@article{https://authors.library.caltech.edu/records/exm7m-tr104,
    author = "König, Matthias and Gleeson, Padraig and Golebiewski, Martin and Gorochowski, Thomas E. and Hucka, Michael and Keating, Sarah M. and Myers, Chris J. and Nickerson, David P. and Sommer, Björn and Waltemath, Dagmar and Schreiber, Falk",
    title = "Specifications of standards in systems and synthetic biology: status and developments in 2022 and the COMBINE meeting 2022",
    year = "2023",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20230420-698969800.9",
    id = "https://authors.library.caltech.edu/records/exm7m-tr104",
    issn = "1613-4516",
    doi = "10.1515/jib-2023-0004",
    volume = "20",
    number = "1",
    pmcid = "PMC10063176",
    pages = "Art. No. 20230004"
}


@article{https://authors.library.caltech.edu/records/m0pkt-b8p15,
    author = "Garijo, Daniel and Ménager, Hervé and Hwang, Lorraine and Trisovic, Ana and Hucka, Michael and Morrell, Thomas and Allen, Alice",
    title = "Nine best practices for research software registries and repositories",
    year = "2022",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20220916-666084000",
    id = "https://authors.library.caltech.edu/records/m0pkt-b8p15",
    issn = "2376-5992",
    doi = "10.7717/peerj-cs.1023",
    volume = "8",
    pages = "Art. No. e1023"
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@article{https://authors.library.caltech.edu/records/b9rw0-jam27,
    author = "Schreiber, Falk and Gleeson, Padraig and Golebiewski, Martin and Gorochowski, Thomas E. and Hucka, Michael and Keating, Sarah M. and König, Matthias and Myers, Chris J. and Nickerson, David P. and Sommer, Björn and Waltemath, Dagmar",
    title = "Specifications of standards in systems and synthetic biology: status and developments in 2021",
    year = "2021",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20211209-231186000",
    id = "https://authors.library.caltech.edu/records/b9rw0-jam27",
    issn = "1613-4516",
    doi = "10.1515/jib-2021-0026",
    volume = "18",
    number = "3",
    pmcid = "PMC8573232",
    pages = "Art. No. 20210026"
}


@article{https://authors.library.caltech.edu/records/2s3jq-t6239,
    author = "Keating, Sarah M. and Waltemath, Dagmar and König, Matthias and Zhang, Fengkai and Dräger, Andreas and Chaouiya, Claudine and Bergmann, Frank T. and Finney, Andrew and Gillespie, Colin S. and Helikar, Tomáš and Hoops, Stefan and Malik‐Sheriff, Rahuman S. and Moodie, Stuart L. and Moraru, Ion I. and Myers, Chris J. and Naldi, Aurélien and Olivier, Brett G. and Sahle, Sven and Schaff, James C. and Smith, Lucian P. and Swat, Maciej J. and Thieffry, Denis and Watanabe, Leandro and Wilkinson, Darren J. and Blinov, Michael L. and Begley, Kimberly and Faeder, James R. and Gómez, Harold F. and Hamm, Thomas M. and Inagaki, Yuichiro and Liebermeister, Wolfram and Lister, Allyson L. and Lucio, Daniel and Mjolsness, Eric and Proctor, Carole J. and Raman, Karthik and Rodriguez, Nicolas and Shaffer, Clifford A. and Shapiro, Bruce E. and Stelling, Joerg and Swainston, Neil and Tanimura, Naoki and Wagner, John and Meier‐Schellersheim, Martin and Sauro, Herbert M. and Palsson, Bernhard. and Bolouri, Hamid and Kitano, Hiroaki and Funahashi, Akira and Hermjakob, Henning and Doyle, John C. and Hucka, Michael and Adams, Richard R. and Allen, Nicholas A. and Angermann, Bastian R. and Antoniotti, Marco and Bader, Gary D. and Červený, Jan and Courtot, Mélanie and Cox, Chris D. and Dalle Pezze, Piero and Demir, Emek and Denney, William S. and Dharuri, Harish and Dorier, Julien and Drasdo, Dirk and Ebrahim, Ali and Eichner, Johannes and Elf, Johan and Endler, Lukas and Evelo, Chris T. and Flamm, Christoph and Fleming, Ronan M. T. and Fröhlich, Martina and Glont, Mihai and Gonçalves, Emanuel and Golebiewski, Martin and Grabski, Hovakim and Gutteridge, Alex and Hachmeister, Damon and Harris, Leonard A. and Heavner, Benjamin D. and Henkel, Ron and Hlavacek, William S. and Hu, Bin and Hyduke, Daniel R. and Jong, Hidde and Juty, Nick and Karp, Peter D and Karr, Jonathan R. and Kell, Douglas B. and Keller, Roland and Kiselev, Ilya and Klamt, Steffen and Klipp, Edda and Knüpfer, Christian and Kolpakov, Fedor and Krause, Falko and Kutmon, Martina and Laibe, Camille and Lawless, Conor and Li, Lu and Loew, Leslie M. and Machne, Rainer and Matsuoka, Yukiko and Mendes, Pedro and Mi, Huaiyu and Mittag, Florian and Monteiro, Pedro T and Natarajan, Kedar Nath and Nielsen, Poul M. F. and Nguyen, Tramy and Palmisano, Alida and Pettit, Jean‐Baptiste and Pfau, Thomas and Phair, Robert D. and Radivoyevitch, Tomas and Rohwer, Johann M. and Ruebenacker, Oliver A. and Saez‐Rodriguez, Julio and Scharm, Martin and Schmidt, Henning and Schreiber, Falk and Schubert, Michael and Schulte, Roman and Sealfon, Stuart C. and Smallbone, Kieran and Soliman, Sylvain and Stefan, Melanie I. and Sullivan, Devin P. and Takahashi, Koichi and Teusink, Bas and Tolnay, David and Vazirabad, Ibrahim and Kamp, Axel and Wittig, Ulrike and Wrzodek, Clemens and Wrzodek, Finja and Xenarios, Ioannis and Zhukova, Anna and Zucker, Jeremy",
    title = "SBML Level 3: an extensible format for the exchange and reuse of biological models",
    year = "2020",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20200827-073238775",
    id = "https://authors.library.caltech.edu/records/2s3jq-t6239",
    issn = "1744-4292",
    doi = "10.15252/msb.20199110",
    volume = "16",
    number = "8",
    pages = "Art. No. e9110"
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@article{https://authors.library.caltech.edu/records/1ec8y-qr374,
    author = "Schreiber, Falk and Sommer, Björn and Czauderna, Tobias and Golebiewski, Martin and Gorochowski, Thomas E. and Hucka, Michael and Keating, Sarah M. and König, Matthias and Myers, Chris and Nickerson, David and Waltemath, Dagmar",
    title = "Specifications of standards in systems and synthetic biology: status and developments in 2020",
    year = "2020",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20200706-133639336",
    id = "https://authors.library.caltech.edu/records/1ec8y-qr374",
    issn = "1613-4516",
    doi = "10.1515/jib-2020-0022",
    volume = "17",
    number = "2-3",
    pages = "Art. No. 20200022"
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@article{https://authors.library.caltech.edu/records/f7evg-ea529,
    author = "Smith, Lucian P. and Moodie, Stuart L. and Bergmann, Frank T. and Gillespie, Colin and Keating, Sarah M. and König, Matthias and Myers, Chris J. and Swat, Maciek J. and Wilkinson, Darren J. and Hucka, Michael",
    title = "Systems Biology Markup Language (SBML) Level 3 Package: Distributions, Version 1, Release 1",
    year = "2020",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20200812-071428761",
    id = "https://authors.library.caltech.edu/records/f7evg-ea529",
    issn = "1613-4516",
    doi = "10.1515/jib-2020-0018",
    volume = "17",
    number = "2-3",
    pages = "Art. No. 20200018"
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@article{https://authors.library.caltech.edu/records/x9nn4-yvh94,
    author = "Zhang, Fengkai and Smith, Lucian P. and Blinov, Michael L. and Faeder, James and Hlavacek, William S. and Tapia, Jose Juan and Keating, Sarah M. and Rodriguez, Nicolas and Dräger, Andreas and Harris, Leonard A. and Finney, Andrew and Hu, Bin and Hucka, Michael and Meier-Schellersheim, Martin",
    title = "Systems biology markup language (SBML) level 3 package: multistate, multicomponent and multicompartment species, version 1, release 2",
    year = "2020",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20200713-124645293",
    id = "https://authors.library.caltech.edu/records/x9nn4-yvh94",
    issn = "1613-4516",
    doi = "10.1515/jib-2020-0015",
    volume = "17",
    number = "2-3",
    pages = "Art. No. 20200015"
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@article{https://authors.library.caltech.edu/records/8ztff-8xy27,
    author = "Waltemath, Dagmar and Golebiewski, Martin and Blinov, Michael L. and Gleeson, Padraig and Hermjakob, Henning and Hucka, Michael and Inau, Esther Thea and Keating, Sarah M. and König, Matthias and Krebs, Olga and Malik-Sheriff, Rahuman S. and Nickerson, David and Oberortner, Ernst and Sauro, Herbert M. and Schreiber, Falk and Smith, Lucian and Stefan, Melanie I. and Wittig, Ulrike and Myers, Chris J.",
    title = "The first 10 years of the international coordination network for standards in systems and synthetic biology (COMBINE)",
    year = "2020",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20200708-073700691",
    id = "https://authors.library.caltech.edu/records/8ztff-8xy27",
    issn = "1613-4516",
    doi = "10.1515/jib-2020-0005",
    volume = "17",
    number = "2-3",
    pages = "Art. No. 20200005"
}


