@other{https://thesis.library.caltech.edu/id/eprint/14996,
    authors = "Huang, Shan",
    title = "DNA-Guided Genome Manipulation in Escherichia coli",
    year = "2023",
    url = "https://resolver.caltech.edu/CaltechTHESIS:08072022-205043055",
    id = "https://thesis.library.caltech.edu/id/eprint/14996",
    doi = "10.7907/3yab-jg50"
}


@other{https://thesis.library.caltech.edu/id/eprint/14357,
    authors = "Aceves, Aiden Joseph",
    title = "Machine Learning and Modeling Methods for Protein Engineering",
    year = "2022",
    url = "https://resolver.caltech.edu/CaltechTHESIS:09092021-024951318",
    id = "https://thesis.library.caltech.edu/id/eprint/14357",
    doi = "10.7907/5j34-0d55"
}


@other{https://thesis.library.caltech.edu/id/eprint/14189,
    authors = "Wang, Jingzhou",
    title = "CDRxAb: Antibody Small-Molecule Conjugates with Computationally Designed Target-Binding Synergy",
    year = "2021",
    url = "https://resolver.caltech.edu/CaltechTHESIS:05282021-080632319",
    id = "https://thesis.library.caltech.edu/id/eprint/14189",
    doi = "10.7907/p0kj-9d56"
}


@other{https://thesis.library.caltech.edu/id/eprint/10166,
    authors = "Lieblich, Seth Aharon",
    title = "Non-Canonical Amino Acid Mutagenesis of Position B28 In Insulin with Proline Analogs",
    year = "2017",
    url = "https://resolver.caltech.edu/CaltechTHESIS:05112017-233327193",
    id = "https://thesis.library.caltech.edu/id/eprint/10166",
    doi = "10.7907/Z90Z71BD"
}


@other{https://thesis.library.caltech.edu/id/eprint/9538,
    authors = "Cahn, Jackson Kenai Blender",
    title = "Engineering, Predicting, and Understanding Nicotinamide Cofactor Specificity",
    year = "2016",
    url = "https://resolver.caltech.edu/CaltechTHESIS:01212016-225223309",
    id = "https://thesis.library.caltech.edu/id/eprint/9538",
    doi = "10.7907/Z9QV3JJ8"
}


@other{https://thesis.library.caltech.edu/id/eprint/8761,
    authors = "Wannier, Timothy Milton",
    title = "Computationally Guided Monomerization of Red Fluorescent Proteins of the Class Anthozoa",
    year = "2015",
    url = "https://resolver.caltech.edu/CaltechTHESIS:01272015-110638252",
    id = "https://thesis.library.caltech.edu/id/eprint/8761",
    doi = "10.7907/Z9571908"
}


@other{https://thesis.library.caltech.edu/id/eprint/8865,
    authors = "Cornejo de los Santos, Emmanuel Lorenzo",
    title = "Expanding the Toolkit for Synthetic Biology: Frameworks for Native-like Non-natural Gene Circuits",
    year = "2015",
    url = "https://resolver.caltech.edu/CaltechTHESIS:05182015-163708506",
    id = "https://thesis.library.caltech.edu/id/eprint/8865",
    doi = "10.7907/Z9M61H64"
}


@other{https://thesis.library.caltech.edu/id/eprint/8101,
    authors = "Berry, Alexandria Helen T.",
    title = "Designing Conformational Control of Human Tissue Transglutaminase",
    year = "2014",
    url = "https://resolver.caltech.edu/CaltechTHESIS:02282014-131036761",
    id = "https://thesis.library.caltech.edu/id/eprint/8101",
    doi = "10.7907/WW1E-VT19"
}


@other{https://thesis.library.caltech.edu/id/eprint/8501,
    authors = "Hamdouche, Samy",
    title = "Engineered Antibody and Monobody Domains with T Cell Receptor-Like Selectivity for Tumor Associated Peptide-MHC Antigens",
    year = "2014",
    url = "https://resolver.caltech.edu/CaltechTHESIS:06062014-175608943",
    id = "https://thesis.library.caltech.edu/id/eprint/8501",
    doi = "10.7907/Z9WH2N02"
}


