@book{https://authors.library.caltech.edu/records/nrvt9-xae73, author = "Stanford, Natalie J. and Scharm, Martin and Dobson, Paul D. and Golebiewski, Martin and Hucka, Michael and Kothamachu, Varun B. and Nickerson, David and Owen, Stuart and Pahle, Jürgen and Wittig, Ulrike and Waltemath, Dagmar and Goble, Carole and Mendes, Pedro and Snoep, Jacky", title = "Data Management in Computational Systems Biology: Exploring Standards, Tools, Databases, and Packaging Best Practices", year = "2019", url = "https://resolver.caltech.edu/CaltechAUTHORS:20191014-145835970", id = "https://authors.library.caltech.edu/records/nrvt9-xae73", isbn = "978-1-4939-9735-0", doi = "10.1007/978-1-4939-9736-7\_17", pages = "285-314" } @book{https://authors.library.caltech.edu/records/9yj6a-wqs70, author = "Myers, Chris J. and Bader, Gary and Gleeson, Padraig and Golebiewski, Martin and Hucka, Michael and Le Novère, Nicolas and Nickerson, David P. and Schreiber, Falk and Waltemath, Dagmar", title = "A brief history of COMBINE", year = "2017", url = "https://resolver.caltech.edu/CaltechAUTHORS:20180516-143900255", id = "https://authors.library.caltech.edu/records/9yj6a-wqs70", isbn = "978-1-5386-3428-8", doi = "10.1109/WSC.2017.8247840", pages = "884-895" } @book{https://authors.library.caltech.edu/records/3scnp-edy42, author = "Hucka, Michael", title = "Systems Biology Markup Language (SBML)", year = "2015", url = "https://resolver.caltech.edu/CaltechAUTHORS:20170616-153355069", id = "https://authors.library.caltech.edu/records/3scnp-edy42", isbn = "978-1-4614-6674-1", doi = "10.1007/978-1-4614-6675-8\_376", pages = "2943-2944" } @book{https://authors.library.caltech.edu/records/jtmc8-kqq83, author = "Hucka, Michael", title = "Organizing Community-Based Data Standards: Lessons from Developing a Successful Open Standard in Systems Biology", year = "2015", url = "https://resolver.caltech.edu/CaltechAUTHORS:20160325-091121555", id = "https://authors.library.caltech.edu/records/jtmc8-kqq83", isbn = "9781583818749", pages = "575-578" } @book{https://authors.library.caltech.edu/records/6nf3f-w9647, author = "Hucka, Michael and Bergmann, Frank T. and Keating, Sarah M. and Smith, Lucian P.", title = "A profile of today's SBML-compatible software", year = "2011", url = "https://resolver.caltech.edu/CaltechAUTHORS:20130104-135113975", id = "https://authors.library.caltech.edu/records/6nf3f-w9647", isbn = "9781467300261", doi = "10.1109/eScienceW.2011.28", pages = "143-150" } @book{https://authors.library.caltech.edu/records/vpz5f-3jq53, author = "Hucka, Michael and Schaff, James", title = "Trends and Tools for Modeling in Modern Biology", year = "2009", url = "https://resolver.caltech.edu/CaltechAUTHORS:20130107-153635162", id = "https://authors.library.caltech.edu/records/vpz5f-3jq53", isbn = "978-1-4020-9236-7", doi = "10.1007/978-1-4020-9237-4\_1", pages = "3-15" } @book{https://authors.library.caltech.edu/records/zgtdr-0kf50, author = "Shapiro, Bruce E. and Finney, Andrew and Hucka, Michael and Bornstein, Benjamin and Funahashi, Akira and Jouraku, Akiya and Keating, Sarah M. and Le Novère, Nicolas and Matthews, Joanne and Schilstra, Maria J.", title = "SBML Models and MathSBML", year = "2007", url = "https://resolver.caltech.edu/CaltechAUTHORS:20130107-155707023", id = "https://authors.library.caltech.edu/records/zgtdr-0kf50", isbn = "9781597455312", pages = "395-421" } @book{https://authors.library.caltech.edu/records/4qhyw-zvm83, author = "Sauro, Herbert M. and Uhrmacher, Adelinde M. and Harel, David and Hucka, Michael and Kwiatkowska, Martha and Mendes, Pedro and Shaffer, Clifford A. and Strömback, Lena and Tyson, John J.", title = "Challenges for Modeling and Simulation Methods in Systems Biology", year = "2006", url = "https://resolver.caltech.edu/CaltechAUTHORS:20130104-155630506", id = "https://authors.library.caltech.edu/records/4qhyw-zvm83", isbn = "1-4244-0500-9", doi = "10.1109/WSC.2006.322948", pages = "1720-1730" } @book{https://authors.library.caltech.edu/records/a5xc6-3sw58, author = "Finney, Andrew and Hucka, Michael and Bornstein, Benjamin J. and Keating, Sarah M. and Shapiro, Bruce E. and Matthews, Joanne and Kovitz, Ben L. and Schilstra, Maria J. and Funahashi, Akira and Doyle, John and Kitano, Hiroaki", title = "Software Infrastructure for Effective Communication and Reuse of Computational Models", year = "2006", url = "https://resolver.caltech.edu/CaltechAUTHORS:20130107-161648673", id = "https://authors.library.caltech.edu/records/a5xc6-3sw58", isbn = "9780262195485", pages = "355-378" } @book{https://authors.library.caltech.edu/records/kmsp1-15m82, author = "Wanner, Barry L. and Finney, Andrew and Hucka, Michael", title = "Modeling the E. coli cell: The need for computing, cooperation, and consortia", year = "2005", url = "https://resolver.caltech.edu/CaltechAUTHORS:20130107-172005097", id = "https://authors.library.caltech.edu/records/kmsp1-15m82", isbn = "978-3-540-22968-1", doi = "10.1007/b138743", pages = "163-189" } @book{https://authors.library.caltech.edu/records/d1nay-9yz85, author = "Bower, James M. and Beeman, David and Hucka, Michael", title = "The GENESIS Simulation System", year = "2003", url = "https://resolver.caltech.edu/CaltechAUTHORS:20130107-174057868", id = "https://authors.library.caltech.edu/records/d1nay-9yz85", isbn = "9780262267267", pages = "475-478" } @book{https://authors.library.caltech.edu/records/9a7nq-dd934, author = "Hucka, Michael and Finney, Andrew and Sauro, Herbert M. and Bolouri, Hamid and Doyle, John C. and Kitano, Hiroaki", title = "The ERATO Systems Biology Workbench: Enabling Interaction and Exchange Between Software Tools for Computational Biology", year = "2002", url = "https://resolver.caltech.edu/CaltechAUTHORS:20130108-142104885", id = "https://authors.library.caltech.edu/records/9a7nq-dd934", isbn = "9789812799623", pages = "450-461" } @book{https://authors.library.caltech.edu/records/9jt9j-c8b35, author = "Hucka, Michael and Shankar, Kavita and Beeman, David and Bower, James M.", title = "The Modeler's Workspace: Making model-based studies of the nervous system more accessible", year = "2002", url = "https://resolver.caltech.edu/CaltechAUTHORS:20130107-174458859", id = "https://authors.library.caltech.edu/records/9jt9j-c8b35", isbn = "9781588290007", pages = "83-103" } @book{https://authors.library.caltech.edu/records/fvrb6-pnj25, author = "Hucka, Michael and Finney, Andrew and Sauro, Herbert and Bolouri, Hamid and Doyle, John and Kitano, Hiroaki", title = "The ERATO Systems Biology Workbench: Architectural Evolution", year = "2001", url = "https://resolver.caltech.edu/CaltechAUTHORS:20130104-163929932", id = "https://authors.library.caltech.edu/records/fvrb6-pnj25", isbn = "9781591350002", pages = "352-361" } @book{https://authors.library.caltech.edu/records/sms8z-2gt43, author = "Finney, Andrew M. and Hucka, Michael and Sauro, Herbert M. and Bolouri, Hamid and Doyle, John and Kitano, Hiroaki", title = "An Overview of the ERATO Systems Biology Workbench Project", year = "2001", url = "https://resolver.caltech.edu/CaltechAUTHORS:20130107-141403406", id = "https://authors.library.caltech.edu/records/sms8z-2gt43", isbn = "9783897226487", pages = "115-122" } @book{https://authors.library.caltech.edu/records/kz2qx-q2140, author = "Hucka, Michael and Finney, Andrew and Sauro, Herbert and Bolouri, Hamid and Doyle, John and Kitano, Hiroaki", title = "The ERATO Systems Biology Workbench: An Integrated Environment for Multiscale and Multitheoretic Simulations in Systems Biology", year = "2001", url = "https://resolver.caltech.edu/CaltechAUTHORS:20130108-145620726", id = "https://authors.library.caltech.edu/records/kz2qx-q2140", isbn = "978-0262112666", pages = "125-143" } @book{https://authors.library.caltech.edu/records/19epa-hw331, author = "Hucka, Michael and Kaplan, Stephen", title = "Approximate Spatial Layout Processing in Early Vision", year = "1996", url = "https://resolver.caltech.edu/CaltechAUTHORS:20130107-145221449", id = "https://authors.library.caltech.edu/records/19epa-hw331", isbn = "978-0805825411" } @book{https://authors.library.caltech.edu/records/chq18-j3c03, author = "Hucka, Michael and Kaplan, Stephen", title = "Texture-Based Processing in Early Vision and a Proposed Role for Coarse-Scale Segmentation", year = "1996", url = "https://resolver.caltech.edu/CaltechAUTHORS:20130107-142459100", id = "https://authors.library.caltech.edu/records/chq18-j3c03" } @book{https://authors.library.caltech.edu/records/p995r-tjt25, author = "Laird, John E. and Yager, Eric S. and Hucka, Michael and Tuck, Christopher M.", title = "Robo-Soar: An Integration of External Interaction, Planning, and Learning using Soar", year = "1993", url = "https://resolver.caltech.edu/CaltechAUTHORS:20130108-153038803", id = "https://authors.library.caltech.edu/records/p995r-tjt25", isbn = "9780262720175", pages = "113-129" } @book{https://authors.library.caltech.edu/records/ff618-7h090, author = "Laird, John E. and Hucka, Michael and Yager, Eric S. and Tuck, Christopher M.", title = "Correcting and extending domain knowledge using outside guidance", year = "1990", url = "https://resolver.caltech.edu/CaltechAUTHORS:20130107-145622631", id = "https://authors.library.caltech.edu/records/ff618-7h090", isbn = "9781558601413", pages = "235-243" } @book{https://authors.library.caltech.edu/records/avttw-4rm17, author = "Laird, John E. and Yager, Eric S. and Tuck, Christopher M. and Hucka, Michael", title = "Learning in Tele-autonomous Systems using Soar", year = "1989", url = "https://resolver.caltech.edu/CaltechAUTHORS:20130107-150307467", id = "https://authors.library.caltech.edu/records/avttw-4rm17" }