@article{https://authors.library.caltech.edu/records/9f4sy-arc24,
    author = "Malik-Sheriff, Rahuman S. and Glont, Mihai and Nguyen, Tung V. N. and Tiwari, Krishna and Roberts, Matthew G. and Xavier, Ashley and Vu, Manh T. and Men, Jinghao and Maire, Matthieu and Kananathan, Sarubini and Fairbanks, Emma L. and Meyer, Johannes P. and Arankalle, Chinmay and Varusai, Thawfeek M. and Knight-Schrijver, Vincent and Li, Lu and Dueñas-Roca, Corina and Dass, Gaurhari and Keating, Sarah M. and Park, Young M. and Buso, Nicola and Rodriguez, Nicolas and Hucka, Michael and Hermjakob, Henning",
    title = "BioModels—15 years of sharing computational models in life science",
    year = "2020",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20191111-111825904",
    id = "https://authors.library.caltech.edu/records/9f4sy-arc24",
    issn = "0305-1048",
    doi = "10.1093/nar/gkz1055",
    volume = "48",
    number = "D1",
    pmcid = "PMC7145643",
    pages = "D407-D415"
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@book{https://authors.library.caltech.edu/records/nrvt9-xae73,
    author = "Stanford, Natalie J. and Scharm, Martin and Dobson, Paul D. and Golebiewski, Martin and Hucka, Michael and Kothamachu, Varun B. and Nickerson, David and Owen, Stuart and Pahle, Jürgen and Wittig, Ulrike and Waltemath, Dagmar and Goble, Carole and Mendes, Pedro and Snoep, Jacky",
    title = "Data Management in Computational Systems Biology: Exploring Standards, Tools, Databases, and Packaging Best Practices",
    year = "2019",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20191014-145835970",
    id = "https://authors.library.caltech.edu/records/nrvt9-xae73",
    isbn = "978-1-4939-9735-0",
    doi = "10.1007/978-1-4939-9736-7\_17",
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@article{https://authors.library.caltech.edu/records/r1ga8-en250,
    author = "Hucka, Michael and Bergmann, Frank T. and Chaouiya, Claudine and Dräger, Andreas and Hoops, Stefan and Keating, Sarah M. and König, Matthias and Le Novère, Nicolas and Myers, Chris J. and Olivier, Brett G. and Sahle, Sven and Schaff, James C. and Sheriff, Rahuman and Smith, Lucian P. and Waltemath, Dagmar and Wilkinson, Darren J. and Zhang, Fengkai",
    title = "Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core Release 2",
    year = "2019",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20190624-083727440",
    id = "https://authors.library.caltech.edu/records/r1ga8-en250",
    issn = "1613-4516",
    doi = "10.1515/jib-2019-0021",
    volume = "16",
    number = "2",
    pmcid = "PMC6798823",
    pages = "Art. No. 20190021"
}


