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    title = "Inhibition of SARS-CoV-2 growth in the lungs of mice by a peptide-conjugated morpholino oligomer targeting viral RNA",
    journal = "Moleclar Therapy - Nucleic Acids",
    year = "2024",
    url = "https://authors.library.caltech.edu/records/hy9vj-3dr12",
    id = "record",
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    id = "record",
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    volume = "56"
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    title = "The genomic and cellular basis of biosynthetic innovation in rove beetles",
    journal = "Cell",
    year = "2024",
    url = "https://authors.library.caltech.edu/records/8n92k-h7b39",
    id = "record",
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    doi = "10.1016/j.cell.2024.05.012",
    volume = "187"
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    title = "Genome organization around nuclear speckles drives mRNA splicing efficiency",
    journal = "Nature",
    year = "2024",
    url = "https://authors.library.caltech.edu/records/q1s9m-d2498",
    id = "record",
    issn = "0028-0836",
    doi = "10.1038/s41586-024-07429-6"
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    title = "Denaturing purifications demonstrate that PRC2 and other widely reported chromatin proteins do not appear to bind directly to RNA in vivo",
    journal = "Molecular Cell",
    year = "2024",
    url = "https://authors.library.caltech.edu/records/9bxjt-nqd52",
    id = "record",
    issn = "1097-2765",
    doi = "10.1016/j.molcel.2024.01.026",
    volume = "84",
    pmcid = "PMC10997485"
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    title = "SPIDR: a highly multiplexed method for mapping RNA-protein interactions uncovers a potential mechanism for selective translational suppression upon cellular stress",
    year = "2023",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20230725-706033000.26",
    id = "record",
    doi = "10.1101/2023.06.05.543769",
    pmcid = "PMC10274648"
}


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    title = "Long non-coding RNAs: definitions, functions, challenges and recommendations",
    journal = "Nature Reviews Molecular Cell Biology",
    year = "2023",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20230203-893794600.55",
    id = "record",
    issn = "1471-0072",
    doi = "10.1038/s41580-022-00566-8",
    volume = "24",
    pmcid = "PMC10213152"
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    title = "3D genome organization around nuclear speckles drives mRNA splicing efficiency",
    year = "2023",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20230316-182623000.46",
    id = "record",
    doi = "10.1101/2023.01.04.522632"
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    title = "Simultaneous mapping of 3D structure and nascent RNAs argues against nuclear compartments that preclude transcription",
    journal = "Cell Reports",
    year = "2022",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20230123-451320900.9",
    id = "record",
    issn = "2211-1247",
    doi = "10.1016/j.celrep.2022.111730",
    volume = "41",
    pmcid = "PMC9793828"
}


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    title = "Regulatory non-coding RNAs: everything is possible, but what is important?",
    journal = "Nature Methods",
    year = "2022",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20221019-344256700.20",
    id = "record",
    issn = "1548-7091",
    doi = "10.1038/s41592-022-01629-6",
    volume = "19"
}


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    title = "Integrative genome modeling platform reveals essentiality of rare contact events in 3D genome organizations",
    journal = "Nature Methods",
    year = "2022",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20210824-174746931",
    id = "record",
    issn = "1548-7091",
    doi = "10.1038/s41592-022-01527-x",
    volume = "19"
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    title = "Essential Roles for RNA in Shaping Nuclear Organization",
    journal = "Cold Spring Harbor Perspectives in Biology",
    year = "2022",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20210921-151614850",
    id = "record",
    issn = "1943-0264",
    doi = "10.1101/cshperspect.a039719",
    volume = "14",
    pmcid = "PMC9159268"
}


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    title = "Xist spatially amplifies SHARP/SPEN recruitment to balance chromosome-wide silencing and specificity to the X chromosome",
    journal = "Nature Structural and Molecular Biology",
    year = "2022",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20211102-173017796",
    id = "record",
    issn = "1545-9993",
    doi = "10.1038/s41594-022-00739-1",
    volume = "29",
    pmcid = "PMC8969943"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20220422-230105510,
    title = "How non-coding RNAs shape nuclear structure to regulate gene expression",
    journal = "Biophysical Journal",
    year = "2022",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20220422-230105510",
    id = "record",
    issn = "0006-3495",
    doi = "10.1016/j.bpj.2021.11.1898",
    volume = "121"
}


