<h1>Hucka, Michael</h1>
<h2>Combined from <a href="https://authors.library.caltech.edu">CaltechAUTHORS</a></h2>
<ul>
<li>König, Matthias and Gleeson, Padraig, el al. (2023) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20230420-698969800.9">Specifications of standards in systems and synthetic biology: status and developments in 2022 and the COMBINE meeting 2022</a>; Journal of Integrative Bioinformatics; Vol. 20; No. 1; Art. No. 20230004; PMCID PMC10063176; <a href="https://doi.org/10.1515/jib-2023-0004">10.1515/jib-2023-0004</a></li>
<li>Garijo, Daniel and Ménager, Hervé, el al. (2022) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20220916-666084000">Nine best practices for research software registries and repositories</a>; PeerJ Computer Science; Vol. 8; Art. No. e1023; <a href="https://doi.org/10.7717/peerj-cs.1023">10.7717/peerj-cs.1023</a></li>
<li>Schreiber, Falk and Gleeson, Padraig, el al. (2021) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20211209-231186000">Specifications of standards in systems and synthetic biology: status and developments in 2021</a>; Journal of Integrative Bioinformatics; Vol. 18; No. 3; Art. No. 20210026; PMCID PMC8573232; <a href="https://doi.org/10.1515/jib-2021-0026">10.1515/jib-2021-0026</a></li>
<li>Keating, Sarah M. and Waltemath, Dagmar, el al. (2020) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20200827-073238775">SBML Level 3: an extensible format for the exchange and reuse of biological models</a>; Molecular Systems Biology; Vol. 16; No. 8; Art. No. e9110; <a href="https://doi.org/10.15252/msb.20199110">10.15252/msb.20199110</a></li>
<li>Waltemath, Dagmar and Golebiewski, Martin, el al. (2020) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20200708-073700691">The first 10 years of the international coordination network for standards in systems and synthetic biology (COMBINE)</a>; Journal of Integrative Bioinformatics; Vol. 17; No. 2-3; Art. No. 20200005; <a href="https://doi.org/10.1515/jib-2020-0005">10.1515/jib-2020-0005</a></li>
<li>Zhang, Fengkai and Smith, Lucian P., el al. (2020) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20200713-124645293">Systems biology markup language (SBML) level 3 package: multistate, multicomponent and multicompartment species, version 1, release 2</a>; Journal of Integrative Bioinformatics; Vol. 17; No. 2-3; Art. No. 20200015; <a href="https://doi.org/10.1515/jib-2020-0015">10.1515/jib-2020-0015</a></li>
<li>Smith, Lucian P. and Moodie, Stuart L., el al. (2020) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20200812-071428761">Systems Biology Markup Language (SBML) Level 3 Package: Distributions, Version 1, Release 1</a>; Journal of Integrative Bioinformatics; Vol. 17; No. 2-3; Art. No. 20200018; <a href="https://doi.org/10.1515/jib-2020-0018">10.1515/jib-2020-0018</a></li>
<li>Schreiber, Falk and Sommer, Björn, el al. (2020) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20200706-133639336">Specifications of standards in systems and synthetic biology: status and developments in 2020</a>; Journal of Integrative Bioinformatics; Vol. 17; No. 2-3; Art. No. 20200022; <a href="https://doi.org/10.1515/jib-2020-0022">10.1515/jib-2020-0022</a></li>
<li>Malik-Sheriff, Rahuman S. and Glont, Mihai, el al. (2020) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20191111-111825904">BioModels—15 years of sharing computational models in life science</a>; Nucleic Acids Research; Vol. 48; No. D1; D407-D415; PMCID PMC7145643; <a href="https://doi.org/10.1093/nar/gkz1055">10.1093/nar/gkz1055</a></li>
<li>Stanford, Natalie J. and Scharm, Martin, el al. (2019) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20191014-145835970">Data Management in Computational Systems Biology: Exploring Standards, Tools, Databases, and Packaging Best Practices</a>; ISBN 978-1-4939-9735-0; Yeast Systems Biology: Methods and Protocols; 285-314; <a href="https://doi.org/10.1007/978-1-4939-9736-7_17">10.1007/978-1-4939-9736-7_17</a></li>
<li>Hucka, Michael and Bergmann, Frank T., el al. (2019) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20190624-083727440">Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core Release 2</a>; Journal of Integrative Bioinformatics; Vol. 16; No. 2; Art. No. 20190021; PMCID PMC6798823; <a href="https://doi.org/10.1515/jib-2019-0021">10.1515/jib-2019-0021</a></li>