@article{https://authors.library.caltech.edu/records/t50e8-sq688,
    author = "Heirendt, Laurent and Arreckx, Sylvain and Pfau, Thomas and Mendoza, Sebastián N. and Richelle, Anne and Heinken, Almut and Haraldsdóttir, Hulda S. and Wachowiak, Jacek and Keating, Sarah M. and Vlasov, Vanja and Magnusdóttir, Stefania and Ng, Chiam Yu and Preciat, German and Žagare, Alise and Chan, Siu H. J. and Aurich, Maike K. and Clancy, Catherine M. and Modamio, Jennifer and Sauls, John T. and Noronha, Alberto and Bordbar, Aarash and Cousins, Benjamin and El Assal, Diana C. and Valcarcel, Luis V. and Apaolaza, Iñigo and Ghaderi, Susan and Ahookhosh, Masoud and Ben Guebila, Marouen and Kostromins, Andrejs and Sompairac, Nicolas and Le, Hoai M. and Ma, Ding and Sun, Yuekai and Wang, Lin and Yurkovich, James T. and Oliveira, Miguel A. P. and Vuong, Phan T. and El Assal, Lemmer P. and Kuperstein, Inna and Zinovyev, Andrei and Hinton, H. Scott and Bryant, William A. and Aragón Artacho, Francisco J. and Planes, Francisco J. and Stalidzans, Egils and Maass, Alejandro and Vempala, Santosh and Hucka, Michael and Saunders, Michael A. and Maranas, Costas D. and Lewis, Nathan E. and Sauter, Thomas and Palsson, Bernhard Ø. and Thiele, Ines and Fleming, Ronan M. T.",
    title = "Creation and analysis of biochemical constraint-based models using the COBRA Toolbox v.3.0",
    year = "2019",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20220215-830211000",
    id = "https://authors.library.caltech.edu/records/t50e8-sq688",
    issn = "1754-2189",
    doi = "10.1038/s41596-018-0098-2",
    volume = "14",
    number = "3",
    pmcid = "PMC6635304",
    pages = "639-702"
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@article{https://authors.library.caltech.edu/records/s8fkc-fm930,
    author = "Neal, Maxwell Lewis and Hucka, Michael",
    title = "Harmonizing semantic annotations for computational models in biology",
    year = "2019",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20181031-091221344",
    id = "https://authors.library.caltech.edu/records/s8fkc-fm930",
    issn = "1467-5463",
    doi = "10.1093/bib/bby087",
    volume = "20",
    number = "2",
    pages = "540-550"
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@other{https://authors.library.caltech.edu/records/sqgxm-kp027,
    author = "Sansone, Susanna-Assunta and Hucka, Michael",
    title = "FAIRsharing, a cohesive community approach to the growth in standards, repositories and policies",
    year = "2018",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20180928-104318352",
    id = "https://authors.library.caltech.edu/records/sqgxm-kp027",
    doi = "10.1101/245183"
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@article{https://authors.library.caltech.edu/records/jmj9d-dke44,
    author = "Hucka, M. and Graham, M. J.",
    title = "Software search is not a science, even among scientists: A survey of how scientists and engineers find software",
    year = "2018",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20180327-085537493",
    id = "https://authors.library.caltech.edu/records/jmj9d-dke44",
    issn = "0164-1212",
    doi = "10.1016/j.jss.2018.03.047",
    volume = "141",
    pages = "171-191"
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@article{https://authors.library.caltech.edu/records/8ghxs-99b69,
    author = "Schreiber, Falk and Bader, Gary D. and Gleeson, Padraig and Golebiewski, Martin and Hucka, Michael and Keating, Sarah M. and Le Novère, Nicolas and Myers, Chris and Nickerson, David and Sommer, Björn and Waltemath, Dagmar",
    title = "Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2017",
    year = "2018",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20180413-161741220",
    id = "https://authors.library.caltech.edu/records/8ghxs-99b69",
    issn = "1613-4516",
    doi = "10.1515/jib-2018-0013",
    volume = "15",
    number = "1",
    pages = "Art. No. 20180013"
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@article{https://authors.library.caltech.edu/records/qtaqh-2c281,
    author = "Hucka, Michael and Bergmann, Frank T. and Dräger, Andreas and Hoops, Stefan and Keating, Sarah M. and Le Novère, Nicolas and Myers, Chris J. and Olivier, Brett G. and Sahle, Sven and Schaff, James C. and Smith, Lucian P. and Waltemath, Dagmar and Wilkinson, Darren J.",
    title = "The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core",
    year = "2018",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20180319-132054253",
    id = "https://authors.library.caltech.edu/records/qtaqh-2c281",
    issn = "1613-4516",
    doi = "10.1515/jib-2017-0081",
    volume = "15",
    number = "1",
    pmcid = "PMC6167032",
    pages = "Art. No. 20170081"
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@book{https://authors.library.caltech.edu/records/9yj6a-wqs70,
    author = "Myers, Chris J. and Bader, Gary and Gleeson, Padraig and Golebiewski, Martin and Hucka, Michael and Le Novère, Nicolas and Nickerson, David P. and Schreiber, Falk and Waltemath, Dagmar",
    title = "A brief history of COMBINE",
    year = "2017",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20180516-143900255",
    id = "https://authors.library.caltech.edu/records/9yj6a-wqs70",
    isbn = "978-1-5386-3428-8",
    doi = "10.1109/WSC.2017.8247840",
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@article{https://authors.library.caltech.edu/records/vjvcg-hw104,
    author = "Hucka, Michael",
    title = "SBMLPkgSpec: a LaTeX style file for SBML package specification documents",
    year = "2017",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20170906-132631454",
    id = "https://authors.library.caltech.edu/records/vjvcg-hw104",
    issn = "1756-0500",
    doi = "10.1186/s13104-017-2788-1",
    volume = "10",
    pmcid = "PMC5588604",
    pages = "Art. No. 451"
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@article{https://authors.library.caltech.edu/records/9bjy1-bph27,
    author = "Hucka, Michael and Smith, Lucian P.",
    title = "SBML Level 3 package: Groups, Version 1 Release 1",
    year = "2016",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20161220-110514676",
    id = "https://authors.library.caltech.edu/records/9bjy1-bph27",
    issn = "1613-4516",
    doi = "10.2390/biecoll-jib-2016-290",
    volume = "13",
    number = "3",
    pages = "Art. No. 290"
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@article{https://authors.library.caltech.edu/records/9k6d0-5ca10,
    author = "Schreiber, Falk and Bader, Gary D. and Gleeson, Padraig and Golebiewski, Martin and Hucka, Michael and Le Novère, Nicolas and Myers, Chris and Nickerson, David and Sommer, Björn and Waltemath, Dagmar",
    title = "Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2016",
    year = "2016",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20161220-145010966",
    id = "https://authors.library.caltech.edu/records/9k6d0-5ca10",
    issn = "1613-4516",
    doi = "10.2390/biecoll-jib-2016-289",
    volume = "13",
    number = "3",
    pmcid = "PMC5431574",
    pages = "Art. No. 289"
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@article{https://authors.library.caltech.edu/records/sc6qr-gzz36,
    author = "Waltemath, Dagmar and Karr, Jonathan R. and Bergmann, Frank T. and Chelliah, Vijayalakshmi and Hucka, Michael and Krantz, Marcus and Liebermeister, Wolfram and Mendes, Pedro and Myers, Chris J. and Pir, Pinar and Alaybeyoglu, Begum and Aranganathan, Naveen K. and Baghalian, Kambiz and Bittig, Arne T. and Burke, Paulo E. Pinto and Cantarelli, Matteo and Chew, Yin Hoon and Costa, Rafael S. and Cursons, Joseph and Czauderna, Tobias and Goldberg, Arthur P. and Gómez, Harold F. and Hahn, Jens and Hameri, Tuure and Hernandez Gardiol, Daniel F. and Kazakiewicz, Denis and Kiselev, Ilya and Knight-Schrijver, Vincent and Knuepfer, Christian and Koenig, Matthias and Lee, Daewon and Lloret-Villas, Audald and Mandrik, Nikita and Medley, J. Kyle and Moreau, Bertrand and Naderi-Meshkin, Hojjat and Palaniappan, Sucheendra K. and Priego-Espinosa, Daniel and Scharm, Martin and Sharma, Mahesh and Smallbone, Kieran and Stanford, Natalie J. and Song, Je-Hoon and Theile, Tom and Tokic, Milenko and Tomar, Namrata and Toure, Vasundra and Uhlendorf, Jannis and Varusai, Thawfeek M. and Watanabe, Leandro H. and Wendland, Florian and Wolfien, Markus and Yurkovich, James T. and Zhu, Yan and Zardilis, Argyris and Zhukova, Anna and Schreiber, Falk",
    title = "Toward community standards and software for whole-cell modeling",
    year = "2016",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20160714-164837343",
    id = "https://authors.library.caltech.edu/records/sc6qr-gzz36",
    issn = "0018-9294",
    doi = "10.1109/TBME.2016.2560762",
    volume = "63",
    number = "10",
    pmcid = "PMC5451320",
    pages = "2007-2014"
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@article{https://authors.library.caltech.edu/records/pmscj-3a535,
    author = "Gómez, Harold F. and Hucka, Michael and Keating, Sarah M. and Nudelman, German and Iber, Dagmar and Sealfon, Stuart C.",
    title = "MOCCASIN: converting MATLAB ODE models to SBML",
    year = "2016",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20160218-152709778",
    id = "https://authors.library.caltech.edu/records/pmscj-3a535",
    issn = "1367-4803",
    doi = "10.1093/bioinformatics/btw056",
    volume = "32",
    number = "12",
    pmcid = "PMC4908318",
    pages = "1905-1906"
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@article{https://authors.library.caltech.edu/records/ewx13-hyb05,
    author = "Rodriguez, Nicolas and Thomas, Alex and Watanabe, Leandro and Vazirabad, Ibrahim Y. and Kofia, Victor and Gómez, Harold F. and Mittag, Florian and Matthes, Jakob and Rudolph, Jan and Wrzodek, Finja and Netz, Eugen and Diamantikos, Alexander and Eichner, Johannes and Keller, Roland and Wrzodek, Clemens and Fröhlich, Sebastian and Lewis, Nathan E. and Myers, Chris J. and Le Novère, Nicolas and Palsson, Bernhard Ø. and Hucka, Michael and Dräger, Andreas",
    title = "JSBML 1.0: providing a smorgasbord of options to encode systems biology models",
    year = "2015",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20150624-081116770",
    id = "https://authors.library.caltech.edu/records/ewx13-hyb05",
    issn = "1367-4803",
    doi = "10.1093/bioinformatics/btv341",
    volume = "31",
    number = "20",
    pmcid = "PMC4595895",
    pages = "3380-3383"
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@article{https://authors.library.caltech.edu/records/hjmq6-81q65,
    author = "Ebrahim, Ali and Hucka, Michael",
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    url = "https://resolver.caltech.edu/CaltechAUTHORS:20151019-140746379",
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    doi = "10.15252/msb.20156157",
    volume = "11",
    number = "10",
    pmcid = "PMC4631202",
    pages = "Art. No. 831"
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    author = "Hucka, Michael",
    title = "Systems Biology Markup Language (SBML)",
    year = "2015",
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    doi = "10.1007/978-1-4614-6675-8\_376",
    pages = "2943-2944"
}