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    title = "SPRITE: a genome-wide method for mapping higher-order 3D interactions in the nucleus using combinatorial split-and-pool barcoding",
    journal = "Nature Protocols",
    year = "2022",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20220111-225123800",
    id = "record",
    issn = "1754-2189",
    doi = "10.1038/s41596-021-00633-y",
    volume = "17"
}


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    title = "Single-cell measurement of higher-order 3D genome organization with scSPRITE",
    journal = "Nature Biotechnology",
    year = "2022",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20200813-130113364",
    id = "record",
    issn = "1087-0156",
    doi = "10.1038/s41587-021-00998-1",
    volume = "40"
}


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    title = "Xist nucleates local protein gradients to propagate silencing across the X chromosome",
    journal = "Cell",
    year = "2021",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20211118-231403494",
    id = "record",
    issn = "0092-8674",
    doi = "10.1016/j.cell.2021.10.022",
    volume = "184",
    pmcid = "PMC8671326"
}


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    title = "RNA promotes the formation of spatial compartments in the nucleus",
    journal = "Cell",
    year = "2021",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20200826-110847363",
    id = "record",
    issn = "0092-8674",
    doi = "10.1016/j.cell.2021.10.014",
    volume = "184",
    pmcid = "PMC9115877"
}


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    title = "Nuclear compartmentalization as a mechanism of quantitative control of gene expression",
    journal = "Nature Reviews. Molecular Cell Biology",
    year = "2021",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20210803-140228133",
    id = "record",
    issn = "1471-0072",
    doi = "10.1038/s41580-021-00387-1",
    volume = "22"
}


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    title = "Integrated spatial genomics reveals global architecture of single nuclei",
    journal = "Nature",
    year = "2021",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20201207-124413570",
    id = "record",
    issn = "0028-0836",
    doi = "10.1038/s41586-020-03126-2",
    volume = "590",
    pmcid = "PMC7878433"
}


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    title = "SARS-CoV-2 disrupts splicing, translation, and protein trafficking to suppress host defenses",
    journal = "Cell",
    year = "2020",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20201008-083809040",
    id = "record",
    issn = "0092-8674",
    doi = "10.1016/j.cell.2020.10.004",
    volume = "183",
    pmcid = "PMC7543886"
}


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    title = "Xist-seeded nucleation sites form local concentration gradients of silencing proteins to inactivate the X-chromosome",
    year = "2020",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20201123-130437407",
    id = "record",
    doi = "10.1101/2020.11.22.393546"
}


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    title = "A protein assembly mediates Xist localization and gene silencing",
    journal = "Nature",
    year = "2020",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20200310-130644860",
    id = "record",
    issn = "0028-0836",
    doi = "10.1038/s41586-020-2703-0",
    volume = "587",
    pmcid = "PMC7644664"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20201012-163632672,
    title = "High-Resolution Mapping of Multiway Enhancer-Promoter Interactions Regulating Pathogen Detection",
    journal = "Molecular Cell",
    year = "2020",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20201012-163632672",
    id = "record",
    issn = "1097-2765",
    doi = "10.1016/j.molcel.2020.09.005",
    volume = "80",
    pmcid = "PMC7572724"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20200615-114647527,
    title = "Xist drives spatial compartmentalization of DNA and protein to orchestrate initiation and maintenance of X inactivation",
    journal = "Current Opinion in Cell Biology",
    year = "2020",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20200615-114647527",
    id = "record",
    issn = "0955-0674",
    doi = "10.1016/j.ceb.2020.04.009",
    volume = "64"
}


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    title = "Approaches for Understanding the Mechanisms of Long Noncoding RNA Regulation of Gene Expression",
    journal = "Cold Spring Harbor Perspectives in Biology",
    year = "2019",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20191218-091029384",
    id = "record",
    issn = "1943-0264",
    doi = "10.1101/cshperspect.a032151",
    volume = "11",
    pmcid = "PMC6886450"
}


