<h1>Murray, Richard</h1>
<h2>Monograph from <a href="https://authors.library.caltech.edu">CaltechAUTHORS</a></h2>
<ul>
<li>Marken, John P. and Maxon, Mary E., el al. (2024) <a href="https://authors.library.caltech.edu/records/hb9x2-t0n76">Policy Recommendations for the Regulation of Engineered Microbes for Environmental Release</a>; <a href="https://doi.org/10.57959/bgny-v542">10.57959/bgny-v542</a></li>
<li>Martinez, Zachary A and Murray, Richard M., el al. (2023) <a href="https://authors.library.caltech.edu/records/0p6md-nzv84">TRILL: Orchestrating Modular Deep-Learning Workflows for Democratized, Scalable Protein Analysis and Engineering</a>; bioRxiv; 2023.10.24.563881; PMCID PMC10659302; <a href="https://doi.org/10.1101/2023.10.24.563881">10.1101/2023.10.24.563881</a></li>
<li>Kapasiawala, Manisha and Murray, Richard M. (2023) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20230327-442725000.2">Probing metabolism in an E. coli-based cell-free system reveals a trade-off between transcription and translation</a>; <a href="https://doi.org/10.1101/2023.03.22.533877">10.1101/2023.03.22.533877</a></li>
<li>Akella, Prithvi and Ahmadi, Mohamadreza, el al. (2023) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20230316-204032253">Barrier-Based Test Synthesis for Safety-Critical Systems Subject to Timed Reach-Avoid Specifications</a></li>
<li>Marken, John P. and Murray, Richard M. (2022) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20230316-182856000.69">Addressable and adaptable intercellular communication via DNA messaging</a>; <a href="https://doi.org/10.1101/2022.11.17.516988">10.1101/2022.11.17.516988</a></li>
<li>Badithela, Apurva and Wongpiromsarn, Tichakorn, el al. (2022) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20221219-234021838">Evaluation Metrics for Object Detection for Autonomous Systems</a>; <a href="https://doi.org/10.48550/arXiv.2210.10298">10.48550/arXiv.2210.10298</a></li>
<li>Badithela, Apurva and Graebener, Josefine B., el al. (2022) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20221219-234102223">Synthesizing Reactive Test Environments for Autonomous Systems: Testing Reach-Avoid Specifications with Multi-Commodity Flows</a>; <a href="https://doi.org/10.48550/arXiv.2210.10304">10.48550/arXiv.2210.10304</a></li>
<li>Pandey, Ayush and Rodriguez, Makena L., el al. (2022) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20230322-366884000.3">Characterization of Integrase and Excisionase Activity in Cell-free Protein Expression System Using a Modeling and Analysis Pipeline</a>; <a href="https://doi.org/10.1101/2022.10.05.511053">10.1101/2022.10.05.511053</a></li>
<li>Han, SooJean and Effros, Michelle, el al. (2022) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20221219-234018464">OUTformation: Distributed Data-Gathering with Feedback under Unknown Environment and Communication Delay Constraints</a>; <a href="https://doi.org/10.48550/arXiv.2208.06395">10.48550/arXiv.2208.06395</a></li>
<li>Pandey, Ayush and Incer, Inigo, el al. (2022) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20220412-265499000">From Specification to Implementation: Assume-Guarantee Contracts for Synthetic Biology</a>; <a href="https://doi.org/10.1101/2022.04.08.487709">10.1101/2022.04.08.487709</a></li>
<li>Daş, Ersin and Murray, Richard M. (2022) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20220224-200901027">Robust Safe Control Synthesis with Disturbance Observer-Based Control Barrier Functions</a>; <a href="https://doi.org/10.48550/arXiv.2201.05758">10.48550/arXiv.2201.05758</a></li>
<li>Clamons, Samuel E. and Murray, Richard M. (2021) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20210929-174530596">How to model DNA replication in stochastic models of synthetic gene circuits (and why)</a>; <a href="https://doi.org/10.1101/2021.09.26.461880">10.1101/2021.09.26.461880</a></li>
<li>Hu, Chelsea Y. and Murray, Richard M. (2021) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20210914-194152756">Layered Feedback Control Overcomes Performance Trade-off in Synthetic Biomolecular Networks</a>; <a href="https://doi.org/10.1101/2021.09.12.459953">10.1101/2021.09.12.459953</a></li>