@article{https://authors.library.caltech.edu/records/mq2hs-3wc13,
    author = "Hucka, Michael and Nickerson, David P. and Bader, Gary D. and Bergmann, Frank T. and Cooper, Jonathan and Demir, Emek and Gamy, Alan and Golebiewski, Martin and Myers, Chris J. and Schreiber, Falk and Waltemath, Dagmar and Le Novère, Nicolas",
    title = "Promoting coordinated development of community-based information standards for modeling in biology: the COMBINE initiative",
    year = "2015",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20150317-083603133",
    id = "https://authors.library.caltech.edu/records/mq2hs-3wc13",
    issn = "2296-4185",
    doi = "10.3389/fbioe.2015.00019",
    volume = "3",
    number = "2",
    pmcid = "PMC4338824",
    pages = "Art. No. 19"
}


@article{https://authors.library.caltech.edu/records/px93n-9xb50,
    author = "Chelliah, Vijayalakshmi and Juty, Nick and Ajmera, Ishan and Ali, Raza and Dumousseau, Marine and Glont, Mihai and Hucka, Michael and Jalowicki, Gaël and Keating, Sarah and Knight-Schrijver, Vincent and Lloret-Villas, Audald and Natarajan, Kedar Nath and Pettit, Jean-Baptiste and Rodriguez, Nicolas and Schubert, Michael and Wimalaratne, Sarala M. and Zhao, Yangyang and Hermjakob, Henning and Le Novère, Nicolas and Laibe, Camille",
    title = "BioModels: ten-year anniversary",
    year = "2015",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20141203-072528682",
    id = "https://authors.library.caltech.edu/records/px93n-9xb50",
    issn = "0305-1048",
    doi = "10.1093/nar/gku1181",
    volume = "43",
    number = "D1",
    pmcid = "PMC4383975",
    pages = "D542-D548"
}


@book{https://authors.library.caltech.edu/records/jtmc8-kqq83,
    author = "Hucka, Michael",
    title = "Organizing Community-Based Data Standards: Lessons from Developing a Successful Open Standard in Systems Biology",
    year = "2015",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20160325-091121555",
    id = "https://authors.library.caltech.edu/records/jtmc8-kqq83",
    isbn = "9781583818749",
    pages = "575-578"
}


@article{https://authors.library.caltech.edu/records/46vdt-hr178,
    author = "Bergmann, Frank T. and Adams, Richard and Moodie, Stuart and Cooper, Jonathan and Glont, Mihai and Golebiewski, Martin and Hucka, Michael and Laibe, Camille and Miller, Andrew K. and Nickerson, David P. and Olivier, Brett G. and Rodriguez, Nicolas and Sauro, Herbert M. and Scharm, Martin and Soiland-Reyes, Stian and Waltemath, Dagmar and Yvon, Florent and Le Novère, Nicolas",
    title = "COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project",
    year = "2014",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20150205-152803537",
    id = "https://authors.library.caltech.edu/records/46vdt-hr178",
    issn = "1471-2105",
    doi = "10.1186/s12859-014-0369-z",
    volume = "15",
    pmcid = "PMC4272562",
    pages = "Art. No. 369"
}


@article{https://authors.library.caltech.edu/records/nqkbt-69j78,
    author = "Waltemath, Dagmar and Bergmann, Frank T. and Chaouiya, Claudine and Czauderna, Tobias and Gleeson, Padraig and Goble, Carole and Golebiewski, Martin and Hucka, Michael and Juty, Nick and Krebs, Olga and Le Novère, Nicolas and Mi, Huaiyu and Moraru, Ion I. and Myers, Chris J. and Nickerson, David and Olivier, Brett G. and Rodriguez, Nicolas and Schreiber, Falk and Smith, Lucian and Zhang, Fengkai and Bonnet, Eric",
    title = "Meeting report from the fourth meeting of the Computational Modeling in Biology Network (COMBINE)",
    year = "2014",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20140815-121625086",
    id = "https://authors.library.caltech.edu/records/nqkbt-69j78",
    issn = "1944-3277",
    doi = "10.4056/sigs.5279417",
    volume = "9",
    number = "3"
}


@article{https://authors.library.caltech.edu/records/q306x-4ad80,
    author = "Chaouiya, Claudine and Berénguier, Duncan and Keating, Sarah M. and Naldi, Aurélien and van Iersel, Martijn P. and Rodriguez, Nicolas and Dräger, Andreas and Büchel, Finja and Cokelaer, Thomas and Kowal, Bryan and Wicks, Benjamin and Gonçalves, Emanuel and Dorier, Julien and Page, Michel and Monteiro, Pedro T. and von Kamp, Axel and Xenarios, Ioannis and de Jong, Hidde and Hucka, Michael and Klamt, Steffen and Thieffry, Denis and Le Novère, Nicolas and Saez-Rodriguez, Julio and Helikar, Tomáš",
    title = "SBML qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools",
    year = "2013",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20140211-103736652",
    id = "https://authors.library.caltech.edu/records/q306x-4ad80",
    issn = "1752-0509",
    doi = "10.1186/1752-0509-7-135",
    volume = "7",
    pmcid = "PMC3892043",
    pages = "Art. No. 135"
}


@other{https://authors.library.caltech.edu/records/3vcy8-2ky03,
    author = "Smith, Lucian P. and Hucka, Michael and Hoops, Stefan and Finney, Andrew and Ginkel, Martin and Myers, Chris J. and Moraru, Ion I. and Liebermeister, Wolfram",
    title = "SBML Level 3 Package Specification:  Hierarchical Model Composition",
    year = "2013",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20141028-180615369",
    id = "https://authors.library.caltech.edu/records/3vcy8-2ky03"
}


@article{https://authors.library.caltech.edu/records/crbkg-gbt24,
    author = "Büchel, Finja and Hucka, Michael",
    title = "Path2Models: large-scale generation of computational models from biochemical pathway maps",
    year = "2013",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20131224-081718618",
    id = "https://authors.library.caltech.edu/records/crbkg-gbt24",
    issn = "1752-0509",
    doi = "10.1186/1752-0509-7-116",
    volume = "7",
    pmcid = "PMC4228421",
    pages = "Art. No. 116"
}


@article{https://authors.library.caltech.edu/records/k7ntb-vh583,
    author = "Thiele, Ines and Hucka, Michael",
    title = "A community-driven global reconstruction of human metabolism",
    year = "2013",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20130625-131443617",
    id = "https://authors.library.caltech.edu/records/k7ntb-vh583",
    issn = "1087-0156",
    doi = "10.1038/nbt.2488",
    volume = "31",
    number = "5",
    pmcid = "PMC3856361",
    pages = "419-425"
}


@other{https://authors.library.caltech.edu/records/cssd4-5aw80,
    author = "Milnes, Brian G. and Pelton, Garrett and Doorenbos, Robert and Hucka, Michael and Laird, John and Rosenbloom, Paul and Newell, Allen",
    title = "A Specification of the Soar Cognitive Architecture in Z",
    year = "2013",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20130115-164654799",
    id = "https://authors.library.caltech.edu/records/cssd4-5aw80"
}


@other{https://authors.library.caltech.edu/records/81bd8-qgx28,
    author = "Hucka, Michael",
    title = "Approximate Spatial Layout Processing in the Visual System:  Modeling Texture-Based Segmentation and Shape Estimation",
    year = "2013",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20130115-163641567",
    id = "https://authors.library.caltech.edu/records/81bd8-qgx28"
}