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    title = "The bipartite TAD organization of the X-inactivation center ensures opposing developmental regulation of Tsix and Xist",
    journal = "Nature Genetics",
    year = "2019",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20190603-084109257",
    id = "record",
    issn = "1061-4036",
    doi = "10.1038/s41588-019-0412-0",
    volume = "51",
    pmcid = "PMC6551226"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20190508-095119340,
    title = "Phase separation drives X-chromosome inactivation: a hypothesis",
    journal = "Nature Structural \& Molecular Biology",
    year = "2019",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20190508-095119340",
    id = "record",
    issn = "1545-9985",
    doi = "10.1038/s41594-019-0223-0",
    volume = "26"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20180627-133236822,
    title = "The NORAD lncRNA assembles a topoisomerase complex critical for genome stability",
    journal = "Nature",
    year = "2018",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20180627-133236822",
    id = "record",
    issn = "0028-0836",
    doi = "10.1038/s41586-018-0453-z",
    volume = "561"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20180607-101054915,
    title = "Higher-Order Inter-chromosomal Hubs Shape 3D Genome Organization in the Nucleus",
    journal = "Cell",
    year = "2018",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20180607-101054915",
    id = "record",
    issn = "0092-8674",
    doi = "10.1016/j.cell.2018.05.024",
    volume = "174",
    pmcid = "PMC6548320"
}


@inbook{https://resolver.caltech.edu/CaltechAUTHORS:20171115-111045657,
    title = "RNA Detection: Methods and Protocols",
    chapter = "RAP-MS: A Method to Identify Proteins that Interact Directly with a Specific RNA Molecule in Cells",
    year = "2017",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20171115-111045657",
    id = "record",
    isbn = "978-1-4939-7212-8",
    doi = "10.1007/978-1-4939-7213-5\_31"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20170918-080921978,
    title = "The 4D nucleome project",
    journal = "Nature",
    year = "2017",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20170918-080921978",
    id = "record",
    issn = "0028-0836",
    doi = "10.1038/nature23884",
    volume = "549",
    pmcid = "PMC5617335"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20170616-092953242,
    title = {Response to Comment on "Xist recruits the X chromosome to the nuclear lamina to enable chromosome-wide silencing"},
    journal = "Science",
    year = "2017",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20170616-092953242",
    id = "record",
    issn = "0036-8075",
    doi = "10.1126/science.aam5439",
    volume = "356"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20170622-101815381,
    title = "Cell scientist to watch – Mitchell Guttman",
    journal = "Journal of Cell Science",
    year = "2017",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20170622-101815381",
    id = "record",
    issn = "0021-9533",
    doi = "10.1242/jcs.203976",
    volume = "130"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20170320-102657946,
    title = "Re-evaluating the foundations of lncRNA–Polycomb function",
    journal = "EMBO Journal",
    year = "2017",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20170320-102657946",
    id = "record",
    issn = "1460-2075",
    doi = "10.15252/embj.201796796",
    volume = "36"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20170228-082210878,
    title = "Linking Protein and RNA Function within the Same Gene",
    journal = "Cell",
    year = "2017",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20170228-082210878",
    id = "record",
    issn = "0092-8674",
    doi = "10.1016/j.cell.2017.02.014",
    volume = "168"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20170623-103451742,
    title = "How a lncRNA Shapes Chromatin Structure to Control Gene Expression",
    journal = "Biophysical Journal",
    year = "2017",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20170623-103451742",
    id = "record",
    issn = "0006-3495",
    doi = "10.1016/j.bpj.2016.11.868",
    volume = "112"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20161026-132024065,
    title = "Quantitative predictions of protein interactions with long non-coding RNAs",
    journal = "Nature Methods",
    year = "2017",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20161026-132024065",
    id = "record",
    issn = "1548-7091",
    doi = "10.1038/nmeth.4100",
    volume = "14"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20170310-155810626,
    title = "Uncovering mechanisms of lncRNA function through comprehensive identification of direct lncRNA-interacting proteins",
    journal = "Molecular Biology of the Cell",
    year = "2016",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20170310-155810626",
    id = "record",
    issn = "1059-1524",
    doi = "10.1091/mbc.E16-10-0736",
    volume = "27"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20161031-094814417,
    title = "Long non-coding RNAs: spatial amplifiers that control nuclear structure and gene expression",
    journal = "Nature Reviews. Molecular Cell Biology",
    year = "2016",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20161031-094814417",
    id = "record",
    issn = "1471-0072",
    doi = "10.1038/nrm.2016.126",
    volume = "17"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20161012-162725499,
    title = "Local regulation of gene expression by lncRNA promoters, transcription, and splicing",
    journal = "Nature",
    year = "2016",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20161012-162725499",
    id = "record",
    issn = "0028-0836",
    doi = "10.1038/nature20149",
    volume = "539",
    pmcid = "PMC6853796"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20160418-091128052,
    title = "Xist recruits the X chromosome to the nuclear lamina to enable chromosome-wide silencing",
    journal = "Science",
    year = "2016",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20160418-091128052",
    id = "record",
    issn = "0036-8075",
    doi = "10.1126/science.aae0047",
    volume = "354"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20160912-092146480,
    title = "m⁶A RNA methylation promotes XIST-mediated transcriptional repression",
    journal = "Nature",
    year = "2016",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20160912-092146480",
    id = "record",
    issn = "0028-0836",
    doi = "10.1038/nature19342",
    volume = "537",
    pmcid = "PMC5509218"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20160210-225928240,
    title = "Robust transcriptome-wide discovery of RNA-binding protein binding sites with enhanced CLIP (eCLIP)",
    journal = "Nature Methods",
    year = "2016",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20160210-225928240",
    id = "record",
    issn = "1548-7091",
    doi = "10.1038/nmeth.3810",
    volume = "13"
}