@other{https://thesis.library.caltech.edu/id/eprint/8217,
    authors = "Sosa Padilla Araujo, Bernardo",
    title = "Computational Enzyme Design",
    year = "2014",
    url = "https://resolver.caltech.edu/CaltechTHESIS:05052014-122744794",
    id = "https://thesis.library.caltech.edu/id/eprint/8217",
    doi = "10.7907/Z9KP805N"
}


@other{https://thesis.library.caltech.edu/id/eprint/8027,
    authors = "Lee, Toni Marie",
    title = "Computationally-Guided Thermostabilization of the Primary Endoglucanase from Hypocrea jerorina for Cellulosic Biofuel Production",
    year = "2014",
    url = "https://resolver.caltech.edu/CaltechTHESIS:11172013-001549340",
    id = "https://thesis.library.caltech.edu/id/eprint/8027",
    doi = "10.7907/Z9S180G0"
}


@other{https://thesis.library.caltech.edu/id/eprint/8392,
    authors = "Mou, Yun",
    title = "Computational Design of Self-Assembling Proteins and Protein-DNA Nanowires",
    year = "2014",
    url = "https://resolver.caltech.edu/CaltechTHESIS:05232014-201621983",
    id = "https://thesis.library.caltech.edu/id/eprint/8392",
    doi = "10.7907/Z9PG1PPV"
}


@other{https://thesis.library.caltech.edu/id/eprint/8449,
    authors = "Kym, Eugene Yongshik (Gene)",
    title = "Engineered Discoidin Domain from Factor VIII Binds αvβ3 Integrin with Antibody-like Affinity
 ",
    year = "2014",
    url = "https://resolver.caltech.edu/CaltechTHESIS:05302014-171245991",
    id = "https://thesis.library.caltech.edu/id/eprint/8449",
    doi = "10.7907/PTZH-PB29"
}


@other{https://thesis.library.caltech.edu/id/eprint/8502,
    authors = "Chitsaz, Mohsen",
    title = "Protein Structure Refinement Algorithms",
    year = "2014",
    url = "https://resolver.caltech.edu/CaltechTHESIS:06072014-074257676",
    id = "https://thesis.library.caltech.edu/id/eprint/8502",
    doi = "10.7907/7731-QM74"
}


@other{https://thesis.library.caltech.edu/id/eprint/7204,
    authors = "Moore, Matthew Michaels",
    title = "Applications of Computational Protein Design to Red Fluorescent Proteins",
    year = "2013",
    url = "https://resolver.caltech.edu/CaltechTHESIS:09132012-234333515",
    id = "https://thesis.library.caltech.edu/id/eprint/7204",
    doi = "10.7907/6876-A570"
}


@other{https://thesis.library.caltech.edu/id/eprint/6812,
    authors = "Nisthal, Alex",
    title = "Accelerating the Interplay Between Theory and Experiment in Protein Design",
    year = "2012",
    url = "https://resolver.caltech.edu/CaltechTHESIS:02062012-154120957",
    id = "https://thesis.library.caltech.edu/id/eprint/6812",
    doi = "10.7907/Z9833Q2F"
}


@other{https://thesis.library.caltech.edu/id/eprint/1570,
    authors = "Allen, Benjamin Daniel",
    title = "Development and Validation of Optimization Methods for the Design of Protein Sequences and Combinatorial Libraries",
    year = "2009",
    url = "https://resolver.caltech.edu/CaltechETD:etd-05012009-112749",
    id = "https://thesis.library.caltech.edu/id/eprint/1570",
    doi = "10.7907/SNJJ-0Q88"
}


@other{https://thesis.library.caltech.edu/id/eprint/2175,
    authors = "Privett, Heidi Kathleen",
    title = "An Iterative Approach to de novo Computational Enzyme Design and the Successful Application to the Kemp Elimination",
    year = "2009",
    url = "https://resolver.caltech.edu/CaltechETD:etd-05272009-091024",
    id = "https://thesis.library.caltech.edu/id/eprint/2175",
    doi = "10.7907/1402-XZ32"
}


