@article{https://authors.library.caltech.edu/records/42eqy-fkv91,
    author = "Ma, Yitong and Budde, Mark W. and Zhu, Junqin and Elowitz, Michael B.",
    title = "Tuning Methylation-Dependent Silencing Dynamics by Synthetic Modulation of CpG Density",
    year = "2023",
    id = "https://authors.library.caltech.edu/records/42eqy-fkv91",
    issn = "2161-5063",
    doi = "10.1021/acssynbio.3c00078",
    volume = "12",
    number = "9",
    pages = "2536-2545"
}


@article{https://authors.library.caltech.edu/records/5wh3x-cj477,
    author = "Horns, Felix and Martinez, Joe A. and Fan, Chengcheng and Haque, Mehernaz and Linton, James M. and Tobin, Victoria and Santat, Leah and Maggiolo, Ailiena O. and Bjorkman, Pamela J. and Lois, Carlos and Elowitz, Michael B.",
    title = "Engineering RNA export for measurement and manipulation of living cells",
    year = "2023",
    id = "https://authors.library.caltech.edu/records/5wh3x-cj477",
    issn = "0092-8674",
    doi = "10.1016/j.cell.2023.06.013",
    volume = "186",
    number = "17",
    pmcid = "PMC10528933",
    pages = "3642-3658.e32"
}


@other{https://authors.library.caltech.edu/records/p39kv-fgh08,
    author = "Tran, Martin and Askary, Amjad and Elowitz, Michael B.",
    title = "Lineage motifs: developmental modules for control of cell type proportions",
    year = "2023",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20230725-706037000.28",
    id = "https://authors.library.caltech.edu/records/p39kv-fgh08",
    doi = "10.1101/2023.06.06.543925",
    pmcid = "PMC10274800"
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@article{https://authors.library.caltech.edu/records/hj8zd-08q75,
    author = "Zhu, Ronghui and Santat, Leah A. and Markson, Joseph S. and Nandagopal, Nagarajan and Gregrowicz, Jan and Elowitz, Michael B.",
    title = "Reconstitution of morphogen shuttling circuits",
    year = "2023",
    id = "https://authors.library.caltech.edu/records/hj8zd-08q75",
    issn = "2375-2548",
    doi = "10.1126/sciadv.adf9336",
    volume = "9",
    number = "28",
    pmcid = "PMC10337948",
    pages = "eadf9336"
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@article{https://authors.library.caltech.edu/records/1nbj8-kzc90,
    author = "Kong, Qing and Xia, Shiyu and Pan, Xingxin and Ye, Kaixiong and Li, Zhouyihan and Li, Haoyan and Tang, Xiaoqiang and Sahni, Nidhi and Yi, S. Stephen and Liu, Xing and Wu, Hao and Elowitz, Michael B. and Lieberman, Judy and Zhang, Zhibin",
    title = "Alternative splicing of GSDMB modulates killer lymphocyte-triggered pyroptosis",
    year = "2023",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20230613-730735700.10",
    id = "https://authors.library.caltech.edu/records/1nbj8-kzc90",
    issn = "2470-9468",
    doi = "10.1126/sciimmunol.adg3196",
    volume = "8",
    number = "82",
    pmcid = "PMC10338320",
    pages = "Art. No. eadg3196"
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@article{https://authors.library.caltech.edu/records/cm1xz-hrt65,
    author = "Cabrera, Alan and Edelstein, Hailey I. and Glykofrydis, Fokion and Love, Kasey S. and Palacios, Sebastian and Tycko, Josh and Zhang, Meng and Lensch, Sarah and Shields, Cara E. and Livingston, Mark and Weiss, Ron and Zhao, Huimin and Haynes, Karmella A. and Morsut, Leonardo and Chen, Yvonne Y. and Khalil, Ahmad S. and Wong, Wilson W. and Collins, James J. and Rosser, Susan J. and Polizzi, Karen and Elowitz, Michael B. and Fussenegger, Martin and Hilton, Isaac B. and Leonard, Joshua N. and Bintu, Lacramioara and Galloway, Kate E. and Deans, Tara L.",
    title = "The sound of silence: Transgene silencing in mammalian cell engineering",
    year = "2022",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20230203-893712500.43",
    id = "https://authors.library.caltech.edu/records/cm1xz-hrt65",
    issn = "2405-4712",
    doi = "10.1016/j.cels.2022.11.005",
    volume = "13",
    number = "12",
    pmcid = "PMC9880859",
    pages = "950-973"
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@article{https://authors.library.caltech.edu/records/0hqa5-02a70,
    author = "Wang, Sheng and Garcia-Ojalvo, Jordi and Elowitz, Michael B.",
    title = "Periodic spatial patterning with a single morphogen",
    year = "2022",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20230221-18374200.6",
    id = "https://authors.library.caltech.edu/records/0hqa5-02a70",
    issn = "2405-4712",
    doi = "10.1016/j.cels.2022.11.001",
    volume = "13",
    number = "12",
    pages = "1033-1047.e7"
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@article{https://authors.library.caltech.edu/records/ny5rx-x3886,
    author = "Amadei, Gianluca and Handford, Charlotte E. and Qiu, Chengxiang and De Jonghe, Joachim and Greenfeld, Hannah and Tran, Martin and Martin, Beth K. and Chen, Dong-Yuan and Aguilera-Castrejon, Alejandro and Hanna, Jacob H. and Elowitz, Michael B. and Hollfelder, Florian and Shendure, Jay and Glover, David M. and Zernicka-Goetz, Magdalena",
    title = "Embryo model completes gastrulation to neurulation and organogenesis",
    year = "2022",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20221010-454096500.25",
    id = "https://authors.library.caltech.edu/records/ny5rx-x3886",
    issn = "0028-0836",
    doi = "10.1038/s41586-022-05246-3",
    volume = "610",
    number = "7930",
    pmcid = "PMC9534772",
    pages = "143-153"
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@other{https://authors.library.caltech.edu/records/mt2za-c6023,
    author = "Granados, Alejandro A. and Kanrar, Nivedita and Elowitz, Michael B.",
    title = "Combinatorial expression motifs in signaling pathways",
    year = "2022",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20230322-368481000.42",
    id = "https://authors.library.caltech.edu/records/mt2za-c6023",
    doi = "10.1101/2022.08.21.504714"
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@other{https://authors.library.caltech.edu/records/a7vwv-mhw66,
    author = "Chen, Zibo and Linton, James M. and Zhu, Ronghui and Elowitz, Michael B.",
