from CaltechAUTHORS

• Nag, Arundhati; Mafi, Amirhossein; et el. (2023) Stereochemical engineering yields a multifunctional peptide macrocycle inhibitor of Akt2 by fine-tuning macrocycle-cell membrane interactions; Communications Chemistry; Vol. 6; Art. No. 95; PMCID PMC10195864; 10.1038/s42004-023-00890-w
• Chour, William; Choi, Jongchan; et el. (2023) Large libraries of single-chain trimer peptide-MHCs enable antigen-specific CD8+ T cell discovery and analysis; Communications Biology; Vol. 6; Art. No. 528; PMCID PMC10186326; 10.1038/s42003-023-04899-8
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• Nesterenko, Pavlo A.; McLaughlin, Jami; et el. (2021) HLA-A∗02:01 restricted T cell receptors against the highly conserved SARS-CoV-2 polymerase cross-react with human coronaviruses; Cell Reports; Vol. 37; No. 13; Art. No. 110167; PMCID PMC8660260; 10.1016/j.celrep.2021.110167
• Jiang, Yonghou; Duffy, Fergal; et el. (2021) Angiotensin II receptor I auto-antibodies following SARS-CoV-2 infection; PLoS ONE; Vol. 16; No. 11; Art. No. e0259902; PMCID PMC8598062; 10.1371/journal.pone.0259902
• Lee, Dongkwan; Du, Jiajun; et el. (2020) Visualizing Subcellular Enrichment of Glycogen in Live Cancer Cells by Stimulated Raman Scattering; Analytical Chemistry; Vol. 92; No. 19; 13182-13191; 10.1021/acs.analchem.0c02348
• Du, Jiajun; Su, Yapeng; et el. (2020) Raman-guided subcellular pharmaco-metabolomics for metastatic melanoma cells; Nature Communications; Vol. 11; Art. No. 4830; PMCID PMC7518429; 10.1038/s41467-020-18376-x
• Wells, Daniel K.; Dang, Kristen K.; et el. (2020) Strategies to improve the sensitivity and ranking ability of neoantigen prediction methods: Report on the results of the Tumor nEoantigen SeLection Alliance (TESLA); Cancer Research; Vol. 80; No. 16; Art. No. 3210; 10.1158/1538-7445.am2020-3210
• Su, Yapeng; Li, Guideng; et el. (2020) Systems biology for investigating drug resistance mechanism of melanoma; Cancer Research; Vol. 80; No. 16; Art. No. 6585; 10.1158/1538-7445.am2020-6585
• Su, Yapeng; Ko, Melissa E.; et el. (2020) Multi-omic single-cell snapshots reveal multiple independent trajectories to drug tolerance in a melanoma cell line; Nature Communications; Vol. 11; Art. No. 2345; PMCID PMC7214418; 10.1038/s41467-020-15956-9
• Lu, Yue; Yoo, Byung-Kuk; et el. (2019) 4D electron microscopy of T cell activation; Proceedings of the National Academy of Sciences of the United States of America; Vol. 116; No. 44; 22014-22019; PMCID PMC6825259; 10.1073/pnas.1914078116
• Ng, Alphonsus H. C.; Peng, Songming; et el. (2019) MATE-Seq: Microfluidic Antigen-TCR Engagement Sequencing; Lab on a Chip; Vol. 19; No. 18; 3011-3021; 10.1039/c9lc00538b
• Peng, Songming; Zaretsky, Jesse M.; et el. (2019) Sensitive Detection and Analysis of Neoantigen-Specific T Cell Populations from Tumors and Blood; Cell Reports; Vol. 28; No. 10; 2728-2738; PMCID PMC6774618; 10.1016/j.celrep.2019.07.106
• Liang, JingXin; Bunck, David N.; et el. (2019) Inhibition of heme sequestration of histidine-rich protein 2 using multiple epitope-targeted peptides; Journal of Peptide Science; Vol. 25; No. 9; Art. No. e3203; 10.1002/psc.3203
• Su, Yapeng; Bintz, Marcus; et el. (2019) Phenotypic heterogeneity and evolution of melanoma cells associated with targeted therapy resistance; PLOS Computational Biology; Vol. 15; No. 6; Art. No. e1007034; PMCID PMC6576794; 10.1371/journal.pcbi.1007034