<li>Neal, Maxwell Lewis and Hucka, Michael (2019) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20181031-091221344">Harmonizing semantic annotations for computational models in biology</a>; Briefings in Bioinformatics; Vol. 20; No. 2; 540-550; <a href="https://doi.org/10.1093/bib/bby087">10.1093/bib/bby087</a></li>
<li>Heirendt, Laurent and Arreckx, Sylvain, el al. (2019) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20220215-830211000">Creation and analysis of biochemical constraint-based models using the COBRA Toolbox v.3.0</a>; Nature Protocols; Vol. 14; No. 3; 639-702; PMCID PMC6635304; <a href="https://doi.org/10.1038/s41596-018-0098-2">10.1038/s41596-018-0098-2</a></li>
<li>Hucka, M. and Graham, M. J. (2018) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20180327-085537493">Software search is not a science, even among scientists: A survey of how scientists and engineers find software</a>; Journal of Systems and Software; Vol. 141; 171-191; <a href="https://doi.org/10.1016/j.jss.2018.03.047">10.1016/j.jss.2018.03.047</a></li>
<li>Schreiber, Falk and Bader, Gary D., el al. (2018) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20180413-161741220">Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2017</a>; Journal of Integrative Bioinformatics; Vol. 15; No. 1; Art. No. 20180013; <a href="https://doi.org/10.1515/jib-2018-0013">10.1515/jib-2018-0013</a></li>
<li>Hucka, Michael and Bergmann, Frank T., el al. (2018) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20180319-132054253">The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core</a>; Journal of Integrative Bioinformatics; Vol. 15; No. 1; Art. No. 20170081; PMCID PMC6167032; <a href="https://doi.org/10.1515/jib-2017-0081">10.1515/jib-2017-0081</a></li>
<li>Sansone, Susanna-Assunta and Hucka, Michael (2018) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20180928-104318352">FAIRsharing, a cohesive community approach to the growth in standards, repositories and policies</a>; <a href="https://doi.org/10.1101/245183">10.1101/245183</a></li>
<li>Myers, Chris J. and Bader, Gary, el al. (2017) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20180516-143900255">A brief history of COMBINE</a>; ISBN 978-1-5386-3428-8; Proceedings of the 2017 Winter Simulation Conference; 884-895; <a href="https://doi.org/10.1109/WSC.2017.8247840">10.1109/WSC.2017.8247840</a></li>
<li>Hucka, Michael (2017) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20170906-132631454">SBMLPkgSpec: a LaTeX style file for SBML package specification documents</a>; BMC Research Notes; Vol. 10; Art. No. 451; PMCID PMC5588604; <a href="https://doi.org/10.1186/s13104-017-2788-1">10.1186/s13104-017-2788-1</a></li>
<li>Schreiber, Falk and Bader, Gary D., el al. (2016) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20161220-145010966">Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2016</a>; Journal of Integrative Bioinformatics; Vol. 13; No. 3; Art. No. 289; PMCID PMC5431574; <a href="https://doi.org/10.2390/biecoll-jib-2016-289">10.2390/biecoll-jib-2016-289</a></li>
<li>Hucka, Michael and Smith, Lucian P. (2016) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20161220-110514676">SBML Level 3 package: Groups, Version 1 Release 1</a>; Journal of Integrative Bioinformatics; Vol. 13; No. 3; Art. No. 290; <a href="https://doi.org/10.2390/biecoll-jib-2016-290">10.2390/biecoll-jib-2016-290</a></li>
<li>Waltemath, Dagmar and Karr, Jonathan R., el al. (2016) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20160714-164837343">Toward community standards and software for whole-cell modeling</a>; IEEE Transactions on Biomedical Engineering; Vol. 63; No. 10; 2007-2014; PMCID PMC5451320; <a href="https://doi.org/10.1109/TBME.2016.2560762">10.1109/TBME.2016.2560762</a></li>
<li>Gómez, Harold F. and Hucka, Michael, el al. (2016) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20160218-152709778">MOCCASIN: converting MATLAB ODE models to SBML</a>; Bioinformatics; Vol. 32; No. 12; 1905-1906; PMCID PMC4908318; <a href="https://doi.org/10.1093/bioinformatics/btw056">10.1093/bioinformatics/btw056</a></li>
<li>Rodriguez, Nicolas and Thomas, Alex, el al. (2015) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20150624-081116770">JSBML 1.0: providing a smorgasbord of options to encode systems biology models</a>; Bioinformatics; Vol. 31; No. 20; 3380-3383; PMCID PMC4595895; <a href="https://doi.org/10.1093/bioinformatics/btv341">10.1093/bioinformatics/btv341</a></li>