    title = "A synthetic protein-level neural network in mammalian cells",
    year = "2022",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20220712-283791000",
    id = "https://authors.library.caltech.edu/records/a7vwv-mhw66",
    doi = "10.1101/2022.07.10.499405"
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@article{https://authors.library.caltech.edu/records/9nx6n-5ne43,
    author = "Ding, Fangyuan and Su, Christina J. and Edmonds, KeHuan Kuo and Liang, Guohao and Elowitz, Michael B.",
    title = "Dynamics and functional roles of splicing factor autoregulation",
    year = "2022",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20200727-084029052",
    id = "https://authors.library.caltech.edu/records/9nx6n-5ne43",
    issn = "2211-1247",
    doi = "10.1016/j.celrep.2022.110985",
    volume = "39",
    number = "12",
    pmcid = "PMC9262138",
    pages = "Art. No. 110985"
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@article{https://authors.library.caltech.edu/records/4a7y9-nzb92,
    author = "Su, Christina J. and Murugan, Arvind and Linton, James M. and Yeluri, Akshay and Bois, Justin and Klumpe, Heidi and Langley, Matthew A. and Antebi, Yaron E. and Elowitz, Michael B.",
    title = "Ligand-receptor promiscuity enables cellular addressing",
    year = "2022",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20201210-134335099",
    id = "https://authors.library.caltech.edu/records/4a7y9-nzb92",
    issn = "2405-4712",
    doi = "10.1016/j.cels.2022.03.001",
    volume = "13",
    number = "5",
    pages = "408-425"
}


@article{https://authors.library.caltech.edu/records/4jqdv-nrv37,
    author = "Klumpe, Heidi E. and Langley, Matthew A. and Linton, James M. and Su, Christina J. and Antebi, Yaron E. and Elowitz, Michael B.",
    title = "The context-dependent, combinatorial logic of BMP signaling",
    year = "2022",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20201210-094756085",
    id = "https://authors.library.caltech.edu/records/4jqdv-nrv37",
    issn = "2405-4712",
    doi = "10.1016/j.cels.2022.03.002",
    volume = "13",
    number = "5",
    pmcid = "PMC9127470",
    pages = "388-407"
}


@other{https://authors.library.caltech.edu/records/ernz6-2xp43,
    author = "Wang, Sheng and Garcia-Ojalvo, Jordi and Elowitz, Michael B.",
    title = "Periodic spatial patterning with a single morphogen",
    year = "2022",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20220328-182609385",
    id = "https://authors.library.caltech.edu/records/ernz6-2xp43",
    doi = "10.1101/2022.03.21.484932"
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@article{https://authors.library.caltech.edu/records/yc4sr-fb679,
    author = "Ma, Yitong and Budde, Mark W. and Mayalu, Michaëlle N. and Zhu, Junqin and Lu, Andrew C. and Murray, Richard M. and Elowitz, Michael B.",
    title = "Synthetic mammalian signaling circuits for robust cell population control",
    year = "2022",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20200909-145940519",
    id = "https://authors.library.caltech.edu/records/yc4sr-fb679",
    issn = "0092-8674",
    doi = "10.1016/j.cell.2022.01.026",
    volume = "185",
    number = "6",
    pmcid = "PMC8995209",
    pages = "967-979"
}


@article{https://authors.library.caltech.edu/records/7d2gz-agv16,
    author = "Vlahos, Alexander E. and Kang, Jeewoo and Aldrete, Carlos A. and Zhu, Ronghui and Chong, Lucy S. and Elowitz, Michael B. and Gao, Xiaojing J.",
    title = "Protease-controlled secretion and display of intercellular signals",
    year = "2022",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20211026-141150169",
    id = "https://authors.library.caltech.edu/records/7d2gz-agv16",
    issn = "2041-1723",
    doi = "10.1038/s41467-022-28623-y",
    volume = "13",
    pmcid = "PMC8854555",
    pages = "Art. No. 912"
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@article{https://authors.library.caltech.edu/records/dcas8-y4s76,
    author = "Zhu, Ronghui and del Rio-Salgado, Jesus M. and Garcia-Ojalvo, Jordi and Elowitz, Michael B.",
    title = "Synthetic multistability in mammalian cells",
    year = "2022",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20210212-105104460",
    id = "https://authors.library.caltech.edu/records/dcas8-y4s76",
    issn = "0036-8075",
    doi = "10.1126/science.abg9765",
    volume = "375",
    number = "6578",
    pages = "Art. No. eabg9765"
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@article{https://authors.library.caltech.edu/records/wp4n2-mww55,
    author = "Cable, Jennifer and Elowitz, Michael B. and Domingos, Ana I. and Habib, Naomi and Itzkovitz, Shalev and Hamidzada, Homaira and Balzer, Michael S. and Yanai, Itai and Liberali, Prisca and Whited, Jessica and Streets, Aaron and Cai, Long and Stergachis, Andrew B. and Hong, Clarice Kit Yee and Keren, Leeat and Guilliams, Martin and Alon, Uri and Shalek, Alex K. and Hamel, Regan and Pfau, Sarah J. and Raj, Arjun and Quake, Stephen R. and Zhang, Nancy R. and Fan, Jean and Trapnell, Cole and Wang, Bo and Greenwald, Noah F. and Vento-Tormo, Roser and Santos, Silvia D. M. and Spencer, Sabrina L. and Garcia, Hernan G. and Arekatla, Geethika and Gaiti, Federico and Arbel-Goren, Rinat and Rulands, Steffen and Junker, Jan Philipp and Klein, Allon M. and Morris, Samantha A. and Murray, John I. and Galloway, Kate E. and Ratz, Michael and Romeike, Merrit",
    title = "Single cell biology—a Keystone Symposia report",
    year = "2021",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20211008-183538677",
    id = "https://authors.library.caltech.edu/records/wp4n2-mww55",
    issn = "0077-8923",
    doi = "10.1111/nyas.14692",
    volume = "1506",
    pages = "74-97"
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@other{https://authors.library.caltech.edu/records/qz3hc-zsb05,
    author = "Xu, Shuhui and Li, Kai and Ma, Liang and Zhang, Jianhan and Yoon, Shinae and Elowitz, Michael B. and Lin, Yihan",