• Joglekar, Alok V.; Leonard, Michael T.; et el. (2019) T cell antigen discovery via signaling and antigen-presenting bifunctional receptors; Nature Methods; Vol. 16; No. 2; 191-198; PMCID PMC6755906; 10.1038/s41592-018-0304-8
• Li, Guideng; Bethune, Michael T.; et el. (2019) T cell antigen discovery via trogocytosis; Nature Methods; Vol. 16; No. 2; 183-190; PMCID PMC6719556; 10.1038/s41592-018-0305-7
• Xu, Alexander M.; Liu, Qianhe; et el. (2018) Integrated measurement of intracellular proteins and transcripts in single cells; Lab on a Chip; Vol. 18; No. 21; 3251-3262; PMCID PMC6752714; 10.1039/c8lc00639c
• Rossi, John; Paczkowski, Patrick; et el. (2018) Preinfusion polyfunctional anti-CD19 chimeric antigen receptor T cells associate with clinical outcomes in NHL; Blood; Vol. 132; No. 8; 804-814; PMCID PMC6107882; 10.1182/blood-2018-01-828343
• McCarthy, Amy Michelle; Kim, Jungwoo; et el. (2018) An Allosteric Inhibitor of KRas Identified Using a Barcoded Rapid Assay Microchip Platform; Analytical Chemistry; Vol. 90; No. 15; 8824-8830; PMCID PMC6734936; 10.1021/acs.analchem.8b00706
• Sibener, Leah V.; Fernandes, Ricardo A.; et el. (2018) Isolation of a Structural Mechanism for Uncoupling T Cell Receptor Signaling from Peptide-MHC Binding; Cell; Vol. 174; No. 3; 672-687; PMCID PMC6140336; 10.1016/j.cell.2018.06.017
• Bunck, David N.; Atsavapranee, Beatriz; et el. (2018) Modulating the Folding Landscape of Superoxide Dismutase 1 with Targeted Molecular Binders; Angewandte Chemie International Edition; Vol. 57; No. 21; 6212-6215; PMCID PMC6295353; 10.1002/anie.201802269
• Lai, Bert T.; Wilson, Jeré A.; et el. (2018) Epitope-Targeted Macrocyclic Peptide Ligand with Picomolar Cooperative Binding to Interleukin-17F; Chemistry: a European Journal; Vol. 24; No. 15; 3760-3767; 10.1002/chem.201704752
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• Su, Yapeng; Wei, Wei; et el. (2017) Single-cell analysis resolves the cell state transition and signaling dynamics associated with melanoma drug-induced resistance; Proceedings of the National Academy of Sciences of the United States of America; Vol. 114; No. 52; 13679-13684; PMCID PMC5748184; 10.1073/pnas.1712064115
• Xue, Qiong; Bettini, Emily; et el. (2017) Single-cell multiplexed cytokine profiling of CD19 CAR-T cells reveals a diverse landscape of polyfunctional antigen-specific response; Journal for ImmunoTherapy of Cancer; Vol. 5; Art. No. 85; PMCID PMC5697351; 10.1186/s40425-017-0293-7
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• Flashner-Abramson, E.; Heath, J. R.; et el. (2017) Understanding cancer phenomena using a thermodynamic-based approach; European Biophysics Journal; Vol. 46; No. S1; S274; 10.1007/s00249-017-1222-x
• Tang, Yin; Wang, Zhuo; et el. (2017) High-throughput screening of rare metabolically active tumor cells in pleural effusion and peripheral blood of lung cancer patients; Proceedings of the National Academy of Sciences of the United States of America; Vol. 114; No. 10; 2544-2549; PMCID PMC5347549; 10.1073/pnas.1612229114
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• Peng, Songming; Zaretsky, Jesse; et el. (2017) Technologies for personalizing cancer immunotherapies; Cancer Immunology Research; Vol. 5; No. S3; IA17; 10.1158/2326-6074.TUMIMM16-IA17
• Bunck, David N.; Atsavapranee, Beatriz; et el. (2017) Modulating SOD1 Folding Landscapes with Targeted Molecular Binders; Biophysical Journal; Vol. 112; No. 3, Supp. 1; 168a; 10.1016/j.bpj.2016.11.928
