<h1>Mayo, Stephen</h1>
<h2>Combined from <a href="https://authors.library.caltech.edu">CaltechAUTHORS</a></h2>
<ul>
<li>Nichols, Aaron L. and Marotta, Christopher B., el al. (2024) <a href="https://authors.library.caltech.edu/records/4c1m4-76298">Hydrogel encapsulation of a designed fluorescent protein biosensor for continuous measurements of sub-100 nanomolar nicotine</a>; <a href="https://doi.org/10.1101/2024.12.02.625538">10.1101/2024.12.02.625538</a></li>
<li>Haloi, Nandan and Huang, Shan, el al. (2024) <a href="https://authors.library.caltech.edu/records/f08sq-jmm29">Interactive computational and experimental approaches improve the sensitivity of periplasmic binding protein-based nicotine biosensors for measurements in biofluids</a>; Protein Engineering, Design and Selection; Vol. 37; gzae003; PMCID PMC10896302; <a href="https://doi.org/10.1093/protein/gzae003">10.1093/protein/gzae003</a></li>
<li>Huang, Shan and Wang, Kaihang, el al. (2023) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20230328-708572000.64">Genome manipulation by guide-directed Argonaute cleavage</a>; Nucleic Acids Research; Vol. 51; No. 8; 4078-4085; PMCID PMC10164581; <a href="https://doi.org/10.1093/nar/gkad188">10.1093/nar/gkad188</a></li>
<li>Haloi, Nandan and Huang, Shan, el al. (2023) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20230316-182493000.35">Interactive computational and experimental approaches improve the sensitivity of periplasmic binding protein-based nicotine biosensors for measurements in biofluids</a>; <a href="https://doi.org/10.1101/2023.01.16.524298">10.1101/2023.01.16.524298</a></li>
<li>Huang, Shan and Wang, Kaihang, el al. (2021) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20211122-174116390">Genome manipulation by guide-directed Argonaute cleavage</a>; <a href="https://doi.org/10.1101/2021.11.17.469050">10.1101/2021.11.17.469050</a></li>
<li>Breunig, Stephanie and Chapman, Alex, el al. (2021) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20211117-181926510">Modification of Insulin Lispro by Incorporation of Non-canonical Proline Residues</a>; Protein Science; Vol. 30; No. S1; 89; <a href="https://doi.org/10.1002/pro.4191">10.1002/pro.4191</a></li>
<li>LaPelusa, Michael and Donoviel, Dorit, el al. (2021) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20210112-151232385">Microbiome for Mars: surveying microbiome connections to healthcare with implications for long-duration human spaceflight, virtual workshop, July 13, 2020</a>; Microbiome; Vol. 9; Art. No. 2; PMCID PMC7781430; <a href="https://doi.org/10.1186/s40168-020-00951-5">10.1186/s40168-020-00951-5</a></li>
<li>Nisthal, Alex and Wang, Connie Y., el al. (2019) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20181207-083716880">Protein stability engineering insights revealed by domain-wide comprehensive mutagenesis</a>; Proceedings of the National Academy of Sciences of the United States of America; Vol. 116; No. 33; 16367-16377; PMCID PMC6697890; <a href="https://doi.org/10.1073/pnas.1903888116">10.1073/pnas.1903888116</a></li>
<li>Oki, Kenji and Lee, Frederick S., el al. (2019) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20200102-092224643">Attempts to develop an enzyme converting DHIV to KIV</a>; Protein Engineering, Design and Selection; Vol. 32; No. 6; 261-270; <a href="https://doi.org/10.1093/protein/gzz042">10.1093/protein/gzz042</a></li>
<li>Ross, Matthew O. and MacMillan, Fraser, el al. (2019) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20190509-152916236">Particulate methane monooxygenase contains only mononuclear copper centers</a>; Science; Vol. 364; No. 6440; 566-570; PMCID PMC6664434; <a href="https://doi.org/10.1126/science.aav2572">10.1126/science.aav2572</a></li>
<li>Wannier, Timothy M. and Gillespie, Sarah K., el al. (2018) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20180105-112949227">Monomerization of Far-Red Fluorescent Proteins</a>; Proceedings of the National Academy of Sciences of the United States of America; Vol. 115; No. 48; E11294-E11301; PMCID PMC6275547; <a href="https://doi.org/10.1101/162842">10.1101/162842</a></li>