    title = "Ratiometric RNA labeling allows dynamic multiplexed analysis of gene circuits in single cells",
    year = "2021",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20210929-151425994",
    id = "https://authors.library.caltech.edu/records/qz3hc-zsb05",
    doi = "10.1101/2021.09.23.461487"
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@article{https://authors.library.caltech.edu/records/fq0yw-pnf65,
    author = "Gong, Wuming and Granados, Alejandro A. and Hu, Jingyuan and Jones, Matthew G. and Raz, Ofir and Salvador-Martínez, Irepan and Zhang, Hanrui and Chow, Ke-Huan K. and Kwak, Il-Youp and Retkute, Renata and Prusokas, Alidivinas and Prusokas, Augustinas and Khodaverdian, Alex and Zhang, Richard and Rao, Suhas and Wang, Robert and Rennert, Phil and Saipradeep, Vangala G. and Sivadasan, Naveen and Rao, Aditya and Joseph, Thomas and Srinivasan, Rajgopal and Peng, Jiajie and Han, Lu and Shang, Xuequn and Garry, Daniel J. and Yu, Thomas and Chung, Verena and Mason, Michael and Liu, Zhandong and Guan, Yuanfang and Yosef, Nir and Shendure, Jay and Telford, Maximilian J. and Shapiro, Ehud and Elowitz, Michael B. and Meyer, Pablo",
    title = "Benchmarked approaches for reconstruction of in vitro cell lineages and in silico models of C. elegans and M. musculus developmental trees",
    year = "2021",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20210628-191053293",
    id = "https://authors.library.caltech.edu/records/fq0yw-pnf65",
    issn = "2405-4712",
    doi = "10.1016/j.cels.2021.05.008",
    volume = "12",
    number = "8",
    pages = "810-826"
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@article{https://authors.library.caltech.edu/records/jg2yt-f4n17,
    author = "Chen, Zibo and Elowitz, Michael B.",
    title = "Programmable protein circuit design",
    year = "2021",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20210413-072526147",
    id = "https://authors.library.caltech.edu/records/jg2yt-f4n17",
    issn = "0092-8674",
    doi = "10.1016/j.cell.2021.03.007",
    volume = "184",
    number = "9",
    pmcid = "PMC8087657",
    pages = "2284-2301"
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@article{https://authors.library.caltech.edu/records/zjfrp-a9k69,
    author = "Chow, Ke-Huan K. and Budde, Mark W. and Granados, Alejandro A. and Cabrera, Maria and Yoon, Shinae and Cho, Soomin and Huang, Ting-hao and Koulena, Noushin and Frieda, Kirsten L. and Cai, Long and Lois, Carlos and Elowitz, Michael B.",
    title = "Imaging cell lineage with a synthetic digital recording system",
    year = "2021",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20200225-135944187",
    id = "https://authors.library.caltech.edu/records/zjfrp-a9k69",
    issn = "0036-8075",
    doi = "10.1126/science.abb3099",
    volume = "372",
    number = "6538",
    pages = "Art. No. eabb3099"
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@other{https://authors.library.caltech.edu/records/2z0dm-q9917,
    author = "Flynn, Michael J. and Snitser, Olga and Flynn, James and Green, Samantha and Yelin, Idan and Szwarcwort-Cohen, Moran and Kishony, Roy and Elowitz, Michael B.",
    title = "A simple direct RT-LAMP SARS-CoV-2 saliva diagnostic",
    year = "2020",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20201123-140413855",
    id = "https://authors.library.caltech.edu/records/2z0dm-q9917",
    doi = "10.1101/2020.11.19.20234948"
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@other{https://authors.library.caltech.edu/records/425pg-3wb39,
    author = "Ding, Fangyuan and Elowitz, Michael B.",
    title = "Quantitative single-cell splicing analysis reveals an 'economy of scale' filter for gene expression",
    year = "2020",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20200601-094106134",
    id = "https://authors.library.caltech.edu/records/425pg-3wb39",
    doi = "10.1101/457432"
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@other{https://authors.library.caltech.edu/records/91hvf-49c47,
    author = "Gao, Xiaojing J. and Chong, Lucy S. and Ince, Michaela H. and Kim, Matthew S. and Elowitz, Michael B.",
    title = "Engineering multiple levels of specificity in an RNA viral vector",
    year = "2020",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20200529-070622811",
    id = "https://authors.library.caltech.edu/records/91hvf-49c47"
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@article{https://authors.library.caltech.edu/records/x8ffe-pb390,
    author = "Askary, Amjad and Sánchez-Guardado, Luis and Linton, James M. and Chadly, Duncan M. and Budde, Mark W. and Cai, Long and Lois, Carlos and Elowitz, Michael B.",
    title = "In situ readout of DNA barcodes and single base edits facilitated by in vitro transcription",
    year = "2020",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20190920-163128957",
    id = "https://authors.library.caltech.edu/records/x8ffe-pb390",
    issn = "1087-0156",
    doi = "10.1038/s41587-019-0299-4",
    volume = "38",
    number = "1",
    pmcid = "PMC6954335",
    pages = "66-75"
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@article{https://authors.library.caltech.edu/records/xj81z-bfr11,
    author = "Li, Pulin and Elowitz, Michael B.",
    title = "Communication codes in developmental signaling pathways",
    year = "2019",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20190718-110919202",
    id = "https://authors.library.caltech.edu/records/xj81z-bfr11",
    issn = "0950-1991",
    doi = "10.1242/dev.170977",
    volume = "146",
    number = "12",
    pmcid = "PMC6602343",
    pages = "Art. No. dev170977"
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@article{https://authors.library.caltech.edu/records/6gyk0-6zr59,
    author = "Ding, Fangyuan and Elowitz, Michael B.",
    title = "Constitutive splicing and economies of scale in gene expression",
    year = "2019",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20181107-102333115",
    id = "https://authors.library.caltech.edu/records/6gyk0-6zr59",
    issn = "1545-9985",