<li>Ahmadi, Mohamadreza and Rosolia, Ugo, el al. (2021) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20220224-200812106">Risk-Averse Decision Making Under Uncertainty</a>; <a href="https://doi.org/10.48550/arXiv.2109.04082">10.48550/arXiv.2109.04082</a></li>
<li>Badithela, Apurva and Murray, Richard M. (2021) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20220224-200808616">Synthesis of Static Test Environments for Observing Sequence-like Behaviors in Autonomous Systems</a>; <a href="https://doi.org/10.48550/arXiv.2108.05911">10.48550/arXiv.2108.05911</a></li>
<li>McManus, John B. and Bernhards, Casey B., el al. (2021) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20210506-075939102">A Method for Cost-Effective and Rapid Characterization of Genetic Parts</a>; <a href="https://doi.org/10.1101/2021.04.30.440836">10.1101/2021.04.30.440836</a></li>
<li>Graebener, Josefine B. and Phan-Minh, Tung, el al. (2021) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20210511-092411322">Failure-Tolerant Contract-Based Design of an Automated Valet Parking System using a Directive-Response Architecture</a>; <a href="https://doi.org/10.48550/arXiv.2103.12919">10.48550/arXiv.2103.12919</a></li>
<li>Walton, Sophie J. and Clamons, Samuel E., el al. (2020) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20201221-102922403">Analysis of Circuits for Dosage Control in Microbial Populations</a>; <a href="https://doi.org/10.1101/2020.12.18.423556">10.1101/2020.12.18.423556</a></li>
<li>Cai, Karena X. and Phan-Minh, Tung, el al. (2020) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20210120-165255737">Rules of the Road: Towards Safety and Liveness Guarantees for Autonomous Vehicles</a>; <a href="https://doi.org/10.48550/arXiv.2011.14148">10.48550/arXiv.2011.14148</a></li>
<li>Pandey, Ayush and Murray, Richard M. (2020) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20201207-130405486">A two-state ribosome and protein model can robustly capture the chemical reaction dynamics of gene expression</a>; <a href="https://doi.org/10.1101/2020.11.25.399287">10.1101/2020.11.25.399287</a></li>
<li>Merk, Liana N. and Shur, Andrey S., el al. (2020) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20201111-100159834">Engineering Logical Inflammation Sensing Circuit for Modulating Gut Conditions</a>; <a href="https://doi.org/10.1101/2020.11.10.377085">10.1101/2020.11.10.377085</a></li>
<li>Chen, Yuxiao and Rosolia, Ugo, el al. (2020) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20210120-165252232">Reactive motion planning with probabilistic safety guarantees</a>; <a href="https://doi.org/10.48550/arXiv.2011.03590">10.48550/arXiv.2011.03590</a></li>
<li>Ren, Xinying and Murray, Richard M. (2020) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20200327-083242603">Layered Feedback Control Improves Robust Functionality across Heterogeneous Cell Populations</a>; <a href="https://doi.org/10.1101/2020.03.24.006528">10.1101/2020.03.24.006528</a></li>
<li>Pandey, Ayush and Murray, Richard M. (2020) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20200220-154511531">Model Reduction Tools For Phenomenological Modeling of Input-Controlled Biological Circuits</a>; <a href="https://doi.org/10.1101/2020.02.15.950840">10.1101/2020.02.15.950840</a></li>
<li>Marken, John P. and Xiao, Fangzhou, el al. (2020) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20200220-083645813">A geometric and structural approach to the analysis and design of biological circuit dynamics: a theory tailored for synthetic biology</a>; <a href="https://doi.org/10.1101/2020.02.18.953620">10.1101/2020.02.18.953620</a></li>
<li>Mayalu, Michaëlle N. and Murray, Richard M. (2020) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20200128-150452496">Theoretical Design of Paradoxical Signaling-Based Synthetic Population Control Circuit in E. coli</a>; <a href="https://doi.org/10.1101/2020.01.27.921734">10.1101/2020.01.27.921734</a></li>
<li>Chen, Yuxiao and Dathathri, Sumanth, el al. (2020) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20200402-143200982">Counter-example Guided Learning of Bounds on Environment Behavior</a>; <a href="https://doi.org/10.48550/arXiv.2001.07233">10.48550/arXiv.2001.07233</a></li>