<li>Wang, Connie and Chang, Paul, el al. (2018) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20181206-080139767">Protabank: A Repository for Protein Design and Engineering Data</a>; Protein Science; Vol. 27; No. S1; 115; <a href="https://doi.org/10.1002/pro.3513">10.1002/pro.3513</a></li>
<li>Wang, Connie Y. and Chang, Paul M., el al. (2018) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20180402-082750705">ProtaBank: A repository for protein design and engineering data</a>; Protein Science; Vol. 27; No. 6; 1113-1124; PMCID PMC5980626; <a href="https://doi.org/10.1002/pro.3406">10.1002/pro.3406</a></li>
<li>Wang, Connie and Chang, Paul, el al. (2018) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20180523-151803691">PEBank: A Comprehensive Database for Protein Engineering and Design</a>; Biophysical Journal; Vol. 114; No. 3; 411A; <a href="https://doi.org/10.1016/j.bpj.2017.11.2279">10.1016/j.bpj.2017.11.2279</a></li>
<li>Cahn, Jackson K. B. and Werlang, Caroline A., el al. (2017) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20161012-112258970">A General Tool for Engineering the NAD/NADP Cofactor Preference of Oxidoreductases</a>; ACS Synthetic Biology; Vol. 6; No. 2; 326-333; PMCID PMC8611728; <a href="https://doi.org/10.1021/acssynbio.6b00188">10.1021/acssynbio.6b00188</a></li>
<li>de los Santos, Emmanuel L. C. and Meyerowitz, Joseph T., el al. (2016) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20150303-123633257">Engineering Transcriptional Regulator Effector Specificity using Computational Design and In Vitro Rapid Prototyping: Developing a Vanillin Sensor</a>; ACS Synthetic Biology; Vol. 5; No. 4; 287-295; <a href="https://doi.org/10.1021/acssynbio.5b00090">10.1021/acssynbio.5b00090</a></li>
<li>Li, Jian and Lawton, Thomas J., el al. (2016) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20150922-111505818">Cell-free protein synthesis enables high yielding synthesis of an active multicopper oxidase</a>; Biotechnology Journal; Vol. 11; No. 2; 212-218; <a href="https://doi.org/10.1002/biot.201500030">10.1002/biot.201500030</a></li>
<li>Mou, Yun and Yu, Jiun-Yann, el al. (2015) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20150528-195712684">Computational design of co-assembling protein–DNA nanowires</a>; Nature; Vol. 525; No. 7568; 230-233; <a href="https://doi.org/10.1038/nature14874">10.1038/nature14874</a></li>
<li>Mou, Yun and Huang, Po-Ssu, el al. (2015) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20150819-123344330">Computational design and experimental verification of a symmetric protein homodimer</a>; Proceedings of the National Academy of Sciences; Vol. 112; No. 34; 10714-10719; PMCID PMC4553821; <a href="https://doi.org/10.1073/pnas.1505072112">10.1073/pnas.1505072112</a></li>
<li>Mou, Yun and Huang, Po-Ssu, el al. (2015) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20150625-151326038">Using molecular dynamics simulations as an aid in the prediction of domain swapping of computationally designed protein variants</a>; Journal of Molecular Biology; Vol. 427; No. 16; 2697-2706; <a href="https://doi.org/10.1016/j.jmb.2015.06.006">10.1016/j.jmb.2015.06.006</a></li>
<li>Mayo, Stephen L. (2015) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20150916-131336698">Bridging the divide: A tale of the merger of computational chemistry and structural biology in enzyme design</a></li>
<li>Wannier, Timothy M. and Moore, Matthew M., el al. (2015) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20150623-115009160">Computational Design of the β-Sheet Surface of a Red Fluorescent Protein Allows Control of Protein Oligomerization</a>; PLoS ONE; Vol. 10; No. 6; Art. No. e0130582; PMCID PMC4468108; <a href="https://doi.org/10.1371/journal.pone.0130582">10.1371/journal.pone.0130582</a></li>
<li>Wannier, Timothy M. and Mayo, Stephen L. (2014) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20140610-104728713">The structure of a far-red fluorescent protein, AQ143, shows evidence in support of reported red-shifting chromophore interactions</a>; Protein Science; Vol. 23; No. 8; 1148-1153; PMCID PMC4116662; <a href="https://doi.org/10.1002/pro.2498">10.1002/pro.2498</a></li>
