Valen, David and Haataja, Mikko and Phillips, Rob", journal = "Biophysical Journal", volume = "96", number = "4", pages = "1275-1292", month = "February", year = "2009", doi = "https://doi.org/10.1016/j.bpj.2008.10.052", url = "https://resolver.caltech.edu/CaltechAUTHORS:20090825-145726010", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/12512, title ="Membrane shape as a reporter for applied forces", author = "Lee, Heun Jin and Peterson, Eric-L and Phillips, Rob and Klug, William S. and Wiggins, Paul A.", journal = "Proceedings of the National Academy of Sciences of the United States of America", volume = "105", number = "49", pages = "19252-19256", month = "December", year = "2008", doi = "https://doi.org/10.1073/pnas.0806814105", url = "https://resolver.caltech.edu/CaltechAUTHORS:LEEpnas08", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/11836, title ="Membrane mechanics as a probe of ion-channel gating mechanisms", author = "Reeves, Daniel and Ursell, Tristan and Sens, Pierre and Kondev, Jane and Phillips, Rob", journal = "Physical Review E", volume = "78", number = "4", pages = "Art. No. 041901", month = "October", year = "2008", url = "https://resolver.caltech.edu/CaltechAUTHORS:REEpre08", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/9785, title ="Real-time observations of single bacteriophage λ DNA ejections in vitro", author = "Grayson, Paul and Han, Lin and Winther, Tabita and Phillips, Rob", journal = "Proceedings of the National Academy of Sciences of the United States of America", volume = "104", number = "37", pages = "14652-14657", month = "September", year = "2007", url = "https://resolver.caltech.edu/CaltechAUTHORS:GRApnas07", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/8064, title ="Cooperative Gating and Spatial Organization of Membrane Proteins through Elastic Interactions", author = "Ursell, Tristan and Huang, Kerwin Casey and Peterson, Eric and Phillips, Rob", journal = "PLOS Computational Biology", volume = "3", number = "5", pages = "803-812", month = "May", year = "2007", doi = "https://doi.org/10.1371/journal.pcbi.0030081", url = "https://resolver.caltech.edu/CaltechAUTHORS:URSploscb07", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/77813, title ="Measuring Flux Distributions for Diffusion in the Small-Numbers Limit", author = "Seitaridou, Effrosyni and Inamdar, Mandar M. and Phillips, Rob and Ghosh, Kingshuk and Dill, Ken", journal = "Journal of Physical Chemistry B", volume = "111", number = "9", pages = "2288-2292", month = "March", year = "2007", doi = "https://doi.org/10.1021/jp067036j", url = "https://resolver.caltech.edu/CaltechAUTHORS:20170526-112238161", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/87222, title ="Biological consequences of tightly bent DNA: The other life of a macromolecular celebrity", author = "Garcia, Hernan G. and Grayson, Paul and Han, Lin and Inamdar, Mandar and Kondev, Jané and Nelson, Philip C. and Phillips, Rob and Widom, Jonathan and Wiggins, Paul A.", journal = "Biopolymers", volume = "85", number = "2", pages = "115-130", month = "February", year = "2007", doi = "https://doi.org/10.1002/bip.20627 ", url = "https://resolver.caltech.edu/CaltechAUTHORS:20180619-104551728", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/56510, title ="High flexibility of DNA on short length scales probed by atomic force microscopy", author = "Wiggins, Paul A. and van der Heijden, Thijn and Moreno-Herrero, Fernando and Spakowitz, Andrew and Phillips, Rob and Widom, Jonathan and Dekker, Cees and Nelson, Philip C.", journal = "Nature Nanotechnology", volume = "1", number = "2", pages = "137-141", month = "November", year = "2006", doi = "https://doi.org/10.1038/nnano.2006.63", url = "https://resolver.caltech.edu/CaltechAUTHORS:20150409-090719819", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/87211, title ="The effect of genome length on ejection forces in bacteriophage lambda", author = "Grayson, Paul and Evilevitch, Alex and Inamdar, Mandar M. and Purohitc, Prashant K. and Gelbart, William M. and Knobler, Charles M. and Phillips, Rob", journal = "Virology", volume = "348", number = "2", pages = "430-436", month = "May", year = "2006", doi = "https://doi.org/10.1016/j.virol.2006.01.003", url = "https://resolver.caltech.edu/CaltechAUTHORS:20180619-083759884", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/3200, title ="The