<li>Larsson, Elin M. and McManus, John B., el al. (2019) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20191202-140340910">Construction of an inducible amyloid expression circuit in Bacillus megaterium: A case study with CsgA and TasA</a>; <a href="https://doi.org/10.1101/858266">10.1101/858266</a></li>
<li>Clamons, Samuel and Murray, Richard (2019) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20190731-095458774">Modeling predicts that CRISPR-based activators, unlike CRISPR-based repressors, scale well with increasing gRNA competition and dCas9 bottlenecking</a>; <a href="https://doi.org/10.1101/719278">10.1101/719278</a></li>
<li>Singhal, Vipul and Murray, Richard M. (2019) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20200131-124409997">Cell-Free Extract Data Variability Reduction in the Presence of Structural Non-Identifiability</a></li>
<li>Green, Leopold N. and Hu, Chelsea Y., el al. (2019) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20190604-143031841">Bacterial Controller Aided Wound Healing: A Case Study in Dynamical Population Controller Design</a>; <a href="https://doi.org/10.1101/659714">10.1101/659714</a></li>
<li>Hu, Chelsea Y. and Murray, Richard M. (2019) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20190528-093001677">Design of a genetic layered feedback controller in synthetic biological circuitry</a>; <a href="https://doi.org/10.1101/647057">10.1101/647057</a></li>
<li>Pandey, Ayush and Murray, Richard M. (2019) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20190517-100226134">An automated model reduction tool to guide the design and analysis of synthetic biological circuits</a>; <a href="https://doi.org/10.1101/640276">10.1101/640276</a></li>
<li>McCardell, Reed D. and Pandey, Ayush, el al. (2019) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20200131-092300001">Control of density and composition in an engineered two-member bacterial community</a>; <a href="https://doi.org/10.1101/632174">10.1101/632174</a></li>
<li>Williams, Rory L. and Murray, Richard M. (2019) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20190422-091140053">Integrase-mediated differentiation circuits improve evolutionary stability of burdensome and toxic functions in E. coli</a>; <a href="https://doi.org/10.1101/614529">10.1101/614529</a></li>
<li>Halleran, Andrew D. and Flores-Bautista, Emanuel, el al. (2019) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20190402-080939441">Quantitative characterization of random partitioning in the evolution of plasmid-encoded traits</a>; <a href="https://doi.org/10.1101/594879">10.1101/594879</a></li>
<li>Marken, John P. and Murray, Richard M. (2019) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20190328-093304845">Addressable, &quot;Packet-Based&quot; Intercellular Communication through Plasmid Conjugation</a>; <a href="https://doi.org/10.1101/591552">10.1101/591552</a></li>
<li>Ge, Jin I. and Murray, Richard M. (2018) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20191029-152953038">Voluntary lane-change policy synthesis with reactive control
improvisation</a></li>
<li>Baetica, Ania-Ariadna and Leong, Yoke Peng, el al. (2018) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20181107-093406633">Design Guidelines For Sequestration Feedback Networks</a>; <a href="https://doi.org/10.1101/455493">10.1101/455493</a></li>
<li>Catanach, Thomas A. and McCardell, Reed, el al. (2018) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20181008-162020352">Context Dependence of Biological Circuits</a>; <a href="https://doi.org/10.1101/360040">10.1101/360040</a></li>
<li>Parkin, James M. and Murray, Richard M. (2018) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20181030-140537131">Long-distance communication in synthetic bacterial consortia through active signal propagation</a>; <a href="https://doi.org/10.1101/321307">10.1101/321307</a></li>
<li>Dathathri, Sumanth and Zheng, Stephan, el al. (2018) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20190205-112328842">Detecting Adversarial Examples via Neural Fingerprinting</a>; <a href="https://doi.org/10.48550/arXiv.1803.03870">10.48550/arXiv.1803.03870</a></li>