<li>Blomberg, Rebecca and Kries, Hajo, el al. (2013) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20131220-135748515">Precision is essential for efficient catalysis in an
evolved Kemp eliminase</a>; Nature; Vol. 503; No. 7476; 418-421; <a href="https://doi.org/10.1038/nature12623">10.1038/nature12623</a></li>
<li>Jaru-Ampornpan, Peera and Liang, Fu-Cheng, el al. (2013) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20130621-133910862">Mechanism of an ATP-independent Protein Disaggregase. II. Distinct Molecular Interactions Drive Multiple Steps During Aggregate Disassembly</a>; Journal of Biological Chemistry; Vol. 288; No. 19; 13431-13445; PMCID PMC3650381; <a href="https://doi.org/10.1074/jbc.M113.462861">10.1074/jbc.M113.462861</a></li>
<li>Chitsaz, Mohsen and Mayo, Stephen L. (2013) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20130321-144912093">GRID: A high-resolution protein structure refinement algorithm</a>; Journal of Computational Chemistry; Vol. 34; No. 6; 445-450; <a href="https://doi.org/10.1002/jcc.23151">10.1002/jcc.23151</a></li>
<li>Moore, Matthew M. and Oteng-Pabi, Samuel K., el al. (2012) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20130124-083857529">Recovery of Red Fluorescent Protein Chromophore Maturation Deficiency through Rational Design</a>; PLoS ONE; Vol. 7; No. 12; Art. No. e52463; PMCID PMC3527499; <a href="https://doi.org/10.1371/journal.pone.0052463">10.1371/journal.pone.0052463</a></li>
<li>Cahn, Jackson and Padilla Araujo, Bernardo Sosa, el al. (2012) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20120824-152117796">Multi-State Computational Design and Experimental Characterization of Triosephosphate Isomerase Flexible Hinges</a>; Protein Science; Vol. 21; No. S1; 132</li>
<li>Padilla Araujo, Bernardo Sosa and Miller, Thomas, el al. (2012) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20120824-152508878">In Silico Screening of Computational Enzyme Designs</a>; Protein Science; Vol. 21; No. S1; 132</li>
<li>Wannier, Timothy and Moore, Matthew, el al. (2012) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20120828-072233569">Engineering Monomerization of Red Fluorescent Proteins Through Computational Design</a>; Protein Science; Vol. 21; No. S1; 144-145</li>
<li>Lee, Toni and Farrow, Mary, el al. (2012) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20120824-161422230">Computational Thermostable Cellulase Engineering for Enhanced Biofuel Production</a>; Protein Science; Vol. 21; No. S1; 71-72</li>
<li>Berry, Alexandria and Privett, Heidi, el al. (2012) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20120824-154353922">Designing Conformational Control of Human Tissue Transglutaminase for Applications in Huntington's Disease Research</a>; Protein Science; Vol. 21; No. S1; 153</li>
<li>Chitsaz, Mohsen and Mayo, Stephen (2012) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20120824-155438591">Replica Exchange Monte Carlo GRID: A novel high-resolution refinement algorithm</a>; Protein Science; Vol. 21; No. S1; 139</li>
<li>Alvizo, Oscar and Mittal, Seema, el al. (2012) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20120712-085217104">Structural, kinetic, and thermodynamic studies of specificity designed HIV-1 protease</a>; Protein Science; Vol. 21; No. 7; 1029-1041; PMCID PMC3403440; <a href="https://doi.org/10.1002/pro.2086">10.1002/pro.2086</a></li>
<li>Chen, Mike M. Y. and Snow, Christopher D., el al. (2012) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20120420-110357141">Comparison of random mutagenesis and semi-rational designed libraries for improved cytochrome P450 BM3-catalyzed hydroxylation of small alkanes</a>; Protein Engineering, Design and Selection; Vol. 25; No. 4; 171-178; <a href="https://doi.org/10.1093/protein/gzs004">10.1093/protein/gzs004</a></li>
<li>Privett, Heidi K. and Kiss, Gert, el al. (2012) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20120326-153311623">Iterative approach to computational enzyme design</a>; Proceedings of the National Academy of Sciences of the United States of America; Vol. 109; No. 10; 3790-3795; PMCID PMC3309769; <a href="https://doi.org/10.1073/pnas.1118082108">10.1073/pnas.1118082108</a></li>
