Nakahira, Yorie; Liu, Quanying et al. (2021) Diversity-enabled sweet spots in layered architectures and speed–accuracy trade-offs in sensorimotor control Proceedings of the National Academy of Sciences of the United States of America; Vol. 118; No. 22;

Ho, Dimitar; Le, Hoang M. et al. (2021) Online Robust Control of Nonlinear Systems with Large Uncertainty Proceedings of Machine Learning Research; Vol. 130; 24th International Conference on Artificial Intelligence and Statistics (AISTATS), 13-15 April 2021 , San Diego, CA

Rochart, Roger; Liu, Quanying et al. (2020) Heart rate and blood pressure decreases after a motor task in pre‐symptomatic AD Alzheimer's & Dementia; Vol. 16; No. S5, pt 2;

Liu, Quanying; Nakahira, Yorie et al. (2020) WheelCon: A Wheel Control-Based Gaming Platform for Studying Human Sensorimotor Control Journal of Visualized Experiments; No. 162;

Khazaei, Tahmineh; Williams, Rory L. et al. (2020) Metabolic multistability and hysteresis in a model aerobe-anaerobe microbiome community Science Advances; Vol. 6; No. 33;

Keating, Sarah M.; Waltemath, Dagmar et al. (2020) SBML Level 3: an extensible format for the exchange and reuse of biological models Molecular Systems Biology; Vol. 16; No. 8;

Siami, Milad; Motee, Nader et al. (2020) Fundamental Limits and Tradeoffs in Autocatalytic Pathways IEEE Transactions on Automatic Control; Vol. 65; No. 2;

Wang, Yuh-Shyang; Matni, Nikolai et al. (2019) A System Level Approach to Controller Synthesis IEEE Transactions on Automatic Control; Vol. 64; No. 10;

Alderson, David L.; Doyle, John C. et al. (2019) Lessons from "a first-principles approach to understanding the internet's router-level topology" ACM SIGCOMM Computer Communication Review; Vol. 49; No. 5;

Olsman, Noah; Baetica, Ania-Ariadna et al. (2019) Hard Limits and Performance Tradeoffs in a Class of Antithetic Integral Feedback Networks Cell Systems; Vol. 9; No. 1;

Anderson, James; Doyle, John C. et al. (2019) System level synthesis Annual Reviews in Control; Vol. 47;

Olsman, Noah; Xiao, Fangzhou et al. (2019) Architectural Principles for Characterizing the Performance of Antithetic Integral Feedback Networks iScience; Vol. 14;

Mavroudis, Panteleimon D.; Scheff, Jeremy D. et al. (2019) Impact of Stochasticity and Its Control on a Model of the Inflammatory Response Computation; Vol. 7;

Wu, Ning; Bi, Yingjie et al. (2018) A Control-Theoretic Approach to In-Network Congestion Management IEEE/ACM Transactions on Networking; Vol. 26; No. 6;

Wang, Yuh-Shyang; Matni, Nikolai et al. (2018) Separable and Localized System Level Synthesis for Large-Scale Systems IEEE Transactions on Automatic Control; Vol. 63; No. 12;

Olsman, Noah; Xiao, Fangzhou et al. (2018) Evaluation of Hansen et al.: Nuance Is Crucial in Comparisons of Noise Cell Systems; Vol. 7; No. 4;

Leong, Yoke Peng; Doyle, John C. (2017) Effects of Delays, Poles, and Zeros on Time Domain Waterbed Tradeoffs and Oscillations IEEE Control Systems Letters; Vol. 1; No. 1;

Csete, Marie; Doyle, John (2017) 15th International Conference on Complex Acute Illness (ICCAI) Society for Complex Acute Illness: August 10–14, 2016 at the Beckman Institute, Caltech Journal of Critical Care; Vol. 38; 15th International Conference on Complex Acute Illness (ICCAI) Society for Complex Acute Illness, August 10-14, 2016 , Pasadena, CA

Jonsson, Vanessa D.; Blakely, Collin M. et al. (2017) Novel computational method for predicting polytherapy switching strategies to overcome tumor heterogeneity and evolution Scientific Reports; Vol. 7;

Das, Anup; Sampson, Aaron L. et al. (2017) Interpretation of the Precision Matrix and Its Application in Estimating Sparse Brain Connectivity during Sleep Spindles from Human Electrocorticography Recordings Neural Computation; Vol. 29; No. 3;

Kempes, Christopher P.; Wang, Lawrence et al. (2016) Evolutionary tradeoffs in cellular composition across diverse bacteria ISME Journal; Vol. 10; No. 9;

Doyle, John C. (2016) Even Noisy Responses Can Be Perfect If Integrated Properly Cell Systems; Vol. 2; No. 2;

