- Singer, Meromit and Pachter, Lior (2014) Bayesian
Networks in the Study of Genome-wide DNA Methylation; ISBN
9780198709022; Probabilistic Graphical Models for Genetics, Genomics,
and Postgenomics; Oxford University Press: New York, NY; 363-386; 10.1093/acprof:oso/9780198709022.003.0014
- Mortimer, Stefanie A.; Trapnell, Cole; et el. (2012) SHAPE-Seq:
High-Throughput RNA Structure Analysis; ISBN 9780470559277; Current
Protocols in Chemical Biology; John Wiley and Sons: New York, NY;
275-297; 10.1002/9780470559277.ch120019
- Aviran, Sharon; Lucks, Julius B.; et el. (2011) RNA
structure characterization from chemical mapping experiments; ISBN
978-1-4577-1817-5; 49th Annual Allerton Conference on Communication,
Control, and Computing; IEEE: Piscataway, NJ; 1743-1750; 10.1109/Allerton.2011.6120379
- Pachter, Lior (2007) An
introduction to reconstructing ancestral genomes; ISBN
978-0-8218-3964-5; Modeling and Simulation of Biological Networks;
American Mathematical Society: Providence, RI; 10-29; 10.48550/arXiv.0612046
- Morton, Jason; Pachter, Lior; et el. (2006) Geometry
of rank tests; ISBN 9788086742144; Proceedings of the 3rd European
Workshop on Probabilistic Graphical Models; Action M Agency: Prague,
Czech Republic; Art. No.7; 10.48550/arXiv.0605173
- Snir, Sagi and Pachter, Lior (2006) Phylogenetic
Profiling of Insertions and Deletions in Vertebrate Genomes; ISBN
978-3-540-33295-4; Research in Computational Molecular Biology;
Springer: Berlin; 265-280; 10.1007/11732990_23
- Alexandersson, Marina; Bray, Nicolas; et el. (2005) Pair
hidden Markov models; ISBN 9780470011539; Encyclopedia of Genetics,
Genomics, Proteomics and Bioinformatics; Wiley: New York, NY; Art.
No. 4:4.2:17; 10.1002/047001153X.g402215
- Chatterji, Sourav and Pachter, Lior (2004) Multiple
organism gene finding by collapsed Gibbs sampling; ISBN
1-58113-755-9; Proceedings of the eighth annual international conference
on Computational molecular biology (RECOMB ’04); ACM: New York, NY;
187-193; 10.1145/974614.974639
- Pachter, Lior; Lam, Fumei; et el. (2002) Picking
alignments from (Steiner) trees; ISBN 1-58113-498-3; Proceedings of
the sixth annual international conference on Computational biology
(RECOMB ’02); ACM: New York, NY; 246-253; 10.1145/565196.565228
- Pachter, L. S. and Pachter, M. (2001) Optimal
paths for avoiding a radiating source; ISBN 9780780370616;
Proceedings of the 40th IEEE Conference on Decision and Control :
December 4-7, 2001 : Hyatt Regency Grand Cypress, Orlando, Florida, USA;
IEEE: Piscataway, NJ; 3581-3586; 10.1109/CDC.2001.980415
- Pachter, Lior; Alexandersson, Marina; et el. (2001) Applications
of generalized pair hidden Markov models to alignment and gene finding
problems; ISBN 1-58113-353-7; Proceedings of the fifth annual
international conference on Computational biology (RECOMB ’01); ACM: New
York, NY; 241-248; 10.1145/369133.369227
- Batzoglou, Serafim; Pachter, Lior; et el. (2000) Human
and mouse gene structure: comparative analysis and application to exon
prediction; ISBN 1-58113-186-0; Proceedings of the fourth annual
international conference on Computational molecular biology (RECOMB
’00); ACM: New York, NY; 46-53; 10.1145/332306.332326
- Pachter, Lior; Batzoglou, Serafim; et el. (1999) A
dictionary based approach for gene annotation; ISBN 1-58113-069-4;
Proceedings of the third annual international conference on
Computational molecular biology (RECOMB ’99); ACM: New York, NY;
285-294; 10.1145/299432.299504
- Pachter, Lior; Snevily, Hunter S.; et el. (1995) On
pebbling graphs