    doi = "10.1038/s41594-019-0226-x",
    volume = "26",
    number = "6",
    pmcid = "PMC6663491",
    pages = "424-432"
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@article{https://authors.library.caltech.edu/records/t7nsk-pqz47,
    author = "Nandagopal, Nagarajan and Santat, Leah A. and Elowitz, Michael B.",
    title = "Cis-activation in the Notch signaling pathway",
    year = "2019",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20181030-150639915",
    id = "https://authors.library.caltech.edu/records/t7nsk-pqz47",
    issn = "2050-084X",
    doi = "10.7554/eLife.37880",
    volume = "8",
    pmcid = "PMC6345567",
    pages = "Art. No. e37880"
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@article{https://authors.library.caltech.edu/records/71hzb-qgg05,
    author = "Ng, Kenneth K. N. and Yui, Mary A. and Mehta, Arnav and Siu, Sharmayne and Irwin, Blythe and Pease, Shirley and Hirose, Satoshi and Elowitz, Michael B. and Rothenberg, Ellen V. and Kueh, Hao Yuan",
    title = "A stochastic epigenetic switch controls the dynamics of T-cell lineage commitment",
    year = "2018",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20181030-143317624",
    id = "https://authors.library.caltech.edu/records/71hzb-qgg05",
    issn = "2050-084X",
    doi = "10.7554/eLife.37851",
    volume = "7",
    pmcid = "PMC6245732",
    pages = "Art. No. e37851"
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@article{https://authors.library.caltech.edu/records/sacbt-zcq12,
    author = "Martinez-Corral, Rosa and Raimundez, Elba and Lin, Yihan and Elowitz, Michael B. and Garcia-Ojalvo, Jordi",
    title = "Self-Amplifying Pulsatile Protein Dynamics without Positive Feedback",
    year = "2018",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20181010-111625116",
    id = "https://authors.library.caltech.edu/records/sacbt-zcq12",
    issn = "2405-4712",
    doi = "10.1016/j.cels.2018.08.012",
    volume = "7",
    number = "4",
    pages = "453-462"
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@article{https://authors.library.caltech.edu/records/m9nh0-t8p73,
    author = "Siddique, Hifzur and Zheng, Mengmei and Kou, Yi and Chen, Chia-Lin Chen and Kumar, Dinesh Babu Uthaya and Winer, Peleg and Rokan, Ahmed and Punj, Vasu and Sher, Linda S. and Tahara, Stanley M. and Ray, Ratna and Elowitz, Michael and Liang, Chengyu and Chen, Lin and Tsukamoto, Hidekazu and Machida, Keigo",
    title = "Novel NOTCH-Binding Protein Directs Self-Renewal of Tumor-Initiating Stem-like Cells and HCC Development through Cell Fate Reprogramming",
    year = "2018",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20181024-102930532",
    id = "https://authors.library.caltech.edu/records/m9nh0-t8p73",
    issn = "0270-9139",
    doi = "10.1002/hep.30257",
    volume = "68",
    number = "S1",
    pages = "Art. No. 1365"
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@article{https://authors.library.caltech.edu/records/keqy2-b6k25,
    author = "Gao, Xiaojing J. and Chong, Lucy S. and Kim, Matthew S. and Elowitz, Michael B.",
    title = "Programmable protein circuits in living cells",
    year = "2018",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20180920-125150716",
    id = "https://authors.library.caltech.edu/records/keqy2-b6k25",
    issn = "0036-8075",
    doi = "10.1126/science.aat5062",
    volume = "361",
    number = "6408",
    pmcid = "PMC7176481",
    pages = "1252-1258"
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@article{https://authors.library.caltech.edu/records/ctvjd-n4009,
    author = "Siddique, H. R. and Zheng, M. and Kou, Y. and Chen, C.-L. and Uthaya Kumar, D. B. and Punj, V. and Winer, P. and Pita, A. and Sher, L. and Tahara, S. M. and Giacca, M. and Ray, R. B. and Elowitz, M. and Liang, C. and Chen, L. and Tsukamoto, H. and Machida, K.",
    title = "Cell fate and metabolic reprogramming of tumor-initiating stem-like cells",
    year = "2018",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20181009-132205192",
    id = "https://authors.library.caltech.edu/records/ctvjd-n4009",
    issn = "0145-6008",
    doi = "10.1111/acer.13834",
    volume = "42",
    number = "S2",
    pages = "Art. No. 427"
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@article{https://authors.library.caltech.edu/records/4jkqx-t4e23,
    author = "Rosenthal, Adam Z. and Qi, Yutao and Hormoz, Sahand and Park, Jin and Hsin-Jung Li, Sophia and Elowitz, Michael",
    title = "Metabolic interactions between dynamic bacterial subpopulations",
    year = "2018",
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    id = "https://authors.library.caltech.edu/records/4jkqx-t4e23",
    issn = "2050-084X",
    doi = "10.7554/eLife.33099",
    volume = "7",
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    author = "Li, Pulin and Markson, Joseph S. and Wang, Sheng and Chen, Siheng and Vachharajani, Vipul and Elowitz, Michael B.",
    title = "Morphogen gradient reconstitution reveals Hedgehog pathway design principles",
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    author = "Park, Jin and Dies, Marta and Lin, Yihan and Hormoz, Sahand and Smith-Unna, Stephanie E. and Quinodoz, Sofia A. and Hernández-Jiménez, María Jesús and Garcia-Ojalvo, Jordi and Locke, James C. W. and Elowitz, Michael B.",
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    author = "Nandagopal, Nagarajan and Santat, Leah A. and LeBon, Lauren and Sprinzak, David and Bronner, Marianne E. and Elowitz, Michael B.",
    title = "Dynamic Ligand Discrimination in the Notch Signaling Pathway",
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    doi = "10.1016/j.cell.2018.01.002",
    volume = "172",
    number = "4",
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    author = "Tycko, Josh and Van, Mike V. and Elowitz, Michael B. and Bintu, Lacramioara",
    title = "Advancing towards a global mammalian gene regulation model through single-cell analysis and synthetic biology",
