Peter, Isabelle S.

Combined from CaltechAUTHORS

• Feuda, Roberto and Peter, Isabelle S. (2022) Homologous gene regulatory networks control development of apical organs and brains in Bilateria; Science Advances; Vol. 8; No. 44; Art. No. eabo2416; PMCID PMC9629743; 10.1126/sciadv.abo2416
• Valencia, Jonathan E. and Feuda, Roberto, et el. (2021) Ciliary photoreceptors in sea urchin larvae indicate pan-deuterostome cell type conservation; BMC Biology; Vol. 19; Art. No. 257; PMCID PMC8642985; 10.1186/s12915-021-01194-y
• Peter, Isabelle S. (2020) Preface; ISBN 978-0-12-813180-0; Gene Regulatory Networks; xiii-xv; 10.1016/s0070-2153(20)30074-0
• Peter, Isabelle S. (2020) The function of architecture and logic in developmental gene regulatory networks; ISBN 978-0-12-813180-0; Gene Regulatory Networks; 267-295; 10.1016/bs.ctdb.2020.04.001
• Istrail, Sorin and Peter, Isabelle S. (2019) How Does the Regulatory Genome Work?; Journal of Computational Biology; Vol. 26; No. 7; 685-695; PMCID PMC6661970; 10.1089/cmb.2019.0097
• Erkenbrack, Eric M. and Davidson, Eric H., et el. (2018) Conserved regulatory state expression controlled by divergent developmental gene regulatory networks in echinoids; Development; Vol. 145; No. 24; Art. No. dev167288; PMCID PMC6307887; 10.1242/dev.167288
• Peter, Isabelle S. (2018) Methods for the experimental and computational analysis of gene regulatory networks in sea urchins; ISBN 9780128170724; Echinoderms, Part B; 89-113; 10.1016/bs.mcb.2018.10.003
• Peter, Isabelle S. (2017) Regulatory states in the developmental control of gene expression; Briefings in Functional Genomics; Vol. 16; No. 5; 281-287; PMCID PMC5860005; 10.1093/bfgp/elx009
• Peter, Isabelle S. and Davidson, Eric H. (2017) Assessing regulatory information in developmental gene regulatory networks; Proceedings of the National Academy of Sciences of the United States of America; Vol. 114; No. 23; 5862-5869; PMCID PMC5468647; 10.1073/pnas.1610616114
• Cui, Miao and Vielmas, Erika, et el. (2017) Sequential Response to Multiple Developmental Network Circuits Encoded in an Intronic cis- Regulatory Module of Sea Urchin hox11/13b; Cell Reports; Vol. 19; No. 2; 364-374; 10.1016/j.celrep.2017.03.039
• Peter, Isabelle S. (2016) A View on Systems Biology Beyond Scale and Method; ISBN 978-3-319-46999-7; Philosophy of Systems Biology: Perspectives from Scientists and Philosophers; 237-245; 10.1007/978-3-319-47000-9_22
• Peter, Isabelle S. (2016) Eric Davidson. A genomic control odyssey; Developmental Biology; Vol. 412; No. 2; S41-S44; 10.1016/j.ydbio.2016.01.027
• Peter, Isabelle S. and Davidson, Eric H. (2016) Implications of Developmental Gene Regulatory Networks Inside and Outside Developmental Biology; ISBN 9780128013823; Essays on Developmental Biology; 237-251; 10.1016/bs.ctdb.2015.12.014
• Peter, Isabelle S. and Davidson, Eric H. (2015) Genomic Control Process: Development and Evolution; ISBN 978-0-12-404729-7
• Cui, Miao and Siriwon, Natnaree, et el. (2014) Specific functions of the Wnt signaling system in gene regulatory networks throughout the early sea urchin embryo; Proceedings of the National Academy of Sciences of the United States of America; Vol. 111; No. 47; E5029-E5038; PMCID PMC4250154; 10.1073/pnas.1419141111
• Li, Enhu and Cui, Miao, et el. (2014) Encoding regulatory state boundaries in the pregastrular oral ectoderm of the sea urchin embryo; Proceedings of the National Academy of Sciences of the United States of America; Vol. 111; No. 10; E906-E913; PMCID PMC3956148; 10.1073/pnas.1323105111
• Faure, Emmanuel and Peter, Isabelle S., et el. (2013) A New Software Package for Predictive Gene Regulatory Network Modeling and Redesign; Journal of Computational Biology; Vol. 20; No. 6; 419-423; PMCID PMC3667423; 10.1089/cmb.2012.0297
• Peter, Isabelle S. and Faure, Emmanuel, et el. (2012) Predictive computation of genomic logic processing functions in embryonic development; Proceedings of the National Academy of Sciences of the United States of America; Vol. 109; No. 41; 16434-16442; PMCID PMC3478651; 10.1073/pnas.1207852109
• Peter, Isabelle S. and Davidson, Eric H. (2012) Pattern Formation in Sea Urchin Endomesoderm as Instructed by Gene Regulatory Network Topologies; ISBN 978-3-642-20163-9; Pattern Formation in Morphogenesis: Problems and Mathematical Issues; 75-92; 10.1007/978-3-642-20164-6_8
• Royo, José Luis and Maeso, Ignacio, et el. (2011) Transphyletic conservation of developmental regulatory state in animal evolution; Proceedings of the National Academy of Sciences of the United States of America; Vol. 108; No. 34; 14186-14191; PMCID PMC3161536; 10.1073/pnas.1109037108
• Peter, Isabelle S. and Davidson, Eric H. (2011) A gene regulatory network controlling the embryonic specification of endoderm; Nature; Vol. 474; No. 7353; 635-639; PMCID PMC3976212; 10.1038/nature10100
• Peter, Isabelle S. and Davidson, Eric H. (2011) Evolution of Gene Regulatory Networks Controlling Body Plan Development; Cell; Vol. 144; No. 6; 970-985; PMCID PMC3076009; 10.1016/j.cell.2011.02.017
• Peter, Isabelle S. and Davidson, Eric H. (2010) The endoderm gene regulatory network in sea urchin embryos up to mid-blastula stage; Developmental Biology; Vol. 340; No. 2; 188-199; PMCID PMC3981691; 10.1016/j.ydbio.2009.10.037
• Peter, Isabelle S. and Davidson, Eric H. (2009) Modularity and design principles in the sea urchin embryo gene regulatory network; FEBS Letters; Vol. 583; No. 24; 3948-3958; PMCID PMC2810318; 10.1016/j.febslet.2009.11.060
• Peter, Isabelle S. and Davidson, Eric H. (2009) Genomic control of patterning; International Journal of Developmental Biology; Vol. 53; No. 5-6; 707-716; PMCID PMC3967875; 10.1387/ijdb.072495ip