@other{https://resolver.caltech.edu/CaltechAUTHORS:20160513-141401565,
    title = "Neighborhood regulation by lncRNA promoters, transcription, and splicing",
    year = "2016",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20160513-141401565",
    id = "record",
    doi = "10.1101/050948"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20160512-085629396,
    title = "A Guide to Packing Your DNA",
    journal = "Cell",
    year = "2016",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20160512-085629396",
    id = "record",
    issn = "0092-8674",
    doi = "10.1016/j.cell.2016.03.039",
    volume = "165"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20160211-121026093,
    title = "Evolutionary analysis across mammals reveals distinct classes of long non-coding RNAs",
    journal = "Genome Biology",
    year = "2016",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20160211-121026093",
    id = "record",
    issn = "1474-760X",
    doi = "10.1186/s13059-016-0880-9",
    volume = "17",
    pmcid = "PMC4739325"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20150721-085701041,
    title = "The NIH BD2K center for big data in translational genomics",
    journal = "Journal of the American Medical Informatics Association",
    year = "2015",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20150721-085701041",
    id = "record",
    issn = "1067-5027",
    doi = "10.1093/jamia/ocv047",
    volume = "22",
    pmcid = "PMC5009913"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20150319-091012142,
    title = "The Xist lncRNA interacts with SHARP to silence transcription through HDAC3",
    journal = "Nature",
    year = "2015",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20150319-091012142",
    id = "record",
    issn = "0028-0836",
    doi = "10.1038/nature14443",
    volume = "521",
    pmcid = "PMC4516396"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20150106-114459354,
    title = "Simultaneous generation of many RNA-seq libraries in a single reaction",
    journal = "Nature Methods",
    year = "2015",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20150106-114459354",
    id = "record",
    issn = "1548-7091",
    doi = "10.1038/nmeth.3313",
    volume = "12",
    pmcid = "PMC4712044"
}