@other{https://authors.library.caltech.edu/records/6k6jy-1bv97,
    author = "Ritter, Frank E. and Hucka, Michael and McGinnis, Thomas F.",
    title = "Soar-mode v5.0 User's Manual for Soar release 5.2 and 6.0",
    year = "2013",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20130115-165723841",
    id = "https://authors.library.caltech.edu/records/6k6jy-1bv97"
}


@other{https://authors.library.caltech.edu/records/27z7d-sdy83,
    author = "Hucka, Michael and Finney, Andrew and Sauro, Herbert and Bolouri, Hamid",
    title = "Systems Biology Markup Language (SBML) Level 1:  Structures and Facilities for Basic Model Definitions",
    year = "2013",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20130115-163049134",
    id = "https://authors.library.caltech.edu/records/27z7d-sdy83"
}


@other{https://authors.library.caltech.edu/records/hfmyk-j3359,
    author = "Hucka, Michael and Finney, Andrew and Sauro, Herbert and Bolouri, Hamid",
    title = "Systems Biology Markup Language (SBML) Level 1:  Structures and Facilities for Basic Model Definitions",
    year = "2013",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20130115-145744837",
    id = "https://authors.library.caltech.edu/records/hfmyk-j3359"
}


@other{https://authors.library.caltech.edu/records/t4ef1-a0q97,
    author = "Hucka, Michael and Finney, Andrew",
    title = "Systems Biology Markup Language (SBML) Level 2:  Structures and Facilities for Model Definitions",
    year = "2013",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20130115-162450817",
    id = "https://authors.library.caltech.edu/records/t4ef1-a0q97"
}


@other{https://authors.library.caltech.edu/records/qncp2-fkn65,
    author = "Hucka, Michael and Finney, Andrew and Le Novère, Nicolas",
    title = "Systems Biology Markup Language (SBML) Level 2:  Structures and Facilities for Model Definitions",
    year = "2013",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20130111-172633006",
    id = "https://authors.library.caltech.edu/records/qncp2-fkn65"
}


@other{https://authors.library.caltech.edu/records/fmbh1-tbs68,
    author = "Smith, Lucian P. and Hucka, Michael",
    title = "SBML Level 3 Package Specification:  Hierarchical Model Composition, Version 1 Draft",
    year = "2013",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20130108-165049385",
    id = "https://authors.library.caltech.edu/records/fmbh1-tbs68"
}


@article{https://authors.library.caltech.edu/records/g5g5r-s3878,
    author = "Finney, A. and Hucka, M.",
    title = "Systems biology markup language: Level 2 and beyond",
    year = "2012",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20121102-164345599",
    id = "https://authors.library.caltech.edu/records/g5g5r-s3878",
    issn = "1470-8752",
    volume = "31",
    number = "6",
    pages = "1472-1473"
}


@article{https://authors.library.caltech.edu/records/fgaq8-2rm85,
    author = "Waltemath, Dagmar and Adams, Richard and Bergmann, Frank T. and Hucka, Michael and Kolpakov, Fedor and Miller, Andrew K. and Moraru, Ion I. and Nickerson, David and Sahle, Sven and Snoep, Jacky L. and Le Novère, Nicolas",
    title = "Reproducible computational biology experiments with SED-ML - The Simulation Experiment Description Markup Language",
    year = "2011",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20120417-151008602",
    id = "https://authors.library.caltech.edu/records/fgaq8-2rm85",
    issn = "1752-0509",
    doi = "10.1186/1752-0509-5-198",
    volume = "5",
    pmcid = "PMC3292844",
    pages = "Art. No. 198"
}


@book{https://authors.library.caltech.edu/records/6nf3f-w9647,
    author = "Hucka, Michael and Bergmann, Frank T. and Keating, Sarah M. and Smith, Lucian P.",
    title = "A profile of today's SBML-compatible software",
    year = "2011",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20130104-135113975",
    id = "https://authors.library.caltech.edu/records/6nf3f-w9647",
    isbn = "9781467300261",
    doi = "10.1109/eScienceW.2011.28",
    pages = "143-150"
}


@article{https://authors.library.caltech.edu/records/5qyb8-ma020,
    author = "Le Novère, Nicolas and Hucka, Michael and Anwar, Nadia and Bader, Gary D. and Demir, Emek and Moodie, Stuart and Sorokin, Anatoly",
    title = "Meeting report from the first meetings of the Computational Modeling in Biology Network (COMBINE)",
    year = "2011",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20121221-151957383",
    id = "https://authors.library.caltech.edu/records/5qyb8-ma020",
    issn = "1944-3277",
    doi = "10.4056/sigs.2034671",
    volume = "5",
    number = "2",
    pmcid = "PMC3235518"
}


@article{https://authors.library.caltech.edu/records/sdzz2-e8b86,
    author = "Courtot, Mélanie and Hucka, Michael",
    title = "Controlled vocabularies and semantics in systems biology",
    year = "2011",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20111128-111835221",
    id = "https://authors.library.caltech.edu/records/sdzz2-e8b86",
    issn = "1744-4292",
    doi = "10.1038/msb.2011.77",
    volume = "7",
    pmcid = "PMC3261705",
    pages = "Art. No. 543"
}


@article{https://authors.library.caltech.edu/records/hsxv6-2y909,
    author = "Dräger, Andreas and Rodriguez, Nicolas and Dumousseau, Marine and Dörr, Alexander and Wrzodek, Clemens and Le Novère, Nicolas and Zell, Andreas and Hucka, Michael",
    title = "JSBML: a flexible Java library for working with SBML",
    year = "2011",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20110804-100157010",
    id = "https://authors.library.caltech.edu/records/hsxv6-2y909",
    issn = "1367-4803",
    doi = "10.1093/bioinformatics/btr361",
    volume = "27",
    number = "15",
    pmcid = "PMC3137227",
    pages = "2167-2168"
}


@article{https://authors.library.caltech.edu/records/trr42-6hm73,
    author = "Waltemath, Dagmar and Hucka, Michael",
    title = "Minimum Information About a Simulation Experiment (MIASE)",
    year = "2011",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20110525-113431794",
    id = "https://authors.library.caltech.edu/records/trr42-6hm73",
    issn = "1553-734X",
    doi = "10.1371/journal.pcbi.1001122",
    volume = "7",
    number = "4",
    pmcid = "PMC3084216",
    pages = "Art. No. e1001122"
}


@article{https://authors.library.caltech.edu/records/052a5-gcz39,
    author = "Waltemath, Dagmar and Swainston, Neil and Lister, Allyson and Bergmann, Frank and Henkel, Ron and Hoops, Stefan and Hucka, Michael and Juty, Nick and Keating, Sarah and Knuepfer, Christian and Krause, Falko and Laibe, Camille and Liebermeister, Wolfram and Lloyd, Catherine and Misirli, Goksel and Schulz, Marvin and Taschuk, Morgan and Le Novère, Nicolas",
    title = "SBML Level 3 Package Proposal: Annotation",
    year = "2011",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20130108-162112228",
    id = "https://authors.library.caltech.edu/records/052a5-gcz39",
    issn = "1756-0357",
    doi = "10.1038/npre.2011.5610.1"
}


@article{https://authors.library.caltech.edu/records/6c4mr-ec237,
    author = "Hucka, Michael and Bergmann, Frank T. and Hoops, Stefan and Keating, Sarah M. and Sahle, Sven and Schaff, James C. and Smith, Lucian P. and Wilkinson, Darren J.",
    title = "The Systems Biology Markup Language (SBML):  Language Specification for Level 3 Version 1 Core",
    year = "2010",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20130108-170237140",
    id = "https://authors.library.caltech.edu/records/6c4mr-ec237",
    issn = "1756-0357",
    doi = "10.1038/npre.2010.4959.1",
    pages = "Art. No. 4959"
}