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    doi = "10.1016/j.cobme.2017.10.011",
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    author = "Antebi, Yaron E. and Linton, James M. and Klumpe, Heidi and Bintu, Bogdan and Gong, Mengsha and Su, Christina and McCardell, Reed and Elowitz, Michael B.",
    title = "Combinatorial Signal Perception in the BMP Pathway",
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    title = "Challenges and emerging directions in single-cell analysis",
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    author = "Clevers, Hans and Rafelski, Susanne and Elowitz, Michael and Klein, Allon and Shendure, Jay and Trapnell, Cole and Lein, Ed and Lundberg, Emma and Uhlen, Matthias and Martinez-Arias, Alfonso and Sanes, Joshua R. and Blainey, Paul and Eberwine, James and Kim, Junhyong and Love, J. Christopher",
    title = {What Is Your Conceptual Definition of "Cell Type" in the Context of a Mature Organism?},
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    author = "Antebi, Yaron E. and Nandagopal, Nagarajan and Elowitz, Michael B.",
    title = "An operational view of intercellular signaling pathways",
    year = "2017",
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    author = "Frieda, Kirsten L. and Linton, James M. and Hormoz, Sahand and Choi, Joonhyuk and Chow, Ke-Huan K. and Singer, Zachary S. and Budde, Mark W. and Elowitz, Michael B. and Cai, Long",
    title = "Synthetic recording and in situ readout of lineage information in single cells",
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    author = "Hormoz, Sahand and Singer, Zakary S. and Linton, James M. and Antebi, Yaron E. and Shraiman, Boris I. and Elowitz, Michael B.",
    title = "Inferring Cell-State Transition Dynamics from Lineage Trees and Endpoint Single-Cell Measurements",
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    author = "Gao, Xiaojing J. and Elowitz, Michael B.",
    title = "Synthetic biology: Precision timing in a cell",
    year = "2016",
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    doi = "10.1038/nature19478",
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    author = "Kueh, Hao Yuan and Yui, Mary A. and Ng, Kenneth K. H. and Pease, Shirley S. and Zhang, Jingli A. and Damle, Sagar S. and Freedman, George and Siu, Sharmayne and Bernstein, Irwin D. and Elowitz, Michael B. and Rothenberg, Ellen V.",
    title = "Asynchronous combinatorial action of four regulatory factors activates Bcl11b for T cell commitment",
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    author = "Rothenberg, E. and Kueh, H. Y. and Hosokawa, H. and Ng, K. K. H. and Mehta, A. and Pease, S. S. and Romero-Wolf, M. and Ungerbäck, J. and Wang, X. and Yui, M. A. and Zeng, W. B. and Elowitz, M. B. and Mortazavi, A.",
    title = "Dissecting the transcriptional regulatory network for early T-cell commitment",
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    author = "Lin, Yihan and Elowitz, Michael B.",
    title = "Central Dogma Goes Digital",
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    url = "https://resolver.caltech.edu/CaltechAUTHORS:20160321-104414916",
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    issn = "1097-2765",
    doi = "10.1016/j.molcel.2016.03.005",
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    author = "Bintu, Lacramioara and Yong, John and Antebi, Yaron E. and McCue, Kayla and Kazuki, Yasuhiro and Uno, Narumi and Oshimura, Mitsuo and Elowitz, Michael B.",
    title = "Dynamics of epigenetic regulation at the single-cell level",
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    author = "Lin, Yihan and Sohn, Chang Ho and Dalal, Chiraj K. and Cai, Long and Elowitz, Michael B.",
    title = "Combinatorial gene regulation by modulation of relative pulse timing",
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    author = "Kim, Daniel H. and Marinov, Georgi K. and Pepke, Shirley and Singer, Zakary S. and He, Peng and Williams, Brian and Schroth, Gary P. and Elowitz, Michael B. and Wold, Barbara J.",
    title = "Single-Cell Transcriptome Analysis Reveals Dynamic Changes in lncRNA Expression during Reprogramming",
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    author = "Markson, Joseph S. and Elowitz, Michael B.",
    title = "Synthetic Biology of Multicellular Systems: New Platforms and Applications for Animal Cells and Organisms",
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    author = "Sanghez, Valentina and Kee, Dustin and Beuder, Steven and Rux, Danielle and Osawa, Mitsujiro and Markson, Joe and Elowitz, Michael and Kyba, Michael and Iacobino, Michelina",
    title = "HoxA3 Controls Notch Pathway to Repress Blood Development",
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    author = "Levine, Joe H. and Elowitz, Michael B.",
    title = "Polyphasic feedback enables tunable cellular timers",
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    doi = "10.1016/j.cub.2014.08.030",
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    author = "LeBon, Lauren and Lee, Tom V. and Jafar-Nejad, Hamed and Sprinzak, David and Elowitz, Michael B.",
    title = "Fringe proteins modulate Notch-ligand cis and trans interactions to specify signaling states",
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    doi = "10.7554/eLife.02950",
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    author = "Dalal, Chiraj K. and Cai, Long and Lin, Yihan and Rahbar, Kasra and Elowitz, Michael B.",
    title = "Pulsatile Dynamics in the Yeast Proteome",
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    author = "Kueh, Hao Yuan and Elowitz, Michael B. and Rothenberg, Ellen V.",
    title = "Macrophage and T-cell fate control: Insights from tracking transcription factor dynamics in single cells",
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    doi = "10.1016/j.exphem.2014.07.054",
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    author = "Singer, Zakary S. and Yong, John and Tischler, Julia and Hackett, Jamie A. and Altinok, Alphan and Surani, M. Azim and Cai, Long and Elowitz, Michael B.",