• Heath, James R. (2017) Single cell functional proteomics and metabolomics: A conduit to physicochemical models of tumor biology; Cancer Research; Vol. 77; No. S2; Art. No. IA07; 10.1158/1538-7445.EPSO16-IA07
• Bethune, Michael T.; Gee, Marvin H.; et el. (2016) Domain-swapped T cell receptors improve the safety of TCR gene therapy; eLife; Vol. 5; Art. No. e19095; PMCID PMC5101000; 10.7554/eLife.19095
• Kravchenko-Balasha, Nataly; Johnson, Hannah; et el. (2016) A Thermodynamic-Based Interpretation of Protein Expression Heterogeneity in Different Glioblastoma Multiforme Tumors Identifies Tumor-Specific Unbalanced Processes; Journal of Physical Chemistry B; Vol. 120; No. 26; 5990-5997; PMCID PMC4937832; 10.1021/acs.jpcb.6b01692
• Heath, James R. and Curl, Robert F. (2016) Harry Kroto (1939-2016); Nature; Vol. 533; No. 7604; 470-470; 10.1038/533470a
• Kravchenko-Balasha, Nataly; Shin, Young Shik; et el. (2016) Intercellular signaling through secreted proteins induces free-energy gradient-directed cell movement; Proceedings of the National Academy of Sciences of the United States of America; Vol. 113; No. 20; 5520-5525; PMCID PMC4878481; 10.1073/pnas.1602171113
• Wei, Wei; Shin, Young Shik; et el. (2016) Single-Cell Phosphoproteomics Resolves Adaptive Signaling Dynamics and Informs Targeted Combination Therapy in Glioblastoma; Cancer Cell; Vol. 29; No. 4; 563-573; PMCID PMC4831071; 10.1016/j.ccell.2016.03.012
• Henning, Ryan K.; Varghese, Joseph O.; et el. (2016) Degradation of Akt using protein-catalyzed capture agents; Journal of Peptide Science; Vol. 22; No. 4; 196-200; PMCID PMC4883657; 10.1002/psc.2858
• Poovathingal, Suresh Kumar; Kravchenko-Balasha, Nataly; et el. (2016) Critical Points in Tumorigenesis: A Carcinogen-Initiated Phase Transition Analyzed via Single-Cell Proteomics; Small; Vol. 12; No. 11; 1425-1431; PMCID PMC4886749; 10.1002/smll.201501178
• Xue, Min; Wei, Wei; et el. (2016) Supramolecular Probes for Assessing Glutamine Uptake Enable Semi-Quantitative Metabolic Models in Single Cells; Journal of the American Chemical Society; Vol. 138; No. 9; 3085-3093; PMCID PMC4887079; 10.1021/jacs.5b12187
• Heath, James R.; Ribas, Antoni; et el. (2016) Single-cell analysis tools for drug discovery and development; Nature Reviews Drug Discovery; Vol. 15; No. 3; 204-216; PMCID PMC4883669; 10.1038/nrd.2015.16
• Liang, JingXin; Nag, Arundhati; et el. (2016) Detection of a Geographically Diverse Malarial Biomarker via Multi-Epitope Targeted Screening; Biophysical Journal; Vol. 110; No. 3; 519A; 10.1016/j.bpj.2015.11.2774
• Farrow, Blake; Wang, Andrew G.; et el. (2016) Mimicking Protein Functions with Entropically Constrained Peptides; Biophysical Journal; Vol. 110; No. 3; 203A; 10.1016/j.bpj.2015.11.1134
• Bunck, David N.; Museth, Katrine; et el. (2016) Molecular Modulation of Protein Energy Landscapes; Biophysical Journal; Vol. 110; No. 3; 391A; 10.1016/j.bpj.2015.11.2110
• Heath, James R. (2015) Nanotechnologies for biomedical science and translational medicine; Proceedings of the National Academy of Sciences of the United States of America; Vol. 112; No. 47; 14436-14443; PMCID PMC4664315; 10.1073/pnas.1515202112
• Das, Samir; Nag, Arundhati; et el. (2015) A General Synthetic Approach for Designing Epitope Targeted Macrocyclic Peptide Ligands; Angewandte Chemie International Edition; Vol. 54; No. 45; 13219-13224; PMCID PMC4890538; 10.1002/anie.201505243
• Xue, Min; Wei, Wei; et el. (2015) Developing integrated single-cell metabolic/proteomic assays; Cancer Research; Vol. 75; No. S; Art. No. 1995; 10.1158/1538-7445.AM2015-1995