<li>Filippidis, Ioannis and Murray, Richard M. (2017) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20200131-145354147">Hiding variables when decomposing specifications into GR(1) contracts</a></li>
<li>Clamons, Samuel and Murray, Richard M. (2017) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20181031-100007899">Modeling Dynamic Transcriptional Circuits with CRISPRi</a>; <a href="https://doi.org/10.1101/225318">10.1101/225318</a></li>
<li>McCardell, Reed D. and Huang, Shan, el al. (2017) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20181029-141247546">Control of bacterial population density with population feedback and molecular sequestration</a>; <a href="https://doi.org/10.1101/225045">10.1101/225045</a></li>
<li>Shur, Andrey and Murray, Richard M. (2017) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20181031-100430313">Proof of concept continuous event logging in living cells</a>; <a href="https://doi.org/10.1101/225151">10.1101/225151</a></li>
<li>Olsman, Noah and Baetica, Ania-Ariadna, el al. (2017) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20180927-114225422">Hard Limits And Performance Tradeoffs In A Class Of Sequestration Feedback Systems</a>; <a href="https://doi.org/10.1101/222042">10.1101/222042</a></li>
<li>Doong, Joy and Parkin, James, el al. (2017) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20181031-100811065">Length and time scales of cell-cell signaling circuits in agar</a>; <a href="https://doi.org/10.1101/220244">10.1101/220244</a></li>
<li>Wu, Yong Y. and Sato, Hirokazu, el al. (2017) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20180430-092750634">System-level studies of a cell-free transcription-translation platform for metabolic engineering</a>; <a href="https://doi.org/10.1101/172007">10.1101/172007</a></li>
<li>Guo, Shaobin and Murray, Richard M. (2017) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20170705-110144869">Prototyping And Implementation Of A Novel Feedforward Loop In A Cell-Free Transcription-Translation System And Cells</a>; <a href="https://doi.org/10.1101/123190">10.1101/123190</a></li>
<li>Guo, Shaobin and Yeung, Enoch, el al. (2017) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20170705-103731007">Implementation and System Identification of a Phosphorylation-Based Insulator in a Cell-Free Transcription-Translation System</a>; <a href="https://doi.org/10.1101/122606">10.1101/122606</a></li>
<li>Arichega, Nikos and Dathathri, Sumanth, el al. (2017) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20200131-144053728">Fast Automatic Verification of Large-Scale Systems with Lookup Tables</a></li>
<li>Raman, Vasumathi and Donzé, Alexandre, el al. (2017) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20190410-120622960">Model Predictive Control for Signal Temporal Logic Specification</a>; <a href="https://doi.org/10.48550/arXiv.1703.09563">10.48550/arXiv.1703.09563</a></li>
<li>Swaminathan, Anandh and Hsiao, Victoria, el al. (2017) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20170705-101737121">Quantitative Modeling of Integrase Dynamics Using a Novel Python Toolbox for Parameter Inference in Synthetic Biology</a>; <a href="https://doi.org/10.1101/121152">10.1101/121152</a></li>
<li>Swaminathan, Anandh and Poole, William, el al. (2017) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20190325-142752006">Fast and flexible simulation and parameter estimation for synthetic biology using bioscrape</a>; <a href="https://doi.org/10.1101/121152">10.1101/121152</a></li>
<li>Parkin, James M. and Hsiao, Victoria, el al. (2017) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20170627-105933916">Engineering pulsatile communication in bacterial consortia</a>; <a href="https://doi.org/10.1101/111906">10.1101/111906</a></li>
<li>Shur, Andrey and Murray, Richard M. (2017) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20170627-105346578">Repressing Integrase attachment site operation with CRISPR-Cas9 in E. coli</a>; <a href="https://doi.org/10.1101/110254">10.1101/110254</a></li>