Nair, Jayakrishnan; Andreasson, Martin et al. (2016) On Channel Failures, File Fragmentation Policies, and Heavy-Tailed Completion Times IEEE/ACM Transactions on Networking; Vol. 24; No. 1;

Lamperski, Andrew; Doyle, John C. (2015) The ℋ_2 Control Problem for Quadratically Invariant Systems With Delays IEEE Transactions on Automatic Control; Vol. 60; No. 7;

Sojoudi, Somayeh; Low, Steven H. et al. (2014) Buffering Dynamics and Stability of Internet Congestion Controllers IEEE/ACM Transactions on Networking; Vol. 22; No. 6;

Csete, Marie; Doyle, John (2014) The mathematician's control toolbox for management of type 1 diabetes Interface Focus; Vol. 4; No. 5;

Li, Na; Cruz, Jerry et al. (2014) Robust efficiency and actuator saturation explain healthy heart rate control and variability Proceedings of the National Academy of Sciences of the United States of America; Vol. 111; No. 33;

Matni, Nikolai; Leong, Yoke Peng et al. (2014) Resilience in Large Scale Distributed Systems Procedia Computer Science; Vol. 28; 2014 Conference on Systems Engineering Research, March 21-22, 2014 , Redondo Beach, CA

Caporale, Lynn Helena; Doyle, John (2013) In Darwinian evolution, feedback from natural selection leads to biased mutations Annals of the New York Academy of Sciences; Vol. 1305; Series.Annals of the New York Academy of Sciences ;

Scheff, Jeremy D.; Mavroudis, Panteleimon D. et al. (2013) A multiscale modeling approach to inflammation: A case study in human endotoxemia Journal of Computational Physics; Vol. 244;

Chen, Lijun; Ho, Tracey et al. (2012) Congestion Control for Multicast Flows With Network Coding IEEE Transactions on Information Theory; Vol. 58; No. 9; 26th IEEE International Conference on Computer Communications, 6-12 May 2007 , Anchorage, AK

Namas, Rami; Zamora, Ruben et al. (2012) Sepsis: Something old, something new, and a systems view Journal of Critical Care; Vol. 27; No. 3;

Page, Morgan T.; Alderson, David et al. (2011) The magnitude distribution of earthquakes near Southern California faults Journal of Geophysical Research B; Vol. 116;

Doyle, John C.; Csete, Marie (2011) Architecture, constraints, and behavior Proceedings of the National Academy of Sciences of the United States of America; Vol. 108; No. S3;

Chandra, Fiona A.; Gayme, Dennice F. et al. (2011) Robustness, Optimization, and Architectures European Journal of Control; Vol. 17; No. 5-6;

Chandra, Fiona A.; Buzi, Gentian et al. (2011) Glycolytic Oscillations and Limits on Robust Efficiency Science; Vol. 333; No. 6039;

Gayme, Dennice F.; McKeon, Beverley J. et al. (2011) Amplification and nonlinear mechanisms in plane Couette flow Physics of Fluids; Vol. 23; No. 6;

Buzi, Gentian; Topcu, Ufuk et al. (2011) Analysis of autocatalytic networks in biology Automatica; Vol. 47; No. 6;

Chen, Lijun; Low, Steven H. et al. (2011) Cross-layer design in multihop wireless networks Computer Networks; Vol. 55; No. 2;

Sandberg, Henrik; Delvenne, Jean-Charles et al. (2011) On Lossless Approximations, the Fluctuation-Dissipation Theorem, and Limitations of Measurements IEEE Transactions on Automatic Control; Vol. 56; No. 2;

Lavaei, Javad; Babakhani, Aydin et al. (2011) Solving Large-Scale Hybrid Circuit-Antenna Problems IEEE Transactions on Circuits and Systems I: Regular Papers; Vol. 58; No. 2;

Chen, Lijun; Low, Steven H. et al. (2010) Random Access Game and Medium Access Control Design IEEE/ACM Transactions on Networking; Vol. 18; No. 4;

Alderson, David L.; Doyle, John C. (2010) Contrasting Views of Complexity and Their Implications For Network-Centric Infrastructures IEEE Transactions on Systems Man and Cybernetics - Part A Systems and Humans; Vol. 40; No. 4; 2007 IEEE International Conference on Systems, Man and Cybernetics, October 7–10, 2007 , Montreal, QC, Canada

Gayme, D. F.; McKeon, B. J. et al. (2010) A streamwise constant model of turbulence in plane Couette flow Journal of Fluid Mechanics; Vol. 665;

Willinger, Walter; Alderson, David et al. (2009) Mathematics and the Internet: A Source of Enormous Confusion and Great Potential Notices of the American Mathematical Society; Vol. 56; No. 5;