    title = "Dynamic Heterogeneity and DNA Methylation in Embryonic Stem Cells",
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    author = "Tan, Frederick E. and Elowitz, Michael B.",
    title = "Brf1 posttranscriptionally regulates pluripotency and differentiation responses downstream of Erk MAP kinase",
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    author = "Church, George M. and Elowitz, Michael B. and Smolke, Christina D. and Voigt, Christopher A. and Weiss, Ron",
    title = "Realizing the potential of synthetic biology",
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    author = "Levine, Joe H. and Lin, Yihan and Elowitz, Michael B.",
    title = "Functional Roles of Pulsing in Genetic Circuits",
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    author = "Kueh, Hao Yuan and Champhekhar, Ameya and Nutt, Stephen L. and Elowitz, Michael B. and Rothenberg, Ellen V.",
    title = "Positive Feedback Between PU.1 and the Cell Cycle Controls Myeloid Differentiation",
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    doi = "10.1038/ng.1048",
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    title = "Measuring single-cell gene expression dynamics in bacteria using fluorescence time-lapse microscopy",
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    author = "Levine, Joe H. and Fontes, Michael E. and Dworkin, Jonathan and Elowitz, Michael B.",
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    author = "Locke, James C. W. and Young, Jonathan W. and Fontes, Michelle and Hernández Jiménez, María Jesύs and Elowitz, Michael B.",
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    author = "Sen, Shaunak and Garcia-Ojalvo, Jordi and Elowitz, Michael B.",
    title = "Dynamical Consequences of Bandpass Feedback Loops in a Bacterial Phosphorelay",
    year = "2011",
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    doi = "10.1371/journal.pone.0025102",
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    author = "Nandagopal, Nagarajan and Elowitz, Michael B.",
    title = "Synthetic Biology: Integrated Gene Circuits",
    year = "2011",
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    doi = "10.1126/science.1207084",
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    author = "Sprinzak, David and Lakhanpal, Amit and LeBon, Lauren and Garcia-Ojalvo, Jordi and Elowitz, Michael B.",
    title = "Mutual Inactivation of Notch Receptors and Ligands Facilitates Developmental Patterning",
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    doi = "10.1371/journal.pcbi.1002069",
    volume = "7",
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    author = "Young, Jonathan W. and Elowitz, Michael B.",
    title = "Mixed Messages: How Bacteria Resolve Conflicting Signals",
    year = "2011",
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    doi = "10.1016/j.molcel.2011.05.005",
    volume = "42",
    number = "4",
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    author = "Elowitz, Michael B. and Lim, Wendell A.",
    title = "Build life to understand it",
    year = "2010",
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    issn = "0028-0836",
    doi = "10.1038/468889a",
    volume = "468",
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    author = "Acar, Murat and Pando, Bernardo F. and Arnold, Frances H. and Elowitz, Michael B. and van Oudenaarden, Alexander",
    title = "A General Mechanism for Network-Dosage Compensation in Gene Circuits",
    year = "2010",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20101011-132711462",
    id = "https://authors.library.caltech.edu/records/f3ka4-5m529",
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    doi = "10.1126/science.1190544",
    volume = "329",
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    author = "Eldar, Avigdor and Elowitz, Michael B.",
    title = "Functional roles for noise in genetic circuits",
    year = "2010",
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    doi = "10.1038/nature09326",
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    author = "Cox, Robert Sidney, III and Dunlop, Mary J. and Elowitz, Michael B.",
    title = "A synthetic three-color scaffold for monitoring genetic regulation and noise",
    year = "2010",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20131107-140415442",
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    issn = "1754-1611",
    doi = "10.1186/1754-1611-4-10",
    volume = "4",
    pmcid = "PMC2918530",
    pages = "Art. No. 10"
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    author = "Sprinzak, David and Lakhanpal, Amit and LeBon, Lauren and Santat, Leah A. and Fontes, Michelle E. and Anderson, Graham A. and Garcia-Ojalvo, Jordi and Elowitz, Michael B.",
    title = "Cis-interactions between Notch and Delta generate mutually exclusive signalling states",
    year = "2010",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20100526-144631743",
    id = "https://authors.library.caltech.edu/records/pgs47-kh709",
    issn = "0028-0836",
    doi = "10.1038/nature08959",
    volume = "465",
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    author = "Çağatay, Tolga and Turcotte, Marc and Elowitz, Michael B. and Garcia-Ojalvo, Jordi and Süel, Gürol M.",
    title = "Architecture-Dependent Noise Discriminates Functionally Analogous Differentiation Circuits",
    year = "2009",
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    id = "https://authors.library.caltech.edu/records/36tpr-v6j20",
    issn = "0092-8674",
    doi = "10.1016/j.cell.2009.07.046",
    volume = "139",
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    author = "Eldar, Avigdor and Chary, Vasant K. and Xenopoulos, Panagiotis and Fontes, Michelle E. and Losón, Oliver C. and Dworkin, Jonathan and Piggot, Patrick J. and Elowitz, Michael B.",
    title = "Partial penetrance facilitates developmental evolution in bacteria",
    year = "2009",