<li>Guo, Shaobin and Vaish, Amit, el al. (2017) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20170619-142716206">Expressing Biologically Active Membrane Proteins in a Cell-Free Transcription-Translation Platform</a>; <a href="https://doi.org/10.1101/104455">10.1101/104455</a></li>
<li>Filippidis, Ioannis and Murray, Richard M. (2016) <a href="https://resolver.caltech.edu/CaltechCDSTR:2016.004">Formalizing synthesis in TLA+</a></li>
<li>Dathathri, Sumanth and Livingston, Scott C., el al. (2016) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20200205-073243713">Identifying and exploiting tolerance to unexpected jumps in synthesized strategies for GR(1) specifications</a></li>
<li>Yeung, Enoch and Dy, Aaron J., el al. (2016) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20170313-102144883">The Effect of Compositional Context on Synthetic Gene Networks</a>; <a href="https://doi.org/10.1101/083329">10.1101/083329</a></li>
<li>Baetica, Ania A. and Catanach, Thomas A., el al. (2016) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20170206-084448312">A Bayesian approach to inferring chemical signal timing and amplitude in a temporal logic gate using the cell population distributional response</a>; <a href="https://doi.org/10.1101/087379">10.1101/087379</a></li>
<li>Filippidis, Ioannis and Murray, Richard M. (2016) <a href="https://resolver.caltech.edu/CaltechCDSTR:2016.003">Symbolic construction of GR(1) contracts for systems with full information</a>; <a href="https://doi.org/10.1109/ACC.2016.7525009">10.1109/ACC.2016.7525009</a></li>
<li>Swaminathan, Anandh and Gomez, Marcella M., el al. (2016) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20200205-074759124">Stochastic Gene Expression in Single Gene Oscillator Variants</a></li>
<li>Artavanis, Georgios and Hsiao, Victoria, el al. (2016) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20160706-081948550">The role of single occupancy effects on integrase dynamics in a cell-free system</a>; <a href="https://doi.org/10.1101/059675">10.1101/059675</a></li>
<li>Chiao, Abel C. and Murray, Richard M., el al. (2016) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20160502-104806241">Development of prokaryotic cell-free systems for synthetic biology</a>; <a href="https://doi.org/10.1101/048710">10.1101/048710</a></li>
<li>Hsiao, Victoria and Cheng, Aileen, el al. (2016) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20200205-075449007">Design and application of stationary phase combinatorial promoters</a></li>
<li>Dathathri, Sumanth and Livingston, Scott C., el al. (2016) <a href="https://resolver.caltech.edu/CaltechCDSTR:2016.001">Interfacing TuLiP with the JPL Statechart Autocoder: Initial progress toward synthesis of flight software from formal specifications</a></li>
<li>Han, Duo and Mo, Yilin, el al. (2015) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20200204-162407534">Synthesis of Distributed Longitudinal Control Protocols for a Platoon of Autonomous Vehicles</a></li>
<li>Yeung, Enoch and Kim, Jongmin, el al. (2015) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20200205-081111268">Global Dynamical Structure Reconstruction from Reconstructed Dynamical Structure Subnetworks: Applications to Biochemical Reaction Networks</a></li>
<li>Sen, Shaunak and Murray, Richard M. (2015) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20200205-074505122">Quantitative Performance Bounds in Biomolecular Circuits due to Temperature Uncertainty</a></li>
<li>Meng, Xianglin and Baetica, Ania A., el al. (2015) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20200205-080035495">Finding stationary solutions to the chemical master equation by gluing state spaces at one or two states recursively</a></li>
<li>Farahani, Samira S. and Raman, Vasumathi, el al. (2015) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20200214-151424905">Robust Model Predictive Control for Signal Temporal Logic Synthesis</a></li>
<li>Nguyen, Phuc H. B. and Wu, Yong Y., el al. (2015) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20181029-112222224">Design Space Exploration of the Violacein Pathway in Escherichia coli Based Transcription Translation Cell-Free System (TX-TL)</a>; <a href="https://doi.org/10.1101/027656">10.1101/027656</a></li>