@other{https://thesis.library.caltech.edu/id/eprint/5131,
    authors = "Keeffe, Jennifer Rae",
    title = "Engineering Cyanovirin-N for Enhanced Viral Neutralization",
    year = "2009",
    url = "https://resolver.caltech.edu/CaltechETD:etd-12232008-110031",
    id = "https://thesis.library.caltech.edu/id/eprint/5131",
    doi = "10.7907/QSJH-5X56"
}


@other{https://thesis.library.caltech.edu/id/eprint/2259,
    authors = "Vizcarra, Christina Luisa",
    title = "Development and Evaluation of Protein Design Methods for Functional Targets",
    year = "2008",
    url = "https://resolver.caltech.edu/CaltechETD:etd-05292008-140215",
    id = "https://thesis.library.caltech.edu/id/eprint/2259",
    doi = "10.7907/G16E-JZ97"
}


@other{https://thesis.library.caltech.edu/id/eprint/5192,
    authors = "Alvizo, Oscar",
    title = "Computational Protein Design Force Field Optimization: A Negative Design Approach",
    year = "2007",
    url = "https://resolver.caltech.edu/CaltechETD:etd-05212007-164114",
    id = "https://thesis.library.caltech.edu/id/eprint/5192",
    doi = "10.7907/NYVY-7Z76"
}


@other{https://thesis.library.caltech.edu/id/eprint/5046,
    authors = "Lassila, Jonathan Kyle",
    title = "Methods for Computational Enzyme Design and Application to the Chorismate-Prephenate Rearrangement",
    year = "2007",
    url = "https://resolver.caltech.edu/CaltechETD:etd-12182006-150535",
    id = "https://thesis.library.caltech.edu/id/eprint/5046",
    doi = "10.7907/4xm1-h147"
}


@other{https://thesis.library.caltech.edu/id/eprint/2362,
    authors = "Choi, Eun Jung",
    title = "Development and Applications of Computational Protein Design",
    year = "2006",
    url = "https://resolver.caltech.edu/CaltechETD:etd-06012006-103350",
    id = "https://thesis.library.caltech.edu/id/eprint/2362",
    doi = "10.7907/ZNED-BV38"
}


@other{https://thesis.library.caltech.edu/id/eprint/2464,
    authors = "Zollars, Eric Stafford",
    title = "Force Field Development in Protein Design",
    year = "2006",
    url = "https://resolver.caltech.edu/CaltechETD:etd-06052006-155305",
    id = "https://thesis.library.caltech.edu/id/eprint/2464",
    doi = "10.7907/55br-9a21"
}


@other{https://thesis.library.caltech.edu/id/eprint/595,
    authors = "Mao, Jessica",
    title = "Applications of Computational Protein Design",
    year = "2006",
    url = "https://resolver.caltech.edu/CaltechETD:etd-02102006-100744",
    id = "https://thesis.library.caltech.edu/id/eprint/595",
    doi = "10.7907/13A4-Z652"
}


@other{https://thesis.library.caltech.edu/id/eprint/2148,
    authors = "Sarisky, Catherine Ann",
    title = "Exploration of the Determinants of Protein Structure and Stability by Protein Design",
    year = "2005",
    url = "https://resolver.caltech.edu/CaltechETD:etd-05272005-121337",
    id = "https://thesis.library.caltech.edu/id/eprint/2148",
    doi = "10.7907/RBSA-R089"
}


@other{https://thesis.library.caltech.edu/id/eprint/1266,
    authors = "Shah, Premal S.",
    title = "Advances in Force Field Development and Sequence Optimization Methods for Computational Protein Design",
    year = "2005",
    url = "https://resolver.caltech.edu/CaltechETD:etd-04042005-142719",
    id = "https://thesis.library.caltech.edu/id/eprint/1266",
    doi = "10.7907/mg9x-s593"
}


@other{https://thesis.library.caltech.edu/id/eprint/2303,
    authors = "Hom, Geoffrey Kai Tong",
    title = "Advances in Computational Protein Design: Development of More Efficient Search Algorithms and their Application to the Full-Sequence Design of Larger Proteins",
    year = "2005",
    url = "https://resolver.caltech.edu/CaltechETD:etd-05302005-223153",
    id = "https://thesis.library.caltech.edu/id/eprint/2303",
    doi = "10.7907/M4R9-YM51"
}