Biological Frontier of Physics", author = "Phillips, Rob and Quake, Stephen R.", journal = "Physics Today", volume = "59", number = "5", pages = "38-43", month = "May", year = "2006", url = "https://resolver.caltech.edu/CaltechAUTHORS:PHIpt06", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/5123, title ="Volume-exclusion effects in tethered-particle experiments: bead size matters", author = "Segall, Darren E. and Nelson, Philip C. and Phillips, Rob", journal = "Physical Review Letters", volume = "96", number = "8", pages = "Art. No. 088306", month = "March", year = "2006", doi = "https://doi.org/10.1103/PhysRevLett.96.088306", url = "https://resolver.caltech.edu/CaltechAUTHORS:SEGprl06", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/2603, title ="Finite-Temperature Quasicontinuum: Molecular Dynamics without All the Atoms", author = "Dupuy, L. M. and Tadmor, E. B. and Miller, R. E. and Phillips, R.", journal = "Physical Review Letters", volume = "95", number = "6", pages = "Art. No. 060202", month = "August", year = "2005", url = "https://resolver.caltech.edu/CaltechAUTHORS:DUPprl05", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/3730, title ="Exact theory of kinkable elastic polymers", author = "Wiggins, Paul A. and Phillips, Rob and Nelson, Philip C.", journal = "Physical Review E", volume = "71", number = "2", pages = "Art. No. 021909", month = "February", year = "2005", doi = "https://doi.org/10.1103/PhysRevE.71.021909", url = "https://resolver.caltech.edu/CaltechAUTHORS:WIGpre05", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/1662, title ="Modelling diffusion in crystals under high internal stress gradients", author = "Olmsted, David L. and Phillips, Rob and Curtin, W. A.", journal = "Modelling and Simulation in Materials Science and Engineering", volume = "12", number = "5", pages = "781-797", month = "September", year = "2004", url = "https://resolver.caltech.edu/CaltechAUTHORS:OLMmsmse04", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/1363, title ="Analytic models for mechanotransduction: gating a mechanosensitive channel", author = "Wiggins, Paul and Phillips, Rob", journal = "Proceedings of the National Academy of Sciences of the United States of America", volume = "101", number = "12", pages = "4071-4076", month = "March", year = "2004", url = "https://resolver.caltech.edu/CaltechAUTHORS:WIGpnas04", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/76193, title ="Force steps during viral DNA packaging?", author = "Purohit, Prashant K. and Kondev, Jané and Phillips, Rob", journal = "Journal of the Mechanics and Physics of Solids", volume = "51", number = "11-12", pages = "2239-2257", month = "November", year = "2003", doi = "https://doi.org/10.1016/j.jmps.2003.09.016", url = "https://resolver.caltech.edu/CaltechAUTHORS:20170408-162850097", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/1420, title ="Mechanics of DNA packaging in viruses", author = "Purohit, Prashant K. and Kondev, Jané and Phillips, Rob", journal = "Proceedings of the National Academy of Sciences of the United States of America", volume = "100", number = "6", pages = "3173-3178", month = "March", year = "2003", url = "https://resolver.caltech.edu/CaltechAUTHORS:PURpnas03", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/3888, title ="Quasicontinuum representations of atomic-scale mechanics: From proteins to dislocations", author = "Phillips, Rob and Dittrich, ­Markus and Schulten, ­Klaus", journal = "Annual Review of Materials Research", volume = "32", pages = "219-233", month = "August", year = "2002", doi = "https://doi.org/10.1146/annurev.matsci.32.122001.102202", url = "https://resolver.caltech.edu/CaltechAUTHORS:PHIarmr02", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/27544, title ="Dislocation plasticity in thin metal films", author = "Kraft, O. and Freund, L. B. and Phillips, R. and Arzt, E.", journal = "MRS Bulletin", volume = "27", number = "1", pages = "30-37", month = "January", year = "2002", url = "https://resolver.caltech.edu/CaltechAUTHORS:20111101-090938695", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/1661, title ="Lattice resistance and Peierls stress in finite size atomistic dislocation simulations", author = "Olmsted, David L. and Hardikar, Kedar Y. and Phillips, Rob", journal = "Modelling and Simulation in Materials Science and Engineering", volume = "9", number = "3", pages = "215-247", month = "May", year = "2001", url = "https://resolver.caltech.edu/CaltechAUTHORS:OLMmsmse01", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/83847, title ="Hierarchical modeling in the mechanics of materials", author = "Tadmor, E. B. and Phillips, R. and Ortiz, M.", journal = "International Journal of Solids and Structures", volume = "37", number = "1-2", pages = "379-389", month = "January", year = "2000", doi = "https://doi.org/10.1016/S0020-7683(99)00095-5", url = "https://resolver.caltech.edu/CaltechAUTHORS:20171212-153930662", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/1663, title ="Hierarchical models of plasticity: dislocation nucleation and interaction", author = "Phillips, Rob and Rodney, David and Shenoy, Vivek and Tadmor, Ellad and Ortiz, Michael", journal = "Modelling and Simulation in Materials Science and Engineering", volume = "7", number = "5", pages = "769-780", month = "September", year = "1999", url = "https://resolver.caltech.edu/CaltechAUTHORS:PHImsmse99", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/7524, title ="The atomistic structure and energy of nascent dislocation loops", author = "Shenoy, V. B. and Ortiz, M. and Phillips, R.", journal = "Modelling and Simulation in Materials Science and Engineering", volume = "7", number = "4", pages = "603-619", month = "July", year = "1999", url = "https://resolver.caltech.edu/CaltechAUTHORS:SHEmsmse99", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/5010, title ="Nanoindentation and incipient plasticity", author = "Tadmor, E.B. and Miller, R. and Phillips, R. and Ortiz, M.", journal = "Journal of Materials Research", volume = "14", number = "6", pages = "2233-2250", month = "June", year = "1999", url = "https://resolver.caltech.edu/CaltechAUTHORS:TADjmr99", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/83873, title ="A non-local formulation of the Peierls dislocation model", author = "Miller, Ron and Phillips, Rob and Beltz, Glen and Ortiz, Michael", journal = "Journal of the Mechanics and Physics of Solids", volume = "46", number = "10", pages = "1845-1867", month = "October", year = "1998", doi = "https://doi.org/10.1016/S0022-5096(98)00057-X", url = "https://resolver.caltech.edu/CaltechAUTHORS:20171213-100338338", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/83874, title ="Quasicontinuum models of fracture and plasticity", author = "Miller, R. and Ortiz, M. and Phillips, R. and Shenoy, V. and Tadmor, E. B.", journal = "Engineering Fracture Mechanics", volume = "61", number = "3-4", pages = "427-444", month = "September", year = "1998", doi = "https://doi.org/10.1016/S0013-7944(98)00047-2", url = "https://resolver.caltech.edu/CaltechAUTHORS:20171213-100643529", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/1664, title ="Quasicontinuum simulation of fracture at the atomic scale", author = "Miller, R. and Tadmor, E. B. and Phillips, R. and Ortiz, M.", journal = "Modelling and Simulation in Materials Science and Engineering", volume = "6", number = "5", pages = "607-638", month = "September", year = "1998", url = "https://resolver.caltech.edu/CaltechAUTHORS:MILmsmse98", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/6522, title ="Quasicontinuum Models of Interfacial Structure and Deformation", author = "Shenoy, V. B. and Miller, R. and Tadmor, E. B. and Phillips, R. and Ortiz, M.", journal = "Physical Review Letters", volume = "08", number = "4", pages = "742-745", month = "January", year = "1998", url = "https://resolver.caltech.edu/CaltechAUTHORS:SHEprl98", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/67730, title ="Mixed Atomistic and Continuum Models of Deformation in Solids", author = "Tadmor, E. B. and Phillips, Rob and Ortiz, M.", journal = "Langmuir", volume = "12", number = "19", pages = "4529-4534", month = "September", year = "1996", doi = "https://doi.org/10.1021/la9508912", url = "https://resolver.caltech.edu/CaltechAUTHORS:20160607-114810939", } @article {CaltechAUTHORS_https://authors.library.caltech.edu/id/eprint/83890, title ="Quasicontinuum analysis of defects in solids", author = "Tadmor, E. B. and Ortiz, M. and Phillips, R.", journal = "Philosophical Magazine A", volume = "73", number = "6", pages = "1529-1563", month = "June", year = "1996", doi = "https://doi.org/10.1080/01418619608243000", url = "https://resolver.caltech.edu/CaltechAUTHORS:20171213-150724557", }