<li>Ebrahim, Ali and Hucka, Michael (2015) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20151019-140746379">Do genome-scale models need exact solvers or clearer standards?</a>; Molecular Systems Biology; Vol. 11; No. 10; Art. No. 831; PMCID PMC4631202; <a href="https://doi.org/10.15252/msb.20156157">10.15252/msb.20156157</a></li>
<li>Hucka, Michael (2015) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20170616-153355069">Systems Biology Markup Language (SBML)</a>; ISBN 978-1-4614-6674-1; Encyclopedia of Computational Neuroscience; 2943-2944; <a href="https://doi.org/10.1007/978-1-4614-6675-8_376">10.1007/978-1-4614-6675-8_376</a></li>
<li>Hucka, Michael and Nickerson, David P., el al. (2015) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20150317-083603133">Promoting coordinated development of community-based information standards for modeling in biology: the COMBINE initiative</a>; Frontiers in Bioengineering and Biotechnology; Vol. 3; No. 2; Art. No. 19; PMCID PMC4338824; <a href="https://doi.org/10.3389/fbioe.2015.00019">10.3389/fbioe.2015.00019</a></li>
<li>Chelliah, Vijayalakshmi and Juty, Nick, el al. (2015) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20141203-072528682">BioModels: ten-year anniversary</a>; Nucleic Acids Research; Vol. 43; No. D1; D542-D548; PMCID PMC4383975; <a href="https://doi.org/10.1093/nar/gku1181">10.1093/nar/gku1181</a></li>
<li>Hucka, Michael (2015) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20160325-091121555">Organizing Community-Based Data Standards: Lessons from Developing a Successful Open Standard in Systems Biology</a>; ISBN 9781583818749; Astronomical Data Analysis Software and Systems XXIV; 575-578</li>
<li>Bergmann, Frank T. and Adams, Richard, el al. (2014) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20150205-152803537">COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project</a>; BMC Bioinformatics; Vol. 15; Art. No. 369; PMCID PMC4272562; <a href="https://doi.org/10.1186/s12859-014-0369-z">10.1186/s12859-014-0369-z</a></li>
<li>Waltemath, Dagmar and Bergmann, Frank T., el al. (2014) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20140815-121625086">Meeting report from the fourth meeting of the Computational Modeling in Biology Network (COMBINE)</a>; Standards in Genomics Sciences (SIGS); Vol. 9; No. 3; <a href="https://doi.org/10.4056/sigs.5279417">10.4056/sigs.5279417</a></li>
<li>Chaouiya, Claudine and Berénguier, Duncan, el al. (2013) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20140211-103736652">SBML qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools</a>; BMC Systems Biology; Vol. 7; Art. No. 135; PMCID PMC3892043; <a href="https://doi.org/10.1186/1752-0509-7-135">10.1186/1752-0509-7-135</a></li>
<li>Smith, Lucian P. and Hucka, Michael, el al. (2013) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20141028-180615369">SBML Level 3 Package Specification:  Hierarchical Model Composition</a></li>
<li>Büchel, Finja and Hucka, Michael (2013) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20131224-081718618">Path2Models: large-scale generation of computational models from biochemical pathway maps</a>; BMC Systems Biology; Vol. 7; Art. No. 116; PMCID PMC4228421; <a href="https://doi.org/10.1186/1752-0509-7-116">10.1186/1752-0509-7-116</a></li>
<li>Thiele, Ines and Hucka, Michael (2013) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20130625-131443617">A community-driven global reconstruction of human metabolism</a>; Nature Biotechnology; Vol. 31; No. 5; 419-425; PMCID PMC3856361; <a href="https://doi.org/10.1038/nbt.2488">10.1038/nbt.2488</a></li>
<li>Hucka, Michael (2013) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20130115-163641567">Approximate Spatial Layout Processing in the Visual System:  Modeling Texture-Based Segmentation and Shape Estimation</a></li>
<li>Finney, A. and Hucka, M. (2012) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20121102-164345599">Systems biology markup language: Level 2 and beyond</a>; Biochemical Society Transactions; Vol. 31; No. 6; 1472-1473</li>