@other{https://thesis.library.caltech.edu/id/eprint/2354,
    authors = "Huang, Po-Ssu",
    title = "Computational Design and Experimental Characterization of Protein Oligomers",
    year = "2004",
    url = "https://resolver.caltech.edu/CaltechETD:etd-06012004-214823",
    id = "https://thesis.library.caltech.edu/id/eprint/2354",
    doi = "10.7907/3DZW-2R54"
}


@other{https://thesis.library.caltech.edu/id/eprint/3169,
    authors = "Voigt, Christopher Ashby",
    title = "Computationally Optimizing the Directed Evolution of Proteins",
    year = "2003",
    url = "https://resolver.caltech.edu/CaltechETD:etd-08192002-161141",
    id = "https://thesis.library.caltech.edu/id/eprint/3169",
    doi = "10.7907/E4GF-EQ41"
}


@other{https://thesis.library.caltech.edu/id/eprint/1086,
    authors = "Datta, Deepshikha",
    title = "Protein-Ligand Interactions: Docking, Design and Conformation Change",
    year = "2003",
    url = "https://resolver.caltech.edu/CaltechETD:etd-03242003-111426",
    id = "https://thesis.library.caltech.edu/id/eprint/1086",
    doi = "10.7907/36FS-2262"
}


@other{https://thesis.library.caltech.edu/id/eprint/6993,
    authors = "Marshall, Shannon Alicia",
    title = "Stability and Conformational Specificity in Protein Design: Models for Binary Patterning and Electrostatics",
    year = "2002",
    url = "https://resolver.caltech.edu/CaltechTHESIS:04302012-143643233",
    id = "https://thesis.library.caltech.edu/id/eprint/6993",
    doi = "10.7907/4BVY-VN75"
}


@other{https://thesis.library.caltech.edu/id/eprint/330,
    authors = "Bolon, Daniel N.",
    title = "Computational Enzyme Design",
    year = "2002",
    url = "https://resolver.caltech.edu/CaltechETD:etd-01252002-100801",
    id = "https://thesis.library.caltech.edu/id/eprint/330",
    doi = "10.7907/W7F3-DS14"
}


@other{https://thesis.library.caltech.edu/id/eprint/1686,
    authors = "Strop, Pavel",
    title = "Characterization of the Mechanosensitive Channel of Large Conductance",
    year = "2002",
    url = "https://resolver.caltech.edu/CaltechETD:etd-05092002-155216",
    id = "https://thesis.library.caltech.edu/id/eprint/1686",
    doi = "10.7907/nkqb-gd95"
}


@other{https://thesis.library.caltech.edu/id/eprint/11451,
    authors = "Morgan, Chantal Smith",
    title = "Full Sequence Design of an Alpha-Helical Protein and Investigation of the Importance of Helix Dipole and Capping Effects in Helical Protein Design",
    year = "2000",
    url = "https://resolver.caltech.edu/CaltechTHESIS:04092019-114920250",
    id = "https://thesis.library.caltech.edu/id/eprint/11451",
    doi = "10.7907/8wn3-cv27"
}


@other{https://thesis.library.caltech.edu/id/eprint/1785,
    authors = "Dahiyat, Bassil I.",
    title = "Protein design automation : principles and practice",
    year = "1998",
    url = "https://resolver.caltech.edu/CaltechETD:etd-05132009-113001",
    id = "https://thesis.library.caltech.edu/id/eprint/1785",
    doi = "10.7907/08j5-w532"
}


@other{https://thesis.library.caltech.edu/id/eprint/6397,
    authors = "Su, Alyce",
    title = "Backbone flexibility in protein design theory and experiment",
    year = "1998",
    url = "https://resolver.caltech.edu/CaltechTHESIS:05162011-132252955",
    id = "https://thesis.library.caltech.edu/id/eprint/6397",
    doi = "10.7907/MY6J-1191"
}