@inbook{https://resolver.caltech.edu/CaltechAUTHORS:20150507-091048417,
    title = "Nuclear Bodies and Noncoding RNAs: Methods and Protocols",
    chapter = "RNA Antisense Purification (RAP) for Mapping RNA Interactions with Chromatin",
    year = "2015",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20150507-091048417",
    id = "record",
    isbn = "978-1-4939-2252-9",
    doi = "10.1007/978-1-4939-2253-6\_11"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20141027-082339763,
    title = "Long noncoding RNAs: an emerging link between gene regulation and nuclear organization",
    journal = "Trends in Cell Biology",
    year = "2014",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20141027-082339763",
    id = "record",
    issn = "0962-8924",
    doi = "10.1016/j.tcb.2014.08.009",
    volume = "24",
    pmcid = "PMC4254690"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20150604-151125153,
    title = "Analysis of long non-coding RNA expression and function in a mouse model of glioblastoma",
    journal = "Cancer Research",
    year = "2014",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20150604-151125153",
    id = "record",
    issn = "0008-5472",
    doi = "10.1158/1538-7445.AM2014-524",
    volume = "74"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20150604-145109677,
    title = "Use of complex oligonucleotide libraries for concurrent high-resolution fluorescence imaging of both DNA and RNA in various sample types",
    journal = "Cancer Research",
    year = "2014",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20150604-145109677",
    id = "record",
    issn = "0008-5472",
    doi = "10.1158/1538-7445.AM2014-1513",
    volume = "74"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20141002-105821728,
    title = "RNA-RNA Interactions Enable Specific Targeting of Noncoding RNAs to Nascent Pre-mRNAs and Chromatin Sites",
    journal = "Cell",
    year = "2014",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20141002-105821728",
    id = "record",
    issn = "0092-8674",
    doi = "10.1016/j.cell.2014.08.018",
    volume = "159",
    pmcid = "PMC4177037"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20140926-091148899,
    title = "Transcriptome-wide Mapping Reveals Widespread Dynamic-Regulated Pseudouridylation of ncRNA and mRNA",
    journal = "Cell",
    year = "2014",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20140926-091148899",
    id = "record",
    issn = "0092-8674",
    doi = "10.1016/j.cell.2014.08.028",
    volume = "159",
    pmcid = "PMC4180118"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20140919-083502960,
    title = "RNA and dynamic nuclear organization",
    journal = "Science",
    year = "2014",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20140919-083502960",
    id = "record",
    issn = "0036-8075",
    doi = "10.1126/science.1252966",
    volume = "345",
    pmcid = "PMC4186717"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20140204-110837761,
    title = "Topological organization of multichromosomal regions by the long intergenic noncoding RNA Firre",
    journal = "Nature Structural \& Molecular Biology",
    year = "2014",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20140204-110837761",
    id = "record",
    issn = "1545-9993",
    doi = "10.1038/nsmb.2764",
    volume = "21",
    pmcid = "PMC3950333"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20140130-081617569,
    title = "Methods for comprehensive experimental identification of RNA-protein interactions",
    journal = "Genome Biology",
    year = "2014",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20140130-081617569",
    id = "record",
    issn = "1465-6906",
    doi = "10.1186/gb4152",
    volume = "15",
    pmcid = "PMC4054858"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20161121-141829859,
    title = "The Xist lncRNA Exploits Three-Dimensional Genome Architecture to Spread Across the X Chromosome",
    journal = "Science",
    year = "2013",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20161121-141829859",
    id = "record",
    issn = "0036-8075",
    doi = "10.1126/science.1237973",
    volume = "341",
    pmcid = "PMC3778663"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20130812-133421825,
    title = "Ribosome Profiling Provides Evidence that Large Noncoding RNAs Do Not Encode Proteins",
    journal = "Cell",
    year = "2013",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20130812-133421825",
    id = "record",
    issn = "0092-8674",
    doi = "10.1016/j.cell.2013.06.009",
    volume = "154",
    pmcid = "PMC3756563"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20161121-130451607,
    title = "Transcriptional and Epigenetic Dynamics during Specification of Human Embryonic Stem Cells",
    journal = "Cell",
    year = "2013",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20161121-130451607",
    id = "record",
    issn = "0092-8674",
    doi = "10.1016/j.cell.2013.04.037",
    volume = "153",
    pmcid = "PMC3709577"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20161122-082748151,
    title = "Mutations causing medullary cystic kidney disease type 1 lie in a large VNTR in MUC1 missed by massively parallel sequencing",
    journal = "Nature Genetics",
    year = "2013",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20161122-082748151",
    id = "record",
    issn = "1061-4036",
    doi = "10.1038/ng.2543",
    volume = "45",
    pmcid = "PMC3901305"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20161122-073136200,
    title = "A High-Throughput Chromatin Immunoprecipitation Approach Reveals Principles of Dynamic Gene Regulation in Mammals",
    journal = "Molecular Cell",
    year = "2012",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20161122-073136200",
    id = "record",
    issn = "1097-2765",
    doi = "10.1016/j.molcel.2012.07.030",
    volume = "47",
    pmcid = "PMC3873101"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20161122-073117519,
    title = "Modular regulatory principles of large non-coding RNAs",
    journal = "Nature",
    year = "2012",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20161122-073117519",
    id = "record",
    issn = "0028-0836",
