Singer, Meromit; Pachter, Lior (2014) Bayesian Networks in the Study of Genome-wide DNA Methylation Probabilistic Graphical Models for Genetics, Genomics, and Postgenomics;

Mortimer, Stefanie A.; Trapnell, Cole et al. (2012) SHAPE-Seq: High-Throughput RNA Structure Analysis Current Protocols in Chemical Biology;

Aviran, Sharon; Lucks, Julius B. et al. (2011) RNA structure characterization from chemical mapping experiments 49th Annual Allerton Conference on Communication, Control, and Computing; 49th Annual Allerton Conference on Communication, Control, and Computing, September 28-30, 2011 , Monticello, IL

Pachter, Lior (2007) An introduction to reconstructing ancestral genomes Modeling and Simulation of Biological Networks; Series.Proceedings of Symposia in Applied Mathematics; No. 64;

Morton, Jason; Pachter, Lior et al. (2006) Geometry of rank tests Proceedings of the 3rd European Workshop on Probabilistic Graphical Models; 3rd European Workshop on Probabilistic Graphical Models (PGM'06), 12-15 September 2006 , Prague, Czech Republic

Snir, Sagi; Pachter, Lior (2006) Phylogenetic Profiling of Insertions and Deletions in Vertebrate Genomes Research in Computational Molecular Biology; Series.Lecture Notes in Computer Science; No. 3909; 10th Annual International Conference on Research in Computational Molecular Biology (RECOMB 2006), April 2-5, 2006 , Venice, Italy

Alexandersson, Marina; Bray, Nicolas et al. (2005) Pair hidden Markov models Encyclopedia of Genetics, Genomics, Proteomics and Bioinformatics;

Chatterji, Sourav; Pachter, Lior (2004) Multiple organism gene finding by collapsed Gibbs sampling Proceedings of the eighth annual international conference on Computational molecular biology (RECOMB '04); 8th Annual International Conference on Research in Computational Molecular Biology (RECOMB '04), March 27-31, 2004 , San Diego, CA

Pachter, Lior; Lam, Fumei et al. (2002) Picking alignments from (Steiner) trees Proceedings of the sixth annual international conference on Computational biology (RECOMB '02); 6th annual international conference on Computational biology (RECOMB '02), April 18-21, 2002 , Washington, DC

Pachter, L. S.; Pachter, M. (2001) Optimal paths for avoiding a radiating source Proceedings of the 40th IEEE Conference on Decision and Control; Vol. 4; 40th IEEE Conference on Decision and Control, 4-7 December 2001 , Orlando, FL

Pachter, Lior; Alexandersson, Marina et al. (2001) Applications of generalized pair hidden Markov models to alignment and gene finding problems Proceedings of the fifth annual international conference on Computational biology (RECOMB '01); 5th annual international conference on Computational biology (RECOMB '01), April 22-25, 2001 , Montreal, Canada

Batzoglou, Serafim; Pachter, Lior et al. (2000) Human and mouse gene structure: comparative analysis and application to exon prediction Proceedings of the fourth annual international conference on Computational molecular biology (RECOMB '00); 4th annual international conference on Computational molecular biology (RECOMB '00), April 8-11, 2000 , Tokyo, Japan

Pachter, Lior; Batzoglou, Serafim et al. (1999) A dictionary based approach for gene annotation Proceedings of the third annual international conference on Computational molecular biology (RECOMB '99); 3rd annual international conference on Computational molecular biology (RECOMB '99), April 11-14, 1999 , Lyon, France

Pachter, Lior; Snevily, Hunter S. et al. (1995) On pebbling graphs Proceedings of the Twenty-sixth Southeastern International Conference on Combinatorics, Graph Theory and Computing; Series.Congressus Numerantium; No. 107; 26th Southeastern International Conference on Combinatorics, Graph Theory and Computing., March 6–10, 1995 , Boca Raton, FL