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    id = "https://authors.library.caltech.edu/records/qx9qd-03y84",
    issn = "0028-0836",
    doi = "10.1038/nature08150",
    volume = "460",
    number = "7254",
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    author = "Locke, James C. W. and Elowitz, Michael B.",
    title = "Using movies to analyse gene circuit dynamics in single cells",
    year = "2009",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20200428-095144359",
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    issn = "1740-1526",
    doi = "10.1038/nrmicro2056",
    volume = "7",
    number = "5",
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    author = "Dunlop, Mary J. and Cox, Robert Sidney, III and Levine, Joseph H. and Murray, Richard M. and Elowitz, Michael B.",
    title = "Regulatory activity revealed by dynamic correlations in gene expression noise",
    year = "2008",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:DUNng08",
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    issn = "1061-4036",
    doi = "10.1038/ng.281",
    volume = "40",
    number = "12",
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    author = "Cai, Long and Dalal, Chiraj K. and Elowitz, Michael B.",
    title = "Frequency-modulated nuclear localization bursts coordinate gene regulation",
    year = "2008",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:CAInat08",
    id = "https://authors.library.caltech.edu/records/5b636-xfq63",
    issn = "0028-0836",
    doi = "10.1038/nature07292",
    volume = "455",
    number = "7212",
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    author = "Presser, Aviva and Elowitz, Michael B. and Kellis, Manolis and Kishony, Roy",
    title = "The evolutionary dynamics of the Saccharomyces cerevisiae protein interaction network after duplication",
    year = "2008",
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    issn = "0027-8424",
    doi = "10.1073/pnas.0707293105",
    volume = "105",
    number = "3",
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    author = "Rosenfeld, Nitzan and Young, Jonathan W. and Alon, Uri and Swain, Peter S. and Elowitz, Michael B.",
    title = "Accurate prediction of gene feedback circuit behavior from component properties",
    year = "2007",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20200428-095144474",
    id = "https://authors.library.caltech.edu/records/jms47-b5592",
    issn = "1744-4292",
    doi = "10.1038/msb4100185",
    volume = "3",
    pmcid = "PMC2132446",
    pages = "Art. No. 143"
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    author = "Cox, Robert Sidney, III and Surette, Michael G. and Elowitz, Michael B.",
    title = "Programming gene expression with combinatorial promoters",
    year = "2007",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20200428-095144189",
    id = "https://authors.library.caltech.edu/records/q2ge4-8h313",
    issn = "1744-4292",
    doi = "10.1038/msb4100187",
    volume = "3",
    pmcid = "PMC2132448",
    pages = "Art. No. 145"
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    author = "Süel, Gürol M. and Kulkarni, Rajan P. and Dworkin, Jonathan and Garcia-Ojalvo, Jordi and Elowitz, Michael B.",
    title = "Tunability and Noise Dependence in Differentiation Dynamics",
    year = "2007",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20141114-080404724",
    id = "https://authors.library.caltech.edu/records/t1g1s-xgm65",
    issn = "0036-8075",
    doi = "10.1126/science.1137455",
    volume = "315",
    number = "5819",
    pages = "1716-1719"
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    author = "Rosenfeld, Nitzan and Perkins, Theodore J. and Alon, Uri and Elowitz, Michael B. and Swain, Peter S.",
    title = "A Fluctuation Method to Quantify In Vivo Fluorescence Data",
    year = "2006",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20200428-123053062",
    id = "https://authors.library.caltech.edu/records/wps75-94303",
    issn = "0006-3495",
    doi = "10.1529/biophysj.105.073098",
    volume = "91",
    number = "2",
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@article{https://authors.library.caltech.edu/records/gsagm-5zn04,
    author = "Süel, Gürol M. and Garcia-Ojalvo, Jordi and Liberman, Louisa M. and Elowitz, Michael B.",
    title = "An excitable gene regulatory circuit induces transient cellular differentiation",
    year = "2006",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20200428-150756338",
    id = "https://authors.library.caltech.edu/records/gsagm-5zn04",
    issn = "0028-0836",
    doi = "10.1038/nature04588",
    volume = "440",
    number = "7083",
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    author = "Gor, Victoria and Elowitz, Michael and Bacarian, Tigran and Mjolsness, Eric",
    title = "Tracking Cell Signals in Fluorescent Images",
    year = "2006",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:GORcvpr05",
    id = "https://authors.library.caltech.edu/records/15png-51w40",
    isbn = "0-7695-2372-2",
    doi = "10.1109/CVPR.2005.544",
    pages = "Art. No. 142"
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    author = "Sprinzak, David and Elowitz, Michael B.",
    title = "Reconstruction of genetic circuits",
    year = "2005",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20150325-092313161",
    id = "https://authors.library.caltech.edu/records/csxa2-bn725",
    issn = "0028-0836",
    doi = "10.1038/nature04335",
    volume = "438",
    number = "7067",
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    author = "Eldar, Avigdor and Elowitz, Michael",
    title = "Systems biology: Deviations in mating",
    year = "2005",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20150319-083605488",
    id = "https://authors.library.caltech.edu/records/8sxst-5nq97",
    issn = "0028-0836",
    doi = "10.1038/437631a",
    volume = "437",
    number = "7059",
    pages = "631-632"