<li>Waltemath, Dagmar and Adams, Richard, el al. (2011) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20120417-151008602">Reproducible computational biology experiments with SED-ML - The Simulation Experiment Description Markup Language</a>; BMC Systems Biology; Vol. 5; Art. No. 198; PMCID PMC3292844; <a href="https://doi.org/10.1186/1752-0509-5-198">10.1186/1752-0509-5-198</a></li>
<li>Hucka, Michael and Bergmann, Frank T., el al. (2011) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20130104-135113975">A profile of today's SBML-compatible software</a>; ISBN 9781467300261; 2011 IEEE Seventh International Conference on e-Science Workshops; 143-150; <a href="https://doi.org/10.1109/eScienceW.2011.28">10.1109/eScienceW.2011.28</a></li>
<li>Le Novère, Nicolas and Hucka, Michael, el al. (2011) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20121221-151957383">Meeting report from the first meetings of the Computational Modeling in Biology Network (COMBINE)</a>; Standards in Genomics Sciences (SIGS); Vol. 5; No. 2; PMCID PMC3235518; <a href="https://doi.org/10.4056/sigs.2034671">10.4056/sigs.2034671</a></li>
<li>Courtot, Mélanie and Hucka, Michael (2011) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20111128-111835221">Controlled vocabularies and semantics in systems biology</a>; Molecular Systems Biology; Vol. 7; Art. No. 543; PMCID PMC3261705; <a href="https://doi.org/10.1038/msb.2011.77">10.1038/msb.2011.77</a></li>
<li>Smith, Lucian P. and Hucka, Michael (2011) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20130108-165049385">SBML Level 3 Package Specification:  Hierarchical Model Composition, Version 1 Draft</a></li>
<li>Dräger, Andreas and Rodriguez, Nicolas, el al. (2011) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20110804-100157010">JSBML: a flexible Java library for working with SBML</a>; Bioinformatics; Vol. 27; No. 15; 2167-2168; PMCID PMC3137227; <a href="https://doi.org/10.1093/bioinformatics/btr361">10.1093/bioinformatics/btr361</a></li>
<li>Waltemath, Dagmar and Hucka, Michael (2011) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20110525-113431794">Minimum Information About a Simulation Experiment (MIASE)</a>; PLoS Computational Biology; Vol. 7; No. 4; Art. No. e1001122; PMCID PMC3084216; <a href="https://doi.org/10.1371/journal.pcbi.1001122">10.1371/journal.pcbi.1001122</a></li>
<li>Waltemath, Dagmar and Swainston, Neil, el al. (2011) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20130108-162112228">SBML Level 3 Package Proposal: Annotation</a>; Nature Precedings; <a href="https://doi.org/10.1038/npre.2011.5610.1">10.1038/npre.2011.5610.1</a></li>
<li>Hucka, Michael and Bergmann, Frank T., el al. (2010) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20141028-175133969">The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 1 Core</a></li>
<li>Hucka, Michael and Bergmann, Frank T., el al. (2010) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20130108-170237140">The Systems Biology Markup Language (SBML):  Language Specification for Level 3 Version 1 Core</a>; Nature Precedings; Art. No. 4959; <a href="https://doi.org/10.1038/npre.2010.4959.1">10.1038/npre.2010.4959.1</a></li>
<li>Demir, Emek and Hucka, Michael (2010) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20100929-111828470">The BioPAX community standard for pathway data sharing</a>; Nature Biotechnology; Vol. 28; No. 9; 935-942; PMCID PMC3001121; <a href="https://doi.org/10.1038/nbt.1666">10.1038/nbt.1666</a></li>
<li>Li, Chen and Donizelli, Marco, el al. (2010) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20101025-144736877">BioModels Database: An enhanced, curated and annotated resource for published quantitative kinetic models</a>; BMC Systems Biology; Vol. 4; Art. No. 92; PMCID PMC2909940; <a href="https://doi.org/10.1186/1752-0509-4-92">10.1186/1752-0509-4-92</a></li>
<li>Hucka, Michael and Le Novère, Nicolas (2010) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20101208-082834918">Software that goes with the flow in systems biology</a>; BMC Biology; Vol. 8; 140-142; PMCID PMC2993668; <a href="https://doi.org/10.1186/1741-7007-8-140">10.1186/1741-7007-8-140</a></li>
<li>Le Novère, Nicolas and Hucka, Michael, el al. (2009) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20090826-112850998">The Systems Biology Graphical Notation</a>; Nature Biotechnology; Vol. 27; No. 8; 735-741; <a href="https://doi.org/10.1038/nbt.1558">10.1038/nbt.1558</a></li>