<li>Lee, Toni M. and Farrow, Mary F., el al. (2011) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20111111-135716977">A structural study of Hypocrea jecorina Cel5A</a>; Protein Science; Vol. 20; No. 11; 1935-1940; PMCID PMC3267957; <a href="https://doi.org/10.1002/pro.730">10.1002/pro.730</a></li>
<li>Keeffe, Jennifer R. and Gnanapragasam, Priyanthi N. P., el al. (2011) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20110913-132623950">Designed oligomers of cyanovirin-N show enhanced HIV neutralization</a>; Proceedings of the National Academy of Sciences of the United States of America; Vol. 108; No. 34; 14079-14084; PMCID PMC3161612; <a href="https://doi.org/10.1073/pnas.1108777108">10.1073/pnas.1108777108</a></li>
<li>Zhang, Xin and Lam, Vinh Q., el al. (2011) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20110511-090620791">Direct visualization reveals dynamics of a transient intermediate during protein assembly</a>; Proceedings of the National Academy of Sciences of the United States of America; Vol. 108; No. 16; 6450-6455; PMCID PMC3081034; <a href="https://doi.org/10.1073/pnas.1019051108">10.1073/pnas.1019051108</a></li>
<li>Hemmert, Andrew C. and Otto, Tamara C., el al. (2011) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20110404-094940641">Nerve Agent Hydrolysis Activity Designed into a Human Drug Metabolism Enzyme</a>; PLoS ONE; Vol. 6; No. 3; Art. No. e17441; PMCID PMC3060870; <a href="https://doi.org/10.1371/journal.pone.0017441">10.1371/journal.pone.0017441</a></li>
<li>Chica, Roberto A. and Moore, Matthew M., el al. (2010) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20101213-155449831">Generation of longer emission wavelength red fluorescent proteins using computationally designed libraries</a>; Proceedings of the National Academy of Sciences of the United States of America; Vol. 107; No. 47; 20257-20262; PMCID PMC2996648; <a href="https://doi.org/10.1073/pnas.1013910107">10.1073/pnas.1013910107</a></li>
<li>Allen, Benjamin D. and Nisthal, Alex, el al. (2010) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20101213-150517069">Experimental library screening demonstrates the successful application of computational protein design to large structural ensembles</a>; Proceedings of the National Academy of Sciences of the United States of America; Vol. 107; No. 46; 19838-19843; PMCID PMC2993350; <a href="https://doi.org/10.1073/pnas.1012985107">10.1073/pnas.1012985107</a></li>
<li>Allen, Benjamin D. and Mayo, Stephen L. (2010) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20100409-095211072">An efficient algorithm for multistate protein design based on FASTER</a>; Journal of Computational Chemistry; Vol. 31; No. 5; 904-916; <a href="https://doi.org/10.1002/jcc.21375">10.1002/jcc.21375</a></li>
<li>Crowhurst, Karin A. and Mayo, Stephen L. (2008) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20090515-095406688">NMR-detected conformational exchange observed in a computationally designed variant of protein Gβ1</a>; Protein Engineering, Design and Selection; Vol. 21; No. 9; 577-587; <a href="https://doi.org/10.1093/protein/gzn035">10.1093/protein/gzn035</a></li>
<li>Alvizo, Oscar and Mayo, Stephen L. (2008) <a href="https://resolver.caltech.edu/CaltechAUTHORS:ALVpnas08">Evaluating and optimizing computational protein design force fields using fixed composition-based negative design</a>; Proceedings of the National Academy of Sciences of the United States of America; Vol. 105; No. 34; 12242-12247; PMCID PMC2516967; <a href="https://doi.org/10.1073/pnas.0805858105">10.1073/pnas.0805858105</a></li>
<li>Vizcarra, Christina L. and Zhang, Naigong, el al. (2008) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20110617-165335622">An improved pairwise decomposable finite-difference Poisson-Boltzmann method for computational protein design</a>; Journal of Computational Chemistry; Vol. 29; No. 7; 1153-1162; <a href="https://doi.org/10.1002/jcc.20878">10.1002/jcc.20878</a></li>