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    author = "Rosenfeld, Nitzan and Young, Jonathan W. and Alon, Uri and Swain, Peter S. and Elowitz, Michael B.",
    title = "Gene Regulation at the Single-Cell Level",
    year = "2005",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20141117-154819881",
    id = "https://authors.library.caltech.edu/records/nhf6g-65r79",
    issn = "0036-8075",
    doi = "10.1126/science.1106914",
    volume = "307",
    number = "5717",
    pages = "1962-1965"
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    author = "Garcia-Ojalvo, Jordi and Elowitz, Michael B. and Strogatz, Steven H.",
    title = "Modeling a synthetic multicellular clock: Repressilators coupled by quorum sensing",
    year = "2004",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:GARpnas04",
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    issn = "0027-8424",
    doi = "10.1073/pnas.0307095101",
    volume = "101",
    number = "30",
    pmcid = "PMC503725",
    pages = "10955-10960"
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@article{https://authors.library.caltech.edu/records/y35w4-qpj73,
    author = "Lahav, Galit and Rosenfeld, Nitzan and Sigal, Alex and Geva-Zatorsky, Naama and Levine, Arnold J. and Elowitz, Michael B. and Alon, Uri",
    title = "Dynamics of the p53-Mdm2 feedback loop in individual cells",
    year = "2004",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20150408-095048891",
    id = "https://authors.library.caltech.edu/records/y35w4-qpj73",
    issn = "1061-4036",
    doi = "10.1038/ng1293",
    volume = "36",
    number = "2",
    pages = "147-150"
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@article{https://authors.library.caltech.edu/records/fcbtb-xyh19,
    author = "Overholtzer, Michael and Rao, Pulivarthi H. and Favis, Reyna and Lu, Xin-Yan and Elowitz, Michael B. and Barany, Francis and Ladanyi, Marc and Gorlick, Richard and Levine, Arnold J.",
    title = "The presence of p53 mutations in human osteosarcomas correlates with high levels of genomic instability",
    year = "2003",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:OVEpnas03",
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    issn = "0027-8424",
    doi = "10.1073/pnas.1934852100",
    volume = "100",
    number = "20",
    pmcid = "PMC208795",
    pages = "11547-11552"
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@article{https://authors.library.caltech.edu/records/fvem5-cka33,
    author = "Rosenfeld, Nitzan and Elowitz, Michael B. and Alon, Uri",
    title = "Negative Autoregulation Speeds the Response Times of Transcription Networks",
    year = "2002",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20200428-124412749",
    id = "https://authors.library.caltech.edu/records/fvem5-cka33",
    issn = "0022-2836",
    doi = "10.1016/s0022-2836(02)00994-4",
    volume = "323",
    number = "5",
    pages = "785-793"
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    author = "Swain, Peter S. and Elowitz, Michael B. and Siggia, Eric D.",
    title = "Intrinsic and extrinsic contributions to stochasticity in gene expression",
    year = "2002",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:SWApnas02",
    id = "https://authors.library.caltech.edu/records/z0ctt-h4446",
    issn = "0027-8424",
    doi = "10.1073/pnas.162041399",
    volume = "99",
    number = "20",
    pmcid = "PMC130539",
    pages = "12795-12800"
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@article{https://authors.library.caltech.edu/records/wsymf-b6c81,
    author = "Elowitz, Michael B. and Levine, Arnold J. and Siggia, Eric D. and Swain, Peter S.",
    title = "Stochastic Gene Expression in a Single Cell",
    year = "2002",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:20200428-125210088",
    id = "https://authors.library.caltech.edu/records/wsymf-b6c81",
    issn = "0036-8075",
    doi = "10.1126/science.1070919",
    volume = "297",
    number = "5584",
    pages = "1183-1186"
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    author = "Elowitz, Michael B. and Leibler, Stanislas",
    title = "A synthetic oscillatory network of transcriptional regulators",
    year = "2000",
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    issn = "0028-0836",
    doi = "10.1038/35002125",
    volume = "403",
    number = "6767",
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    author = "Elowitz, Michael B. and Surette, Michael G. and Wolf, Pierre-Etienne and Stock, Jeffrey B. and Leibler, Stanislas",
    title = "Protein Mobility in the Cytoplasm of Escherichia coli",
    year = "1999",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:ELOjbact99",
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    issn = "0021-9193",
    volume = "181",
    number = "1",
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    author = "Surrey, Thomas and Elowitz, Michael B. and Wolf, Pierre-Etienne and Yang, Feng and Nédélec, François and Shokat, Kevan and Leibler, Stanislas",
    title = "Chromophore-assisted light inactivation and self-organization of microtubules and motors",
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    url = "https://resolver.caltech.edu/CaltechAUTHORS:SURpnas98",
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    volume = "95",
    number = "8",
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    title = "Photoactivation turns green fluorescent protein red",
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    number = "10",
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    author = "Bourdieu, L. and Duke, T. and Elowitz, M. B. and Winkelmann, D. A. and Leibler, S. and Libchaber, A.",
    title = "Spiral Defects in Motility Assays: A Measure of Motor Protein Force",
    year = "1995",
    url = "https://resolver.caltech.edu/CaltechAUTHORS:BOUprl95",
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    issn = "0031-9007",
    doi = "10.1103/PhysRevLett.75.176",
    volume = "75",
    number = "1",
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