@other{https://authors.library.caltech.edu/records/aymy7-8y709,
    author = "Hucka, Michael and Bergmann, Frank T. and Hoops, Stefan and Keating, Sarah M. and Sahle, Sven and Schaff, James C. and Smith, Lucian P. and Wilkinson, Darren J.",
    title = "The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 1 Core",
    year = "2010",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20141028-175133969",
    id = "https://authors.library.caltech.edu/records/aymy7-8y709"
}


@article{https://authors.library.caltech.edu/records/2g97v-aa490,
    author = "Demir, Emek and Hucka, Michael",
    title = "The BioPAX community standard for pathway data sharing",
    year = "2010",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20100929-111828470",
    id = "https://authors.library.caltech.edu/records/2g97v-aa490",
    issn = "1087-0156",
    doi = "10.1038/nbt.1666",
    volume = "28",
    number = "9",
    pmcid = "PMC3001121",
    pages = "935-942"
}


@article{https://authors.library.caltech.edu/records/4w13b-k6d34,
    author = "Li, Chen and Donizelli, Marco and Rodriguez, Nicolas and Dharuri, Harish and Endler, Lukas and Chelliah, Vijayalakshmi and Li, Lu and He, Enuo and Henry, Arnaud and Stefan, Melanie I. and Snoep, Jacky L. and Hucka, Michael and Le Novère, Nicolas and Laibe, Camille",
    title = "BioModels Database: An enhanced, curated and annotated resource for published quantitative kinetic models",
    year = "2010",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20101025-144736877",
    id = "https://authors.library.caltech.edu/records/4w13b-k6d34",
    issn = "1752-0509",
    doi = "10.1186/1752-0509-4-92",
    volume = "4",
    pmcid = "PMC2909940",
    pages = "Art. No. 92"
}


@article{https://authors.library.caltech.edu/records/gqkz7-mbv17,
    author = "Hucka, Michael and Le Novère, Nicolas",
    title = "Software that goes with the flow in systems biology",
    year = "2010",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20101208-082834918",
    id = "https://authors.library.caltech.edu/records/gqkz7-mbv17",
    issn = "1741-7007",
    doi = "10.1186/1741-7007-8-140",
    volume = "8",
    pmcid = "PMC2993668",
    pages = "140-142"
}


@article{https://authors.library.caltech.edu/records/a2jed-2c961,
    author = "Le Novère, Nicolas and Hucka, Michael and Mi, Huaiyu and Moodie, Stuart and Schreiber, Falk and Sorokin, Anatoly and Demir, Emek and Wegner, Katja and Aladjem, Mirit I. and Wimalaratne, Sarala M. and Bergman, Frank T. and Gauges, Ralph and Ghazal, Peter and Kawaji, Hideya and Li, Lu and Matsuoka, Yukiko and Villéger, Alice and Boyd, Sarah E. and Calzone, Laurence and Courtot, Melanie and Dogrusoz, Ugur and Freeman, Tom C. and Funahashi, Akira and Ghosh, Samik and Jouraku, Akiya and Kim, Sohyoung and Kolpakov, Fedor and Luna, Augustin and Sahle, Sven and Schmidt, Esther and Watterson, Steven and Wu, Guanming and Goryanin, Igor and Kell, Douglas B. and Sander, Chris and Sauro, Herbert and Snoep, Jacky L. and Kohn, Kurt and Kitano, Hiroaki",
    title = "The Systems Biology Graphical Notation",
    year = "2009",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20090826-112850998",
    id = "https://authors.library.caltech.edu/records/a2jed-2c961",
    issn = "1087-0156",
    doi = "10.1038/nbt.1558",
    volume = "27",
    number = "8",
    pages = "735-741"
}


@article{https://authors.library.caltech.edu/records/3kt0p-52j59,
    author = "Dräger, Andreas and Planatscher, Hannes and Wouamba, Dieudonné Motsou and Schröder, Adrian and Hucka, Michael and Endler, Lukas and Golebiewski, Martin and Müller, Wolfgang and Zell, Andreas",
    title = "SBML2LATEX: Conversion of SBML files into human-readable reports",
    year = "2009",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20090821-103810499",
    id = "https://authors.library.caltech.edu/records/3kt0p-52j59",
    issn = "1367-4803",
    doi = "10.1093/bioinformatics/btp170",
    volume = "25",
    number = "11",
    pmcid = "PMC2682517",
    pages = "1455-1456"
}


@article{https://authors.library.caltech.edu/records/tj3qh-ss715,
    author = "Hucka, Michael",
    title = "An overview of several standardization efforts for systems biology",
    year = "2009",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20121024-180733852",
    id = "https://authors.library.caltech.edu/records/tj3qh-ss715",
    issn = "1880-6546",
    volume = "59",
    number = "S1",
    pages = "102-102"
}


@book{https://authors.library.caltech.edu/records/vpz5f-3jq53,
    author = "Hucka, Michael and Schaff, James",
    title = "Trends and Tools for Modeling in Modern Biology",
    year = "2009",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20130107-153635162",
    id = "https://authors.library.caltech.edu/records/vpz5f-3jq53",
    isbn = "978-1-4020-9236-7",
    doi = "10.1007/978-1-4020-9237-4\_1",
    pages = "3-15"
}


@article{https://authors.library.caltech.edu/records/w8330-xf943,
    author = "Hucka, Michael and Hoops, Stefan and Keating, Sarah M. and Le Novère, Nicolas and Sahle, Sven and Wilkinson, Darren J.",
    title = "Systems Biology Markup Language (SBML) Level 2: Structures and Facilities for Model Definitions",
    year = "2008",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20130111-154935747",
    id = "https://authors.library.caltech.edu/records/w8330-xf943",
    issn = "1756-0357",
    doi = "10.1038/npre.2008.2715.1"
}


@article{https://authors.library.caltech.edu/records/kgen8-g5m27,
    author = "Herrgård, Markus J. and Swainston, Neil and Dobson, Paul and Dunn, Warwick B. and Arga, K. Yalçin and Arvas, Mikko and Büthgen, Nils and Borger, Simon and Costenoble, Roeland and Heinemann, Matthias and Hucka, Michael and Le Novère, Nicolas and Li, Peter and Liebermeister, Wolfram and Mo, Monica L. and Oliveira, Ana Paula and Petranovic, Dina and Pettifer, Stephen and Simeonidis, Evangelos and Smallbone, Kieran and Spasié, Irena and Weichart, Dieter and Brent, Roger and Broomhead, David S. and Westerhoff, Hans V. and Kürdar, Betül and Penttilä, Merja and Klipp, Edda and Palsson, Bernhard Ø. and Sauer, Uwe and Oliver, Stephen G. and Mendes, Pedro and Nielsen, Jens and Kell, Douglas B.",
    title = "A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology",
    year = "2008",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20090430-074605876",
    id = "https://authors.library.caltech.edu/records/kgen8-g5m27",
    issn = "1087-0156",
    doi = "10.1038/nbt1492",
    volume = "26",
    number = "10",
    pmcid = "PMC4018421",
    pages = "1155-1160"
}