<li>Sun, Zachary Z. and Kim, Jongmin, el al. (2015) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20150608-094354039">Protein degradation in a TX-TL cell-free expression system using ClpXP protease</a>; <a href="https://doi.org/10.1101/019695">10.1101/019695</a></li>
<li>Filippidis, Ioannis and Murray, Richard M. (2015) <a href="https://resolver.caltech.edu/CaltechCDSTR:2015.004">Revisiting the AMBA AHB bus case study</a></li>
<li>Wu, Yong Y. and Culler, Stephanie, el al. (2015) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20150428-075140716">Prototyping 1,4-butanediol (BDO) biosynthesis pathway in a cell-free transcription-translation (TX-TL) system</a>; <a href="https://doi.org/10.1101/017814">10.1101/017814</a></li>
<li>Filippidis, Ioannis and Murray, Richard M., el al. (2015) <a href="https://resolver.caltech.edu/CaltechCDSTR:2015.003">Synthesis from multi-paradigm specifications</a></li>
<li>Livingston, Scott C. and Wolff, Eric M., el al. (2015) <a href="https://resolver.caltech.edu/CaltechCDSTR:2015.002">Cross-entropy Temporal Logic Motion Planning</a>; <a href="https://doi.org/10.1145/2728606.2728635">10.1145/2728606.2728635</a></li>
<li>Guo, Shaobin and Hori, Yutaka, el al. (2015) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20200214-103858802">Systematic Design and Implementation of a Novel Synthetic Fold-Change Detector Biocircuit In Vivo</a></li>
<li>Raman, Vasumathi and Fält, Mattias, el al. (2015) <a href="https://resolver.caltech.edu/CaltechCDSTR:2015.001">Online Horizon Selection in Receding Horizon Temporal Logic Planning</a></li>
<li>Livingston, Scott C. and Murray, Richard M. (2014) <a href="https://resolver.caltech.edu/CaltechCDSTR:2014.001">Hot-swapping robot task goals in reactive formal synthesis</a></li>
<li>Sen, Shaunak and Murray, Richard M. (2014) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20160513-141535201">Negative Feedback Facilitates Temperature Robustness in Biomolecular Circuit Dynamics</a>; <a href="https://doi.org/10.1101/007385">10.1101/007385</a></li>
<li>Murray, Richard M. and Day, John C., el al. (2013) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20190213-141617926">Engineering Resilient Space Systems</a>; <a href="https://doi.org/10.26206/WDX7-K192">10.26206/WDX7-K192</a></li>
<li>Wolff, Eric M. and Murray, Richard M. (2013) <a href="https://resolver.caltech.edu/CaltechCDSTR:2013.001">Optimal Control of Mixed Logical Dynamical Systems with Long-Term Temporal Logic Specifications</a></li>
<li>Rogersten, Robert and Xu, Huan, el al. (2013) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20130115-094546873">An Aircraft Electric Power Testbed for Validating Automatically Synthesized Reactive Control Protocols</a></li>
<li>Wiltsche, Clemens and Topcu, Ufuk, el al. (2012) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20190410-120612586">Synthesis of Reactive Protocols for Vehicle-to-Vehicle Communication</a>; <a href="https://doi.org/10.48550/arXiv.1210.2035">10.48550/arXiv.1210.2035</a></li>
<li>Censi, Andrea and Nilsson, Adam, el al. (2012) <a href="https://resolver.caltech.edu/CaltechCDSTR:2012.004">Motion planning in observations space with learned diffeomorphism models</a></li>
<li>Livingston, Scott C. and Prabhakar, Pavithra, el al. (2012) <a href="https://resolver.caltech.edu/CaltechCDSTR:2012.003">Patching task-level robot controllers based on a local µ-calculus formula</a></li>
<li>Wolff, Eric M. and Topcu, Ufuk, el al. (2011) <a href="https://resolver.caltech.edu/CaltechCDSTR:2011.008">Robust Control of Uncertain Markov Decision Processes with Temporal Logic Specifications</a></li>
<li>Liu, Jun and Ozay, Necmiye, el al. (2011) <a href="https://resolver.caltech.edu/CaltechCDSTR:2011.006">Synthesis of Switching Protocols from Temporal Logic Specifications</a></li>
<li>Barmpoutis, Dionysios and Murray, Richard M. (2011) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20190410-120609095">Extremal Properties of Complex Networks</a>; <a href="https://doi.org/10.48550/arXiv.1104.5532">10.48550/arXiv.1104.5532</a></li>