Bowman, David M. J. S.; Balch, Jennifer K. et al. (2009) Fire in the Earth system Science; Vol. 324; No. 5926;

Bohland, Jason; Wu, Caizhi et al. (2009) A proposal for a coordinated effort for the determination of brainwide neuroanatomical connectivity in model organisms at a mesoscopic scale PLoS Computational Biology; Vol. 5; No. 3;

Arkin, Adam; Doyle, John (2008) Appreciation of the Machinations of the Blind Watchmaker IEEE Transactions on Automatic Control; Vol. 53; No. Specia;

Doyle, John; Csete, Marie (2007) Rules of engagement Nature; Vol. 446; No. 7138;

Martins, Nuno C.; Dahleh, Munther A. et al. (2007) Fundamental Limitations of Disturbance Attenuation in the Presence of Side Information IEEE Transactions on Automatic Control; Vol. 52; No. 1;

Chiang, Mung; Low, Steven H. et al. (2007) Layering as Optimization Decomposition: A Mathematical Theory of Network Architectures Proceedings of the IEEE; Vol. 95; No. 1;

Kurata, Hiroyuki; El-Samad, Hana et al. (2006) Module-Based Analysis of Robustness Tradeoffs in the Heat Shock Response System PLOS Computational Biology; Vol. 2; No. 7;

El-Samad, Hana; Prajna, Stephen et al. (2006) Advanced methods and algorithms for biological networks analysis Proceedings of the IEEE; Vol. 94; No. 4;

Moritz, Max A.; Morais, Marco E. et al. (2005) Wildfires, complexity, and highly optimized tolerance Proceedings of the National Academy of Sciences of the United States of America; Vol. 102; No. 50;

Tanaka, R.; Csete, M. et al. (2005) Highly optimised global organisation of metabolic networks Systems Biology; Vol. 152; No. 4; 1st International Conference on Foundations of Systems Biology in Engineering (FOSBE 2005), Aug. 07-10, 2005 , Santa Barbara, CA

Alderson, David; Li, Lun et al. (2005) Understanding Internet topology: principles, models, and validation IEEE/ACM Transactions on Networking; Vol. 13; No. 6;

Doyle, John; Csete, Marie (2005) Motifs, Control, and Stability PLoS Biology; Vol. 3; No. 11;

Brookings, Ted; Carlson, J. M. et al. (2005) Three mechanisms for power laws on the Cayley tree Physical Review E; Vol. 72; No. 5;

Doyle, John C.; Anderson, David L. et al. (2005) The "robust yet fragile" nature of the Internet Proceedings of the National Academy of Sciences of the United States of America; Vol. 102; No. 41;

Manning, M.; Carlson, J. M. et al. (2005) Highly optimized tolerance and power laws in dense and sparse resource regimes Physical Review E; Vol. 72; No. 1;

Wang, Jiantao; Li, Lun et al. (2005) Cross-layer optimization in TCP/IP networks IEEE/ACM Transactions on Networking; Vol. 13; No. 3;

El-Samad, H.; Kurata, H. et al. (2005) Surviving heat shock: Control strategies for robustness and performance Proceedings of the National Academy of Sciences of the United States of America; Vol. 102; No. 8;

Paganini, Fernando; Wang, Zhikui et al. (2005) Congestion control for high performance, stability, and fairness in general networks IEEE/ACM Transactions on Networking; Vol. 13; No. 1;

Jin, Cheng; Wei, David X. et al. (2005) FAST TCP: from theory to experiments IEEE Network; Vol. 19; No. 1;

Shapiro, Bruce E.; Hucka, Michael et al. (2004) MathSBML: a package for manipulating SBML-based biological models Bioinformatics; Vol. 20; No. 16;

Doyle, John; Csete, Marie (2004) Imitation of life: How biology is inspiring computing [Book Review] Nature; Vol. 431; No. 7011;

Stelling, Jörg; Sauer, Uwe et al. (2004) Robustness of Cellular Functions Cell; Vol. 118; No. 6;

Papachristodoulou, Antonis; Li, Lun et al. (2004) Methodological frameworks for large-scale network analysis and design ACM SIGCOMM Computer Communication Review; Vol. 34; No. 3;

Hucka, M.; Finney, A. et al. (2004) Evolving a lingua franca and associated software infrastructure for computational systems biology: the Systems Biology Markup Language (SBML) project Systems Biology; Vol. 1; No. 1;

Low, Steven H.; Paganini, Fernando et al. (2003) Linear stability of TCP/RED and a scalable control Computer Networks; Vol. 43; No. 5;

Sauro, Herbert M.; Hucka, Michael et al. (2003) Next Generation Simulation Tools: The Systems Biology Workbench and BioSPICE Integration OMICS: A Journal of Integrative Biology; Vol. 7; No. 4;