@article{https://authors.library.caltech.edu/records/2eefc-h0h24,
    author = "Le Novère, Nicolas and Moodie, Stuart and Sorokin, Anatoly and Hucka, Michael and Schreiber, Falk and Demir, Emek and Mi, Huaiyu and Matsuoka, Yukiko and Wegner, Katja and Kitano, Hiroaki",
    title = "Systems Biology Graphical Notation: Process Diagram Level 1",
    year = "2008",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20130110-104912003",
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    issn = "1756-0357"
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    author = "Bornstein, Benjamin J. and Keating, Sarah M. and Jouraku, Akiya and Hucka, Michael",
    title = "LibSBML:  an API library for SBML",
    year = "2008",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20121025-171520224",
    id = "https://authors.library.caltech.edu/records/bt5z9-0wa74",
    issn = "1367-4803",
    doi = "10.1093/bioinformatics/btn051",
    volume = "24",
    number = "6",
    pmcid = "PMC2517632",
    pages = "880-881"
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    author = "Hucka, Michael and Finney, Andrew M. and Hoops, Stefan and Keating, Sarah M. and Le Novère, Nicolas",
    title = "Systems Biology Markup Language (SBML) Level 2: Structures and Facilities for Model Definitions",
    year = "2007",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20130111-164005593",
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    author = "Hucka, Michael and Keating, Sarah",
    title = "A tutorial about SBML and SBML Level 2 Version 2",
    year = "2007",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20101112-100023782",
    id = "https://authors.library.caltech.edu/records/9pxrv-pcr61",
    issn = "1756-0357",
    doi = "10.1038/npre.2007.19.1"
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    author = "Hucka, Michael",
    title = "Evolving standards and infrastructure for systems biology: SBML, SBGN, and BioModels.net",
    year = "2007",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20101112-095724862",
    id = "https://authors.library.caltech.edu/records/yx1xk-89s81",
    issn = "1756-0357",
    doi = "10.1038/npre.2007.20.1"
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    author = "Hucka, Michael",
    title = "SBML, BioModels.net, and SBGN",
    year = "2007",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20101112-095815264",
    id = "https://authors.library.caltech.edu/records/t34k7-1d570",
    issn = "1756-0357",
    doi = "10.1038/npre.2007.20.1"
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    author = "Shapiro, Bruce E. and Finney, Andrew and Hucka, Michael and Bornstein, Benjamin and Funahashi, Akira and Jouraku, Akiya and Keating, Sarah M. and Le Novère, Nicolas and Matthews, Joanne and Schilstra, Maria J.",
    title = "SBML Models and MathSBML",
    year = "2007",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20130107-155707023",
    id = "https://authors.library.caltech.edu/records/zgtdr-0kf50",
    isbn = "9781597455312",
    pages = "395-421"
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    author = "Sauro, Herbert M. and Uhrmacher, Adelinde M. and Harel, David and Hucka, Michael and Kwiatkowska, Martha and Mendes, Pedro and Shaffer, Clifford A. and Strömback, Lena and Tyson, John J.",
    title = "Challenges for Modeling and Simulation Methods in Systems Biology",
    year = "2006",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20130104-155630506",
    id = "https://authors.library.caltech.edu/records/4qhyw-zvm83",
    isbn = "1-4244-0500-9",
    doi = "10.1109/WSC.2006.322948",
    pages = "1720-1730"
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    author = "Hlavacek, William S. and Faeder, James R. and Blinov, Michael L. and Posner, Richard G. and Hucka, Michael and Fontana, Walter",
    title = "Rules for Modeling Signal-Transduction Systems",
    year = "2006",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20121026-104604268",
    id = "https://authors.library.caltech.edu/records/jxmab-t4e22",
    issn = "1525-8882",
    doi = "10.1126/stke.3442006re6",
    volume = "2006",
    number = "344",
    pages = "re6"
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@article{https://authors.library.caltech.edu/records/qh6jd-6n577,
    author = "Keating, Sarah M. and Bornstein, Benjamin J. and Finney, Andrew and Hucka, Michael",
    title = "SBMLToolbox: an SBML toolbox for MATLAB users",
    year = "2006",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:KEAbioinf06",
    id = "https://authors.library.caltech.edu/records/qh6jd-6n577",
    issn = "1367-4803",
    doi = "10.1093/bioinformatics/btl111",
    volume = "22",
    number = "10",
    pages = "1275-1277"
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@article{https://authors.library.caltech.edu/records/64444-nz480,
    author = "Schilstra, Maria J. and Li, Lu and Matthews, Joanne and Finney, Andrew and Hucka, Michael and Le Novère, Nicolas",
    title = "CellML2SBML: conversion of CellML into SBML",
    year = "2006",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20110727-113447666",
    id = "https://authors.library.caltech.edu/records/64444-nz480",
    issn = "1367-4803",
    doi = "10.1093/bioinformatics/btl047",
    volume = "22",
    number = "8",
    pages = "1018-1020"
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@article{https://authors.library.caltech.edu/records/41km5-jhj15,
    author = "Le Novère, Nicolas and Bornstein, Benjamin and Broicher, Alexander and Courtot, Mélanie and Donizelli, Marco and Dharuri, Harish and Li, Lu and Sauro, Herbert and Schilstra, Maria and Shapiro, Bruce and Snoep, Jacky L. and Hucka, Michael",
    title = "BioModels Database: a free, centralized database of curated, published, quantitative kinetic models of biochemical and cellular systems",
    year = "2006",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:LENnar06",
    id = "https://authors.library.caltech.edu/records/41km5-jhj15",
    issn = "0305-1048",
    doi = "10.1093/nar/gkj092",
    volume = "34",
    number = "Databa",
    pmcid = "PMC1347454",
    pages = "D689-D691"
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@book{https://authors.library.caltech.edu/records/a5xc6-3sw58,
    author = "Finney, Andrew and Hucka, Michael and Bornstein, Benjamin J. and Keating, Sarah M. and Shapiro, Bruce E. and Matthews, Joanne and Kovitz, Ben L. and Schilstra, Maria J. and Funahashi, Akira and Doyle, John and Kitano, Hiroaki",
    title = "Software Infrastructure for Effective Communication and Reuse of Computational Models",
    year = "2006",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20130107-161648673",
    id = "https://authors.library.caltech.edu/records/a5xc6-3sw58",
    isbn = "9780262195485",
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@article{https://authors.library.caltech.edu/records/7wyph-sr926,
    author = "Le Novère, Nicolas and Finney, Andrew and Hucka, Michael and Bhalla, Upinder S. and Campagne, Fabien and Collado-Vides, Julio and Crampin, Edmund J. and Halstead, Matt and Klipp, Edda and Mendes, Pedro and Nielsen, Poul and Sauro, Herbert and Shapiro, Bruce and Snoep, Jacky L. and Spence, Hugh D. and Wanner, Barry L.",
    title = "Minimum information requested in the annotation of biochemical models (MIRIAM)",
    year = "2005",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20121026-181128448",
    id = "https://authors.library.caltech.edu/records/7wyph-sr926",
    issn = "1087-0156",
    doi = "10.1038/nbt1156",
    volume = "23",
    number = "12",
    pages = "1509-1515"
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@article{https://authors.library.caltech.edu/records/kfeep-nxq19,
    author = "Hucka, Michael and Finney, Andrew",
    title = "Escalating model sizes and complexities call for standardized forms of representation",
    year = "2005",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20121026-182306063",
    id = "https://authors.library.caltech.edu/records/kfeep-nxq19",
    issn = "1744-4292",
    doi = "10.1038/msb4100015",
    volume = "1",
    pmcid = "PMC1360139",
    pages = "Art. No. 2005.0011"
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    author = "Wanner, Barry L. and Finney, Andrew and Hucka, Michael",
    title = "Modeling the E. coli cell: The need for computing, cooperation, and consortia",
    year = "2005",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20130107-172005097",
    id = "https://authors.library.caltech.edu/records/kmsp1-15m82",
    isbn = "978-3-540-22968-1",
    doi = "10.1007/b138743",
    pages = "163-189"
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@article{https://authors.library.caltech.edu/records/5z4xz-6zt67,
    author = "Shapiro, Bruce E. and Hucka, Michael and Finney, Andrew and Doyle, John",
    title = "MathSBML: a package for manipulating SBML-based biological models",
    year = "2004",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20111004-150808819",
    id = "https://authors.library.caltech.edu/records/5z4xz-6zt67",
    issn = "1367-4803",
    doi = "10.1093/bioinformatics/bth271",
    volume = "20",
    number = "16",
    pmcid = "PMC1409765",
    pages = "2829-2831"