<li>Censi, Andrea and Murray, Richard M. (2011) <a href="https://resolver.caltech.edu/CaltechCDSTR:2011.005">A group-theoretic approach to formalizing bootstrapping problems</a></li>
<li>Censi, Andrea and Murray, Richard M. (2011) <a href="https://resolver.caltech.edu/CaltechCDSTR:2011.004">Bootstrapping, uncertain semantics, and invariance</a></li>
<li>Barmpoutis, Dionysios and Murray, Richard M. (2010) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20190410-120605649">Quantification and Minimization of Crosstalk Sensitivity in Networks</a>; <a href="https://doi.org/10.48550/arXiv.1012.0606">10.48550/arXiv.1012.0606</a></li>
<li>Censi, Andrea and Murray, Richard M. (2010) <a href="https://resolver.caltech.edu/CaltechCDSTR:2010.003a">Bootstrapping bilinear models of robotic sensorimotor cascades</a></li>
<li>Lavaei, Javad and Sojoudi, Somayeh, el al. (2010) <a href="https://resolver.caltech.edu/CaltechCDSTR:2010.002">Delay-Based Controller Design for Continuous-Time and Hybrid Applications</a></li>
<li>Han, Shuo and Censi, Andrea, el al. (2010) <a href="https://resolver.caltech.edu/CaltechCDSTR:2010.001">A bio-plausible design for visual pose stabilization</a></li>
<li>Tonetti, Stefania and Murray, Richard M. (2009) <a href="https://resolver.caltech.edu/CaltechCDSTR:2009.001">Limits on the Network Sensitivity Function for Multi-Agent Systems on a Graph</a></li>
<li>Wongpiromsarn, Tichakorn and Mitra, Sayan, el al. (2008) <a href="https://resolver.caltech.edu/CaltechCDSTR:2008.003">Periodically Controlled Hybrid Systems: Verifying A Controller for An Autonomous Vehicle</a></li>
<li>Braman, J. M. B. and Murray, R. M. (2007) <a href="https://resolver.caltech.edu/CaltechCDSTR:2007.001">Conversion and verification procedure for goal-based control programs</a></li>
<li>Gupta, Vijay and Chung, Timothy H., el al. (2004) <a href="https://resolver.caltech.edu/CaltechCDSTR:2004.008">On a stochastic sensor selection algorithm with applications in sensor scheduling and sensor coverage</a></li>
<li>Gupta, Vijay and Hassibi, Babak, el al. (2004) <a href="https://resolver.caltech.edu/CaltechCDSTR:2004.006">A Sub-optimal Algorithm to Synthesize Control Laws for a Network of Dynamic Agents</a></li>
<li>Gupta, Vijay and Spanos, Demetri, el al. (2004) <a href="https://resolver.caltech.edu/CaltechCDSTR:2004.007">Optimal LQG Control Across a Packet-Dropping Link</a></li>
<li>Dunbar, William B. and Murray, Richard M. (2004) <a href="https://resolver.caltech.edu/CaltechCDSTR:2004.003">Distributed Receding Horizon Control with Application to Multi-Vehicle Formation Stabilization</a></li>
<li>Gupta, Vijay and Chung, Timothy H., el al. (2004) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20150211-071040084">Scheduling for Distributed Sensor Networks</a></li>
<li>Olfati-Saber, Reza and Murray, Richard M. (2003) <a href="https://resolver.caltech.edu/CaltechCDSTR:2003.005">Agreement Problems in Networks with Directed Graphs and Switching Topology</a></li>
<li>Fax, J. Alexander and Murray, Richard M. (2003) <a href="https://resolver.caltech.edu/CaltechCDSTR:2003.012">Information Flow and Cooperative Control of Vehicle Formations</a></li>
<li>Martin, Phillipe and Murray, Richard M., el al. (2003) <a href="https://resolver.caltech.edu/CaltechCDSTR:2003.008">Flat systems, equivalence and trajectory generation</a></li>
<li>Fax, J. Alexander and Murray, Richard M. (2001) <a href="https://resolver.caltech.edu/CaltechCDSTR:2001.01-007">Graph Laplacians and Stabilization of Vehicle Formations</a></li>
<li>Murray, Richard M. (1999) <a href="https://resolver.caltech.edu/CaltechCDSTR:1999.CIT-CDS-99-001">Geometric Approaches to Control in the Presence of Magnitude and Rate Saturations</a></li>
<li>Muruhan, Rathinam and Murray, Richard M. (1998) <a href="https://resolver.caltech.edu/CaltechCDSTR:1998.CIT-CDS-98-009">Discrete Function Approximation: Numerical Tools for Nonlinear Control</a></li>
<li>Yeung, S. and Wang, Y., el al. (1998) <a href="https://resolver.caltech.edu/CaltechCDSTR:1998.CIT-CDS-98-001">Evaluation of Bleed Valve Rate Requirements in Nonlinear Control of Rotating Stall on Axial Flow Compressors</a></li>
