@data{ 
    title = "ECCITE-seq protein and mRNA counts",
    authors = "Gorin, Gennady andSvensson, Valentine andPachter, Lior",
    
    abstract ="Protein data were acquired from https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM3596101, file GSM3596101_CTCL-ADT-count.csv.gz.\n\nvelocyto processing:\n\nvelocyto run (bam directory)/(BAM file).bam (transcriptome directory)/genes/genes.gtf\n",
    year = "2020",
}


@data{ 
    title = "REAP-seq protein and mRNA counts",
    authors = "Gorin, Gennady andSvensson, Valentine andPachter, Lior",
    
    abstract ="Protein count data were acquired from https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM2685243, file GSM2685243_protein_2_PBMCs_matrix.txt.gz, and processed into csv format.\n\nAligned bam file was acquired from https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM2685238, file mRNA_2_PBMCs_possorted_genome_bam.bam.\n\nvelocyto processing:\n\nvelocyto run (bam directory)/mRNA_2_PBMCs_possorted_genome_bam.bam(transcriptome directory)/genes/genes.gtf",
    year = "2020",
}


@data{ 
    title = "CITE-seq protein and mRNA counts",
    authors = "Gorin, Gennady andSvensson, Valentine andPachter, Lior",
    
    abstract ="Protein counts were acquired from https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE100866.\n\nLOOM was generated from FASTQ.\ncellranger processing:\n\ncellranger count --id=(desired bam directory) --transcriptome=(transcriptome directory) --fastqs=(fastq directory) --localcores=40 --localmem=100 --chemistry=SC3Pv2\n\nvelocyto processing:\n\nvelocyto run10x --samtools-threads 60 --samtools-memory 5000 (desired bam directory) (transcriptome directory)/genes/genes.gtf",
    year = "2020",
}


@data{ 
    title = "10X protein and mRNA counts",
    authors = "Gorin, Gennady andSvensson, Valentine andPachter, Lior",
    
    abstract ="Dataset for \"Protein velocity and acceleration from single-cell multiomics experiments.\" Source data from 10X Genomics at https://support.10xgenomics.com/single-cell-gene-expression/datasets/3.0.0/pbmc_1k_protein_v3 and https://support.10xgenomics.com/single-cell-gene-expression/datasets/3.0.0/pbmc_10k_protein_v3. ",
    year = "2020",
}