<li>Huang, Po-Ssu and Love, John J., el al. (2007) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20110913-160000725">A de novo designed protein-protein interface</a>; Protein Science; Vol. 16; No. 12; 2770-2774; PMCID PMC2222823; <a href="https://doi.org/10.1110/ps.073125207">10.1110/ps.073125207</a></li>
<li>Shah, Premal S. and Hom, Geoffrey K, el al. (2007) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20110913-160001277">Full-sequence computational design and solution structure of a thermostable protein variant</a>; Journal of Molecular Biology; Vol. 372; No. 1; 1-6; <a href="https://doi.org/10.1016/j.jmb.2007.06.032">10.1016/j.jmb.2007.06.032</a></li>
<li>Plückthun, Andreas and Mayo, Stephen L. (2007) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20110913-160001099">The design of evolution and the evolution of design</a>; Current Opinion in Structural Biology; Vol. 17; No. 4; 451-453; <a href="https://doi.org/10.1016/j.sbi.2007.08.020">10.1016/j.sbi.2007.08.020</a></li>
<li>Lassila, Jonathan Kyle and Keeffe, Jennifer R., el al. (2007) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20110913-160001644">Exhaustive mutagenesis of six secondary active-site residues in Escherichia coli chorismate mutase shows the importance of hydrophobic side chains and a helix N-capping position for stability and catalysis</a>; Biochemistry; Vol. 46; No. 23; 6883-6891; <a href="https://doi.org/10.1021/bi700215x">10.1021/bi700215x</a></li>
<li>Choi, Eun Jung and Mao, Jessica, el al. (2007) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20110614-141918849">Computational design and biochemical characterization of maize nonspecific lipid transfer protein variants for biosensor applications</a>; Protein Science; Vol. 16; No. 4; 582-588; PMCID PMC2203350; <a href="https://doi.org/10.1110/ps.062607007">10.1110/ps.062607007</a></li>
<li>Zong, Chenghang and Wilson, Corey J., el al. (2007) <a href="https://resolver.caltech.edu/CaltechAUTHORS:ZONpnas07">Establishing the entatic state in folding metallated Pseudomonas aeruginosa azurin</a>; Proceedings of the National Academy of Sciences of the United States of America; Vol. 104; No. 9; 3159-3164; PMCID PMC1805512; <a href="https://doi.org/10.1073/pnas.0611149104">10.1073/pnas.0611149104</a></li>
<li>Treynor, Thomas P. and Vizcarra, Christina L., el al. (2007) <a href="https://resolver.caltech.edu/CaltechAUTHORS:TREpnas07">Computationally designed libraries of fluorescent proteins evaluated by preservation and diversity of function</a>; Proceedings of the National Academy of Sciences of the United States of America; Vol. 104; No. 1; 48-53; PMCID PMC1765474; <a href="https://doi.org/10.1073/pnas.0609647103">10.1073/pnas.0609647103</a></li>
<li>Alvizo, Oscar and Allen, Benjamin D., el al. (2007) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20110913-152351498">Computational protein design promises to revolutionize protein engineering</a>; BioTechniques; Vol. 42; No. 1; 31-39; <a href="https://doi.org/10.2144/000112336">10.2144/000112336</a></li>
<li>Mena, Marco A. and Treynor, Thomas P., el al. (2006) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20110620-160435158">Blue fluorescent proteins with enhanced brightness and photostability from a structurally targeted library</a>; Nature Biotechnology; Vol. 24; No. 12; 1569-1571; <a href="https://doi.org/10.1038/nbt1264">10.1038/nbt1264</a></li>
<li>Lassila, Jonathan Kyle and Privett, Heidi K., el al. (2006) <a href="https://resolver.caltech.edu/CaltechAUTHORS:LASpnas06">Combinatorial methods for small-molecule placement in computational enzyme design</a>; Proceedings of the National Academy of Sciences of the United States of America; Vol. 103; No. 45; 16710-16715; PMCID PMC1636520; <a href="https://doi.org/10.1073/pnas.0607691103">10.1073/pnas.0607691103</a></li>
<li>Shifman, Julia M. and Choi, Mee H., el al. (2006) <a href="https://resolver.caltech.edu/CaltechAUTHORS:SHIpnas06b">Ca2+/calmodulin-dependent protein kinase II (CaMKII) is activated by calmodulin with two bound calciums</a>; Proceedings of the National Academy of Sciences of the United States of America; Vol. 103; No. 38; 13968-13973; PMCID PMC1599897; <a href="https://doi.org/10.1073/pnas.0606433103">10.1073/pnas.0606433103</a></li>