<li>Morin, Pascal and Murray, Richard M., el al. (1997) <a href="https://resolver.caltech.edu/CaltechCDSTR:1997.014">Nonlinear Rescaling of Control Laws with Application to Stabilization in the Presence of Magnitude Saturation</a></li>
<li>Bullo, Francesco and Murray, Richard M. (1997) <a href="https://resolver.caltech.edu/CaltechCDSTR:1997.CIT-CDS-97-003">Tracking for Fully Actuated Mechanical Systems: A Geometric Framework</a></li>
<li>Murray, Richard M. and Jacobsen, C.A., el al. (1997) <a href="https://resolver.caltech.edu/CaltechCDSTR:1997.CIT-CDS-97-012">System Identification for Limit Cycling Systems: A Case Study for Combustion Instabilities</a></li>
<li>van Nieuwstadt, Michiel J. and Murray, Richard M. (1997) <a href="https://resolver.caltech.edu/CaltechCDSTR:1997.CIT-CDS-96-017">Real Time Trajectory Generation for Differentially Flat Systems</a></li>
<li>Rathinam, Muruhan and Murray, Richard M. (1996) <a href="https://resolver.caltech.edu/CaltechCDSTR:1996.018">Configuration Flatness of Lagrangian Systems Underactuated by One Control</a></li>
<li>D'Andrea, Raffaello and Behnken, Robert L., el al. (1996) <a href="https://resolver.caltech.edu/CaltechCDSTR:1996.CIT-CDS-95-029">Active Control of an Axial Flow Compressor via Pulsed Air Injection</a></li>
<li>Lewis, Andrew D. and Murray, Richard M. (1996) <a href="https://resolver.caltech.edu/CaltechCDSTR:1996.CIT-CDS-96-007">Decomposition for Control Systems on Manifolds with an Affine Connection</a></li>
<li>Sur, Sudipto and Murray, Richard M. (1996) <a href="https://resolver.caltech.edu/CaltechCDSTR:1996.CIT-CDS-96-015">An Experimental Comparison of Tradeoffs in Using Compliant Manipulators for Robotic Grasping Tasks</a></li>
<li>Rathinam, Muruhan and Murray, Richard M. (1996) <a href="https://resolver.caltech.edu/CaltechCDSTR:1996.CIT-CDS-96-006">Configuration Flatness of Lagrangian Systems Underactuated by One Control</a></li>
<li>van Nieuwstadt, Michiel and Rathinam, Muruhan, el al. (1995) <a href="https://resolver.caltech.edu/CaltechCDSTR:1995.CIT-CDS-94-006">Differential Flatness and Absolute Equivalence</a></li>
<li>Bullo, Francesco and Murray, Richard M. (1995) <a href="https://resolver.caltech.edu/CaltechCDSTR:1995.CIT-CDS-95-010">Proportional Derivative (PD) Control on the Euclidean Group</a></li>
<li>Bloch, A. M. and Krishnaprasad, P. S., el al. (1995) <a href="https://resolver.caltech.edu/CaltechCDSTR:1995.CIT-CDS-94-013">Nonholonomic Mechanical Systems with Symmetry</a></li>
<li>Tierno, Jorge E. and Murray, Richard M., el al. (1995) <a href="https://resolver.caltech.edu/CaltechCDSTR:1995.CIT-CDS-95-032">Numerically Efficient Robustness Analysis of Trajectory Tracking for Nonlinear Systems</a></li>
<li>Sluis, Willem M. and Banaszuk, Andrzej, el al. (1995) <a href="https://resolver.caltech.edu/CaltechCDSTR:1995.CIT-CDS-95-025">A Homotopy Algorithm for Approximating Geometric Distributions by Integrable Systems</a></li>
<li>M'Closkey, Robert T. and Murray, Richard M. (1995) <a href="https://resolver.caltech.edu/CaltechCDSTR:1995.CIT-CDS-95-012">Exponential Stabilization of Driftless Nonlinear Control Systems using Homogeneous Feedback</a></li>
<li>Bullo, Francesco and Murray, Richard M., el al. (1995) <a href="https://resolver.caltech.edu/CaltechCDSTR:1995.CIT-CDS-95-005">Control on the Sphere and Reduced Attitude Stabilization</a></li>
<li>Lewis, Andrew D. and Murray, Richard M. (1995) <a href="https://resolver.caltech.edu/CaltechCDSTR:1995.CIT-CDS-95-015">Configuration Controllability of Simple Mechanical Control Systems</a></li>
<li>Kelly, Scott D. and Murray, Richard M. (1994) <a href="https://resolver.caltech.edu/CaltechCDSTR:1994.CIT-CDS-94-014">Geometric Phases and Robotic Locomotion</a></li>
<li>Lewis, Andrew D. and Murray, Richard M. (1994) <a href="https://resolver.caltech.edu/CaltechCDSTR:1994.CIT-CDS-94-016">Variational Principles for Constrained Systems: Theory and Experiment</a></li>
<li>Murray, Richard M. (1992) <a href="https://resolver.caltech.edu/CaltechCDSTR:1992.002">Nilpotent Bases for a Class of Non-Integrable Distributions with Applications to Trajectory Generation for Nonholonomic Systems</a></li>
</ul>