• Farrow, Blake; Wong, Michelle; et el. (2015) Epitope Targeting of Tertiary Protein Structure Enables Target-Guided Synthesis of a Potent In-Cell Inhibitor of Botulinum Neurotoxin; Angewandte Chemie International Edition; Vol. 54; No. 24; 7114-7119; PMCID PMC5444873; 10.1002/anie.201502451
• Shin, Young Shik; Kim, Jungwoo; et el. (2015) Quantitative assessments of glycolysis from single cells; Technology; Vol. 3; No. 4; 172-178; PMCID PMC4728151; 10.1142/S2339547815200058
• Varghese, Joseph O.; Agbo, Peter; et el. (2015) The Influence of Water on the Optical Properties of Single-Layer Molybdenum Disulfide; Advanced Materials; Vol. 27; No. 17; 2734-2740; 10.1002/adma.201500555
• Deyle, Kaycie M.; Farrow, Blake; et el. (2015) A protein-targeting strategy used to develop a selective inhibitor of the E17K point mutation in the PH domain of Akt1; Nature Chemistry; Vol. 7; No. 5; 455-462; PMCID PMC4408887; 10.1038/nchem.2223
• Xue, Min; Wei, Wei; et el. (2015) Chemical Methods for the Simultaneous Quantitation of Metabolites and Proteins from Single Cells; Journal of the American Chemical Society; Vol. 137; No. 12; 4066-4069; PMCID PMC4883658; 10.1021/jacs.5b00944
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• Heath, James R.; Wei, Wei; et el. (2014) Nanotechnology and single cell proteomics as a diagnostic tool; Cancer Research; Vol. 74; No. 19 Suppleme; Art. No. SY23-02; 10.1158/1538-7445.AM2014-SY23-02
• Lin, Lin; Ma, Chao; et el. (2014) Human NK Cells Licensed by Killer Ig Receptor Genes Have an Altered Cytokine Program That Modifies CD4+ T Cell Function; Journal of Immunology; Vol. 193; No. 2; 940-949; PMCID PMC4096688; 10.4049/jimmunol.1400093
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• Kravchenko-Balasha, Nataly; Wang, Jun; et el. (2014) Glioblastoma cellular architectures are predicted through the characterization of two-cell interactions; Proceedings of the National Academy of Sciences of the United States of America; Vol. 111; No. 17; 6521-6526; PMCID PMC4035957; 10.1073/pnas.1404462111
• Zhao, Jimmy L.; Ma, Chao; et el. (2014) Conversion of Danger Signals into Cytokine Signals by Hematopoietic Stem and Progenitor Cells for Regulation of Stress-Induced Hematopoiesis; Cell Stem Cell; Vol. 14; No. 4; 445-459; PMCID PMC4119790; 10.1016/j.stem.2014.01.007
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• Gini, Beatrice and Heath, James R. (2013) The mTOR Kinase Inhibitors, CC214-1 and CC214-2, Preferentially Block the Growth of EGFRvIII-Activated Glioblastomas; Clinical Cancer Research; Vol. 19; No. 20; 5722-5732; PMCID PMC3815450; 10.1158/1078-0432.CCR-13-0527
• Wang, Jun; Hwang, Kiwook; et el. (2013) Fast Metabolic Response to Drug Intervention Through Analysis on a Miniaturized, Highly Integrated Molecular Imaging System; Journal of Nuclear Medicine; Vol. 54; No. 10; 1820-1824; PMCID PMC4106462; 10.2967/jnumed.112.118497
• Farrow, Blake; Hong, Sung A.; et el. (2013) A Chemically Synthesized Capture Agent Enables the Selective, Sensitive, and Robust Electrochemical Detection of Anthrax Protective Antigen; ACS Nano; Vol. 7; No. 10; 9452-9460; 10.1021/nn404296k
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• Wei, Wei; Shi, Qihui; et el. (2013) Hypoxia induces a phase transition within a kinase signaling network in cancer cells; Proceedings of the National Academy of Sciences of the United States of America; Vol. 110; No. 15; E1352-E1360; PMCID PMC3625329; 10.1073/pnas.1303060110
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