<li>Dräger, Andreas and Planatscher, Hannes, el al. (2009) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20090821-103810499">SBML2LATEX: Conversion of SBML files into human-readable reports</a>; Bioinformatics; Vol. 25; No. 11; 1455-1456; PMCID PMC2682517; <a href="https://doi.org/10.1093/bioinformatics/btp170">10.1093/bioinformatics/btp170</a></li>
<li>Hucka, Michael (2009) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20121024-180733852">An overview of several standardization efforts for systems biology</a>; Journal of Physiological Sciences; Vol. 59; No. S1; 102-102</li>
<li>Hucka, Michael and Schaff, James (2009) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20130107-153635162">Trends and Tools for Modeling in Modern Biology</a>; ISBN 978-1-4020-9236-7; Photosynthesis in silico: Understanding Complexity from Molecules to Ecosystems; 3-15; <a href="https://doi.org/10.1007/978-1-4020-9237-4_1">10.1007/978-1-4020-9237-4_1</a></li>
<li>Hucka, Michael and Hoops, Stefan, el al. (2008) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20130111-154935747">Systems Biology Markup Language (SBML) Level 2: Structures and Facilities for Model Definitions</a>; Nature Precedings; <a href="https://doi.org/10.1038/npre.2008.2715.1">10.1038/npre.2008.2715.1</a></li>
<li>Herrgård, Markus J. and Swainston, Neil, el al. (2008) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20090430-074605876">A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology</a>; Nature Biotechnology; Vol. 26; No. 10; 1155-1160; PMCID PMC4018421; <a href="https://doi.org/10.1038/nbt1492">10.1038/nbt1492</a></li>
<li>Le Novère, Nicolas and Moodie, Stuart, el al. (2008) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20130110-104912003">Systems Biology Graphical Notation: Process Diagram Level 1</a>; Nature Precedings</li>
<li>Bornstein, Benjamin J. and Keating, Sarah M., el al. (2008) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20121025-171520224">LibSBML:  an API library for SBML</a>; Bioinformatics; Vol. 24; No. 6; 880-881; PMCID PMC2517632; <a href="https://doi.org/10.1093/bioinformatics/btn051">10.1093/bioinformatics/btn051</a></li>
<li>Hucka, Michael and Finney, Andrew M., el al. (2007) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20130111-164005593">Systems Biology Markup Language (SBML) Level 2: Structures and Facilities for Model Definitions</a>; Nature Precedings</li>
<li>Hucka, Michael (2007) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20101112-095815264">SBML, BioModels.net, and SBGN</a>; Nature Precedings; <a href="https://doi.org/10.1038/npre.2007.20.1">10.1038/npre.2007.20.1</a></li>
<li>Hucka, Michael and Keating, Sarah (2007) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20101112-100023782">A tutorial about SBML and SBML Level 2 Version 2</a>; Nature Precedings; <a href="https://doi.org/10.1038/npre.2007.19.1">10.1038/npre.2007.19.1</a></li>
<li>Hucka, Michael (2007) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20101112-095724862">Evolving standards and infrastructure for systems biology: SBML, SBGN, and BioModels.net</a>; Nature Precedings; <a href="https://doi.org/10.1038/npre.2007.20.1">10.1038/npre.2007.20.1</a></li>
<li>Shapiro, Bruce E. and Finney, Andrew, el al. (2007) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20130107-155707023">SBML Models and MathSBML</a>; ISBN 9781597455312; Introduction to Systems Biology; 395-421</li>
<li>Sauro, Herbert M. and Uhrmacher, Adelinde M., el al. (2006) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20130104-155630506">Challenges for Modeling and Simulation Methods in Systems Biology</a>; ISBN 1-4244-0500-9; Proceedings of the 2006 Winter Simulation Conference; 1720-1730; <a href="https://doi.org/10.1109/WSC.2006.322948">10.1109/WSC.2006.322948</a></li>
<li>Hucka, Michael and Finney, Andrew, el al. (2006) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20130111-172633006">Systems Biology Markup Language (SBML) Level 2:  Structures and Facilities for Model Definitions</a></li>
<li>Hlavacek, William S. and Faeder, James R., el al. (2006) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20121026-104604268">Rules for Modeling Signal-Transduction Systems</a>; Science's STKE: signal transduction knowledge environment; Vol. 2006; No. 344; re6; <a href="https://doi.org/10.1126/stke.3442006re6">10.1126/stke.3442006re6</a></li>
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