<li>Zollars, Eric S. and Marshall, Shannon A., el al. (2006) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20110620-160436627">Simple electrostatic model improves designed protein sequences</a>; Protein Science; Vol. 15; No. 8; 2014-2018; PMCID PMC2242593; <a href="https://doi.org/10.1110/ps.062105506">10.1110/ps.062105506</a></li>
<li>Allen, Benjamin D. and Mayo, Stephen L. (2006) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20110913-165232651">Dramatic performance enhancements for the FASTER optimization algorithm</a>; Journal of Computational Chemistry; Vol. 27; No. 10; 1071-1075; <a href="https://doi.org/10.1002/jcc.20420">10.1002/jcc.20420</a></li>
<li>Choi, Eun Jung and Mayo, Stephen L (2006) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20110913-165232835">Generation and analysis of proline mutants in protein G</a>; Protein Engineering, Design and Selection; Vol. 19; No. 6; 285-289; <a href="https://doi.org/10.1093/protein/gzl007">10.1093/protein/gzl007</a></li>
<li>Hom, Geoffrey K. and Mayo, Stephen L. (2006) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20110913-173427297">A search algorithm for fixed-composition protein design</a>; Journal of Computational Chemistry; Vol. 27; No. 3; 375-378; <a href="https://doi.org/10.1002/jcc.20346">10.1002/jcc.20346</a></li>
<li>Vizcarra, Christina L. and Mayo, Stephen L. (2005) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20110620-160432503">Electrostatics in computational protein design</a>; Current Opinion in Chemical Biology; Vol. 9; No. 6; 622-626; <a href="https://doi.org/10.1016/j.cbpa.2005.10.014">10.1016/j.cbpa.2005.10.014</a></li>
<li>Huang, Po-Ssu and Love, John J., el al. (2005) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20111004-074354772">Adaptation of a fast Fourier transform-based docking algorithm for protein design</a>; Journal of Computational Chemistry; Vol. 26; No. 12; 1222-1232; <a href="https://doi.org/10.1002/jcc.20252">10.1002/jcc.20252</a></li>
<li>Oelschlaeger, Peter and Mayo, Stephen L. (2005) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20110620-160427419">Hydroxyl groups in the ββ sandwich of metallo-β-lactamases favor enzyme activity: a computational protein design study</a>; Journal of Molecular Biology; Vol. 350; No. 3; 395-401; <a href="https://doi.org/10.1016/j.jmb.2005.04.044">10.1016/j.jmb.2005.04.044</a></li>
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<li>Shah, Premal S. and Hom, Geoffrey K., el al. (2004) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20110913-173425840">Preprocessing of rotamers for protein design calculations</a>; Journal of Computational Chemistry; Vol. 25; No. 14; 1797-1800; <a href="https://doi.org/10.1002/jcc.20097">10.1002/jcc.20097</a></li>
<li>Shukla, Ushma J. and Marino, Heather, el al. (2004) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20110913-173424834">A designed protein interface that blocks fibril formation</a>; Journal of the American Chemical Society; Vol. 126; No. 43; 13914-13915; <a href="https://doi.org/10.1021/ja0456858">10.1021/ja0456858</a></li>
<li>Shifman, Julia M. and Mayo, Stephen L. (2003) <a href="https://resolver.caltech.edu/CaltechAUTHORS:SHIpnas03">Exploring the origins of binding specificity through the computational redesign of calmodulin</a>; Proceedings of the National Academy of Sciences of the United States of America; Vol. 100; No. 23; 13274-13279; PMCID PMC263780; <a href="https://doi.org/10.1073/pnas.2234277100">10.1073/pnas.2234277100</a></li>
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<li>Shifman, Julia M. and Mayo, Stephen L. (2002) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20110928-154513858">Modulating calmodulin binding specificity through computational protein design</a>; Journal of Molecular Biology; Vol. 323; No. 3; 417-423; <a href="https://doi.org/10.1016/S0022-2836(02)00881-1">10.1016/S0022-2836(02)00881-1</a></li>
