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    title = "Ca2+/calmodulin-dependent protein kinase II (CaMKII) is activated by calmodulin with two bound calciums",
    journal = "Proceedings of the National Academy of Sciences of the United States of America",
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    doi = "10.1073/pnas.0606433103",
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@article{https://resolver.caltech.edu/CaltechAUTHORS:20110620-160436627,
    title = "Simple electrostatic model improves designed protein sequences",
    journal = "Protein Science",
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    id = "record",
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    doi = "10.1110/ps.062105506",
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@article{https://resolver.caltech.edu/CaltechAUTHORS:20110913-165232651,
    title = "Dramatic performance enhancements for the FASTER optimization algorithm",
    journal = "Journal of Computational Chemistry",
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    id = "record",
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    doi = "10.1002/jcc.20420",
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    title = "Generation and analysis of proline mutants in protein G",
    journal = "Protein Engineering, Design and Selection",
    year = "2006",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20110913-165232835",
    id = "record",
    issn = "1741-0126",
    doi = "10.1093/protein/gzl007",
    volume = "19"
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@article{https://resolver.caltech.edu/CaltechAUTHORS:20110913-173427297,
    title = "A search algorithm for fixed-composition protein design",
    journal = "Journal of Computational Chemistry",
    year = "2006",
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    doi = "10.1002/jcc.20346",
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    title = "Electrostatics in computational protein design",
    journal = "Current Opinion in Chemical Biology",
    year = "2005",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20110620-160432503",
    id = "record",
    issn = "1367-5931",
    doi = "10.1016/j.cbpa.2005.10.014",
    volume = "9"
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    title = "Adaptation of a fast Fourier transform-based docking algorithm for protein design",
    journal = "Journal of Computational Chemistry",
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    url = "https://resolver.caltech.edu/CaltechAUTHORS:20111004-074354772",
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    doi = "10.1002/jcc.20252",
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@article{https://resolver.caltech.edu/CaltechAUTHORS:20110620-160427419,
    title = "Hydroxyl groups in the ββ sandwich of metallo-β-lactamases favor enzyme activity: a computational protein design study",
    journal = "Journal of Molecular Biology",
    year = "2005",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20110620-160427419",
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    doi = "10.1016/j.jmb.2005.04.044",
    volume = "350"
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@article{https://resolver.caltech.edu/CaltechAUTHORS:20110620-160427069,
    title = "One- and two-body decomposable Poisson-Boltzmann methods for protein design calculations",
    journal = "Protein Science",
    year = "2005",
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    id = "record",
    issn = "0961-8368",
    doi = "10.1110/ps.041259105",
    volume = "14",
    pmcid = "PMC2253281"
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    title = "Computationally designed variants of Escherichia coli chorismate mutase show altered catalytic activity",
    journal = "Protein Engineering, Design and Selection",
    year = "2005",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:LASpeds05",
    id = "record",
    issn = "1741-0126",
    doi = "10.1093/protein/gzi015",
    volume = "18"
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@article{https://resolver.caltech.edu/CaltechAUTHORS:20110620-160432981,
    title = "Dioxane contributes to the altered conformation and oligomerization state of a designed engrailed homeodomain variant",
    journal = "Protein Science",
    year = "2005",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20110620-160432981",
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    issn = "0961-8368",
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@article{https://resolver.caltech.edu/CaltechAUTHORS:20110913-173427641,
    title = "Impact of remote mutations on metallo-β-lactamase substrate specificity: implications for the evolution of antibiotic resistance",
    journal = "Protein Science",
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    issn = "0961-8368",
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@article{https://resolver.caltech.edu/CaltechAUTHORS:20110913-173425840,
    title = "Preprocessing of rotamers for protein design calculations",
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@article{https://resolver.caltech.edu/CaltechAUTHORS:20110913-173424834,
    title = "A designed protein interface that blocks fibril formation",
    journal = "Journal of the American Chemical Society",
    year = "2004",
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    id = "record",
    issn = "0002-7863",
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@article{https://resolver.caltech.edu/CaltechAUTHORS:SHIpnas03,
    title = "Exploring the origins of binding specificity through the computational redesign of calmodulin",
    journal = "Proceedings of the National Academy of Sciences of the United States of America",
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    url = "https://resolver.caltech.edu/CaltechAUTHORS:SHIpnas03",
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    doi = "10.1073/pnas.2234277100",
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    pmcid = "PMC263780"
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@article{https://resolver.caltech.edu/CaltechAUTHORS:20110913-173426073,
    title = "Repacking the Core of T4 lysozyme by automated design",
    journal = "Journal of Molecular Biology",
    year = "2003",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20110913-173426073",
    id = "record",
    issn = "0022-2836",
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    volume = "332"
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@article{https://resolver.caltech.edu/CaltechAUTHORS:20110913-173425194,
    title = "Designing proteins for therapeutic applications",
    journal = "Current Opinion in Structural Biology",
    year = "2003",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20110913-173425194",
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@article{https://resolver.caltech.edu/CaltechAUTHORS:20110913-173426256,
    title = "Library analysis of SCHEMA-guided protein recombination",
    journal = "Protein Science",
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    issn = "0961-8368",
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@article{https://resolver.caltech.edu/CaltechAUTHORS:20110913-173426521,
    title = "NMR and temperature-jump measurements of de novo designed proteins demonstrate rapid folding in the absence of explicit selection for kinetics",
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@article{https://resolver.caltech.edu/CaltechAUTHORS:20110620-160434663,
    title = "Prudent modeling of core polar residues in computational protein design",
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@article{https://resolver.caltech.edu/CaltechAUTHORS:20110913-173425474,
    title = "Exact rotamer optimization for protein design",
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@article{https://resolver.caltech.edu/CaltechAUTHORS:20110913-173426926,
    title = "De novo backbone and sequence design of an idealized α/β-barrel protein: evidence of stable tertiary structure",
    journal = "Journal of Molecular Biology",
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@article{https://resolver.caltech.edu/CaltechAUTHORS:20110928-154513858,
    title = "Modulating calmodulin binding specificity through computational protein design",
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@article{https://resolver.caltech.edu/CaltechAUTHORS:20110620-160423337,
    title = "A designed apoplastocyanin variant that shows reversible folding",
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@article{https://resolver.caltech.edu/CaltechAUTHORS:20110620-160422247,
    title = "Engineering and design computational protein design - Editorial overview",
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    doi = "10.1038/nsb805",
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@article{https://resolver.caltech.edu/CaltechAUTHORS:20110620-160431532,
    title = "A designed phenylalanyl-tRNA synthetase variant allows efficient in vivo incorporation of aryl ketone functionality into proteins",
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    title = "De novo design of biocatalysts",
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    title = "Evaluation of the energetic contribution of an ionic network to beta-sheet stability",
    journal = "Protein Science",
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    title = "Electrostatics significantly affect the stability of designed homeodomain variants",
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    title = "Enzyme-like proteins by computational design",
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    title = "Polar residues in the protein core of Escherichia coli thioredoxin are important for fold specificity",
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