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@article{https://authors.library.caltech.edu/records/899kp-y7h26,
    author = "Hucka, M. and Finney, A. and Bornstein, B. J. and Keating, S. M. and Shapiro, B. E. and Matthews, J. and Kovitz, B. L. and Schilstra, M. J. and Funahashi, A. and Doyle, J. C. and Kitano, H.",
    title = "Evolving a lingua franca and associated software infrastructure for computational systems biology: the Systems Biology Markup Language (SBML) project",
    year = "2004",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:HUCieesb04",
    id = "https://authors.library.caltech.edu/records/899kp-y7h26",
    issn = "1741-2471",
    doi = "10.1049/sb:20045008",
    volume = "1",
    number = "1",
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    author = "Sauro, Herbert M. and Hucka, Michael and Finney, Andrew and Wellock, Cameron and Bolouri, Hamid and Doyle, John and Kitano, Hiroaki",
    title = "Next Generation Simulation Tools: The Systems Biology Workbench and BioSPICE Integration",
    year = "2003",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20121026-183338290",
    id = "https://authors.library.caltech.edu/records/2d8j1-ch123",
    issn = "1536-2310",
    doi = "10.1089/153623103322637670",
    volume = "7",
    number = "4",
    pages = "355-372"
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    author = "Hucka, M. and Finney, A. and Sauro, H. M. and Bolouri, H. and Doyle, J. C. and Kitano, H.",
    title = "The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models",
    year = "2003",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20111020-083352718",
    id = "https://authors.library.caltech.edu/records/59sc4-qac38",
    issn = "1367-4803",
    doi = "10.1093/bioinformatics/btg015",
    volume = "19",
    number = "4",
    pages = "524-531"
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    author = "Bower, James M. and Beeman, David and Hucka, Michael",
    title = "The GENESIS Simulation System",
    year = "2003",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20130107-174057868",
    id = "https://authors.library.caltech.edu/records/d1nay-9yz85",
    isbn = "9780262267267",
    pages = "475-478"
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    author = "Goddard, N. H. and Beeman, D. and Cannon, R. and Cornelis, H. and Gewaltig, M.-O. and Hood, G. and Howell, F. and Rogister, P. and De Schutter, E. and Shankar, K. and Hucka, M.",
    title = "NeuroML for plug and play neuronal modeling",
    year = "2002",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20121220-180227156",
    id = "https://authors.library.caltech.edu/records/f38m3-8rg87",
    issn = "0925-2312",
    doi = "10.1016/S0925-2312(02)00420-4",
    volume = "44-46",
    pages = "1077-1081"
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    author = "Hucka, Michael and Finney, Andrew and Sauro, Herbert M. and Bolouri, Hamid and Doyle, John C. and Kitano, Hiroaki",
    title = "The ERATO Systems Biology Workbench:  Enabling Interaction and Exchange Between Software Tools for Computational Biology",
    year = "2002",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20130108-142104885",
    id = "https://authors.library.caltech.edu/records/9a7nq-dd934",
    isbn = "9789812799623",
    pages = "450-461"
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    author = "Hucka, Michael and Shankar, Kavita and Beeman, David and Bower, James M.",
    title = "The Modeler's Workspace:  Making model-based studies of the nervous system more accessible",
    year = "2002",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20130107-174458859",
    id = "https://authors.library.caltech.edu/records/9jt9j-c8b35",
    isbn = "9781588290007",
    pages = "83-103"
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    author = "Hucka, Michael and Finney, Andrew and Sauro, Herbert and Bolouri, Hamid and Doyle, John and Kitano, Hiroaki",
    title = "The ERATO Systems Biology Workbench:  Architectural Evolution",
    year = "2001",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20130104-163929932",
    id = "https://authors.library.caltech.edu/records/fvrb6-pnj25",
    isbn = "9781591350002",
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    author = "Goddard, Nigel H. and Hucka, Michael and Howell, Fred and Cornelis, Hugo and Shankar, Kavita and Beeman, David",
    title = "Towards NeuroML: Model Description Methods for Collaborative Modelling in Neuroscience",
    year = "2001",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20121220-181928125",
    id = "https://authors.library.caltech.edu/records/xj0kx-av747",
    issn = "0962-8436",
    doi = "10.1098/rstb.2001.0910",
    volume = "356",
    number = "1412",
    pmcid = "PMC1088511",
    pages = "1209-1228"
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    author = "Finney, Andrew M. and Hucka, Michael and Sauro, Herbert M. and Bolouri, Hamid and Doyle, John and Kitano, Hiroaki",
    title = "An Overview of the ERATO Systems Biology Workbench Project",
    year = "2001",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20130107-141403406",
    id = "https://authors.library.caltech.edu/records/sms8z-2gt43",
    isbn = "9783897226487",
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    author = "Hucka, Michael and Finney, Andrew and Sauro, Herbert and Bolouri, Hamid and Doyle, John and Kitano, Hiroaki",
    title = "The ERATO Systems Biology Workbench:  An Integrated Environment for Multiscale and Multitheoretic Simulations in Systems Biology",
    year = "2001",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20130108-145620726",
    id = "https://authors.library.caltech.edu/records/kz2qx-q2140",
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@article{https://authors.library.caltech.edu/records/ck4gv-zkb09,
    author = "Hucka, Michael and Forss, Jenny and Emardson, Sara and Shankar, Kavita and Beeman, David and Bower, James",
    title = "The Modeler's Workspace:  Making model-based studies of the nervous system more accessible",
    year = "2000",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20121221-140331214",
    id = "https://authors.library.caltech.edu/records/ck4gv-zkb09",
    issn = "0892-6638",
    volume = "14",
    pages = "Art. No. A543"
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    author = "Hucka, Michael and Kaplan, Stephen",
    title = "Approximate Spatial Layout Processing in Early Vision",
    year = "1996",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20130107-145221449",
    id = "https://authors.library.caltech.edu/records/19epa-hw331",
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    author = "Hucka, Michael and Kaplan, Stephen",
    title = "Texture-Based Processing in Early Vision and a Proposed Role for Coarse-Scale Segmentation",
    year = "1996",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20130107-142459100",
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    author = "Hucka, Michael and Weaver, Mark and Kaplan, Stephen",
    title = "Hebb's Accomplishments Misunderstood",
    year = "1995",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20121221-142418426",
    id = "https://authors.library.caltech.edu/records/xqaxk-0z052",
    issn = "0140-525X",
    doi = "10.1017/S0140525X00040267",
    volume = "18",
    number = "04",
    pages = "635-636"
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@book{https://authors.library.caltech.edu/records/p995r-tjt25,
    author = "Laird, John E. and Yager, Eric S. and Hucka, Michael and Tuck, Christopher M.",
    title = "Robo-Soar: An Integration of External Interaction, Planning, and Learning using Soar",
    year = "1993",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20130108-153038803",
    id = "https://authors.library.caltech.edu/records/p995r-tjt25",
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@article{https://authors.library.caltech.edu/records/b13mz-cj156,
    author = "Laird, John E. and Yager, Eric S. and Hucka, Michael and Tuck, Christopher M.",
    title = "Robo-Soar:  An integration of external interaction, planning, and learning using Soar",
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    issn = "0921-8890",
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    number = "1-2",
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    author = "Laird, John and Hucka, Mike and Huffman, Scott and Rosenbloom, Paul",
    title = "An analysis of Soar as an integrated architecture",
    year = "1991",
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    issn = "0163-5719",
    doi = "10.1145/122344.122364",
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    number = "4",
    pages = "98-103"
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    year = "1990",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20130107-145622631",
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    author = "Laird, John E. and Yager, Eric S. and Tuck, Christopher M. and Hucka, Michael",
    title = "Learning in Tele-autonomous Systems using Soar",
    year = "1989",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20130107-150307467",
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