    doi = "10.1038/nature10887",
    volume = "482",
    pmcid = "PMC4197003"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20161121-154852383,
    title = "A high-resolution map of human evolutionary constraint using 29 mammals",
    journal = "Nature",
    year = "2011",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20161121-154852383",
    id = "record",
    issn = "0028-0836",
    doi = "10.1038/nature10530",
    volume = "478",
    pmcid = "PMC3207357"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20161121-153838401,
    title = "lincRNAs act in the circuitry controlling pluripotency and differentiation",
    journal = "Nature",
    year = "2011",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20161121-153838401",
    id = "record",
    issn = "0028-0836",
    doi = "10.1038/nature10398",
    volume = "477",
    pmcid = "PMC3175327"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20161122-084822107,
    title = "Computational methods for transcriptome annotation and quantification using RNA-seq",
    journal = "Nature Methods",
    year = "2011",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20161122-084822107",
    id = "record",
    issn = "1548-7091",
    doi = "10.1038/NMETH.1613",
    volume = "8"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20161122-080133273,
    title = "Integrative genomics viewer",
    journal = "Nature Biotechnology",
    year = "2011",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20161122-080133273",
    id = "record",
    issn = "1087-0156",
    doi = "10.1038/nbt.1754",
    volume = "29",
    pmcid = "PMC3346182"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20161122-075138398,
    title = "Large intergenic non-coding RNA-RoR modulates reprogramming of human induced pluripotent stem cells",
    journal = "Nature Genetics",
    year = "2010",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20161122-075138398",
    id = "record",
    issn = "1061-4036",
    doi = "10.1038/ng.710",
    volume = "42",
    pmcid = "PMC3040650"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20161121-130357891,
    title = "A Large Intergenic Noncoding RNA Induced by p53 Mediates Global Gene Repression in the p53 Response",
    journal = "Cell",
    year = "2010",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20161121-130357891",
    id = "record",
    issn = "0092-8674",
    doi = "10.1016/j.cell.2010.06.040",
    volume = "142",
    pmcid = "PMC2956184"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20161122-073633977,
    title = "Ab initio reconstruction of cell type–specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs",
    journal = "Nature Biotechnology",
    year = "2010",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20161122-073633977",
    id = "record",
    issn = "1087-0156",
    doi = "10.1038/nbt.1633",
    volume = "28",
    pmcid = "PMC2868100"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20161121-135603621,
    title = "Digital transcriptome profiling from attomole-level RNA samples",
    journal = "Genome Research",
    year = "2010",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20161121-135603621",
    id = "record",
    issn = "1088-9051",
    doi = "10.1101/gr.102129.109",
    volume = "20",
    pmcid = "PMC2847755"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20161121-130217653,
    title = "Unbiased Reconstruction of a Mammalian Transcriptional Network Mediating Pathogen Responses",
    journal = "Science",
    year = "2009",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20161121-130217653",
    id = "record",
    issn = "0036-8075",
    doi = "10.1126/science.1179050",
    volume = "326",
    pmcid = "PMC2879337"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20161121-140449068,
    title = "Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression",
    journal = "Proceedings of the National Academy of Sciences of the United States of America",
    year = "2009",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20161121-140449068",
    id = "record",
    issn = "0027-8424",
    doi = "10.1073/pnas.0904715106",
    volume = "106",
    pmcid = "PMC2704857"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20161122-081912441,
    title = "Identifying novel constrained elements by exploiting biased substitution patterns",
    journal = "Bioinformatics",
    year = "2009",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20161122-081912441",
    id = "record",
    issn = "1367-4803",
    doi = "10.1093/bioinformatics/btp190",
    volume = "25",
    pmcid = "PMC2687944"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20161121-144950442,
    title = "Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals",
    journal = "Nature",
    year = "2009",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20161121-144950442",
    id = "record",
    issn = "0028-0836",
    doi = "10.1038/nature07672",
    volume = "458",
    pmcid = "PMC2754849"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20161121-151605200,
    title = "Assessing the Significance of Conserved Genomic Aberrations Using High Resolution Genomic Microarrays",
    journal = "PLoS Genetics",
    year = "2007",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20161121-151605200",
    id = "record",
    issn = "1553-7390",
    doi = "10.1371/journal.pgen.0030143",
    volume = "3",
    pmcid = "PMC1950957"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20161121-143539551,
    title = "N-cadherin Expression in Breast Cancer: Correlation with an Aggressive Histologic Variant – Invasive Micropapillary Carcinoma",
    journal = "Breast Cancer Research and Treatment",
    year = "2005",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20161121-143539551",
    id = "record",
    issn = "0167-6806",
    doi = "10.1007/s10549-005-7727-5",
    volume = "94"
}


@article{https://resolver.caltech.edu/CaltechAUTHORS:20161122-082438332,
    title = "A signaling pathway leading to metastasis is controlled by N-cadherin and the FGF receptor",
    journal = "Cancer Cell",
    year = "2002",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20161122-082438332",
    id = "record",
    issn = "1535-6108",
    doi = "10.1016/S1535-6108(02)00150-2",
    volume = "2"
}