<li>Datta, Deepshikha and Mayo, Stephen L. (2002) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20110620-160423337">A designed apoplastocyanin variant that shows reversible folding</a>; Biochemical and Biophysical Research Communications; Vol. 296; No. 4; 988-990; <a href="https://doi.org/10.1016/S0006-291X(02)02037-5">10.1016/S0006-291X(02)02037-5</a></li>
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<li>Voigt, Christopher A. and Martinez, Carlos, el al. (2002) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20110927-143229047">Protein building blocks preserved by recombination</a>; Nature Structural Biology; Vol. 9; No. 7; 553-558; <a href="https://doi.org/10.1038/nsb805">10.1038/nsb805</a></li>
<li>Datta, Deepshikha and Wang, Pin, el al. (2002) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20110620-160431532">A designed phenylalanyl-tRNA synthetase variant allows efficient in vivo incorporation of aryl ketone functionality into proteins</a>; Journal of the American Chemical Society; Vol. 124; No. 20; 5652-5653; <a href="https://doi.org/10.1021/ja0177096">10.1021/ja0177096</a></li>
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<li>Bolon, Daniel N. and Mayo, Stephen L. (2001) <a href="https://resolver.caltech.edu/CaltechAUTHORS:BOLpnas01">Enzyme-like proteins by computational design</a>; Proceedings of the National Academy of Sciences of the United States of America; Vol. 98; No. 25; 14274-14279; PMCID PMC64672; <a href="https://doi.org/10.1073/pnas.251555398">10.1073/pnas.251555398</a></li>
<li>Bolon, Daniel N. and Mayo, Stephen L. (2001) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20110928-133003644">Polar residues in the protein core of Escherichia coli thioredoxin are important for fold specificity</a>; Biochemistry; Vol. 40; No. 34; 10047-10053; <a href="https://doi.org/10.1021/bi010427y">10.1021/bi010427y</a></li>
<li>Sarisky, Catherine A. and Mayo, Stephen L. (2001) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20111003-155045528">The ββα fold: explorations in sequence space</a>; Journal of Molecular Biology; Vol. 307; No. 5; 1411-1418; <a href="https://doi.org/10.1006/jmbi.2000.4345">10.1006/jmbi.2000.4345</a></li>
<li>Voigt, Christopher A. and Mayo, Stephen L., el al. (2001) <a href="https://resolver.caltech.edu/CaltechAUTHORS:VOIpnas01">Computational method to reduce the search space for directed protein evolution</a>; Proceedings of the National Academy of Sciences of the United States of America; Vol. 98; No. 7; 3778-3783; PMCID PMC31129; <a href="https://doi.org/10.1073/pnas.051614498">10.1073/pnas.051614498</a></li>
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<li>Marshall, Shannon A. and Mayo, Stephen L. (2001) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20110620-160433490">Achieving stability and conformational specificity in designed proteins via binary patterning</a>; Journal of Molecular Biology; Vol. 305; No. 3; 619-631; <a href="https://doi.org/10.1006/jmbi.2000.4319">10.1006/jmbi.2000.4319</a></li>
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<li>Shimaoka, Motomu and Shifman, Julia M., el al. (2000) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20110620-160434458">Computational design of an integrin I domain stabilized in the open high affinity conformation</a>; Nature Structural Biology; Vol. 7; No. 8; 674-678; <a href="https://doi.org/10.1038/77978">10.1038/77978</a></li>
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<li>Strop, Pavel and Mayo, Stephen L. (1999) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20110620-160421544">Rubredoxin Variant Folds without Iron</a>; Journal of the American Chemical Society; Vol. 121; No. 11; 2341-2345; <a href="https://doi.org/10.1021/ja9834780">10.1021/ja9834780</a></li>
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<li>Malakauskas, Sandra M. and Mayo, Stephen L. (1998) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20110620-160422818">Design, structure and stability of a hyperthermophilic protein variant</a>; Nature Structural Biology; Vol. 5; No. 6; 470-475; <a href="https://doi.org/10.1038/nsb0698-470">10.1038/nsb0698-470</a></li>
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