Hucka, M.; Finney, A. et al. (2003) The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models Bioinformatics; Vol. 19; No. 4;

Alderson, David; Doyle, John et al. (2003) Toward an Optimization-Driven Framework for Designing and Generating Realistic Internet Topologies ACM SIGCOMM Computer Communication Review; Vol. 33; No. 1;

Gilman, Alfred G.; Simon, Melvin I. et al. (2002) Overview of the Alliance for Cellular Signaling Nature; Vol. 420; No. 6916;

Reynolds, David; Carlson, J. M. et al. (2002) Design degrees of freedom and mechanisms for complexity Physical Review E; Vol. 66; No. 1;

Csete, Marie E.; Doyle, John C. (2002) Reverse Engineering of Biological Complexity Science; Vol. 295; No. 5560;

Carlson, J. M.; Doyle, John (2002) Complexity and robustness Proceedings of the National Academy of Sciences of the United States of America; Vol. 99; No. Suppl.;

Zhou, Tong; Carlson, J. M. et al. (2002) Mutation, specialization, and hypersensitivity in highly optimized tolerance Proceedings of the National Academy of Sciences of the United States of America; Vol. 99; No. 4;

Low, Steven H.; Paganini, Fernando et al. (2002) Internet congestion control IEEE Control Systems Magazine; Vol. 22; No. 1;

Tangmunarunkit, Hongsuda; Doyle, John et al. (2001) Does AS size determine degree in as topology? ACM SIGCOMM Computer Communication Review; Vol. 31; No. 5;

Doyle, John (2001) Beyond the spherical cow Nature; Vol. 411; No. 6834;

Robert, Carl; Carlson, J. M. et al. (2001) Highly optimized tolerance in epidemic models incorporating local optimization and regrowth Physical Review E; Vol. 63; No. 5;

Doyle, John; Carlson, J. M. (2000) Power Laws, Highly Optimized Tolerance, and Generalized Source Coding Physical Review Letters; Vol. 84; No. 24;

Primbs, James A.; Nevistić, Vesna et al. (2000) A receding horizon generalization of pointwise min-norm controllers IEEE Transactions on Automatic Control; Vol. 45; No. 5;

Yi, Tau-Mu; Huang, Yun et al. (2000) Robust perfect adaptation in bacterial chemotaxis through integral feedback control Proceedings of the National Academy of Sciences of the United States of America; Vol. 97; No. 9;

Carlson, J. M.; Doyle, John (2000) Highly Optimized Tolerance: Robustness and Design in Complex Systems Physical Review Letters; Vol. 84; No. 11;

Becker, Carolyn L.; Doyle, John (1999) A necessary and sufficient minimality condition for uncertain systems IEEE Transactions on Automatic Control; Vol. 44; No. 10;

Carlson, J. M.; Doyle, John (1999) Highly optimized tolerance: A mechanism for power laws in designed systems Physical Review E; Vol. 60; No. 2;

Lundström, Petter; Skogestad, Sigurd et al. (1999) Two-degree-of-freedom controller design for an ill-conditioned distillation process using µ-synthesis IEEE Transactions on Control Systems Technology; Vol. 7; No. 1;

Lu, Wei-Min; Doyle, John C. (1997) Robustness analysis and synthesis for nonlinear uncertain systems IEEE Transactions on Automatic Control; Vol. 42; No. 12;

Young, Peter M.; Doyle, John C. (1997) A lower bound for the mixed µ problem IEEE Transactions on Automatic Control; Vol. 42; No. 1;

Beck, Carolyn L.; Doyle, John et al. (1996) Model reduction of multidimensional and uncertain systems IEEE Transactions on Automatic Control; Vol. 41; No. 10;

Doyle, John; Murray, Richard (1996) Robust Nonlinear Control Theory with Applications to Aerospace Vehicles IFAC Proceedings Volumes; Vol. 29; No. 1; 13th Triennial IFAC World Congress, 30 June-5 July 1996 , San Francisco, CA

Young, Peter M.; Doyle, John C. (1996) Properties of the mixed μ problem and its bounds IEEE Transactions on Automatic Control; Vol. 41; No. 1;

Lu, Wei-Min; Zhou, Kemin et al. (1996) Stabilization of uncertain linear systems: an LFT approach IEEE Transactions on Automatic Control; Vol. 41; No. 1;

Lu, Wei-Min; Doyle, John C. (1995) H∞ control of nonlinear systems: a convex characterization IEEE Transactions on Automatic Control; Vol. 40; No. 9;

Balas, Gary J.; Doyle, John C. (1994) Robustness and performance trade-offs in control design for flexible structures IEEE Transactions on Control Systems Technology; Vol. 2; No. 4;

Lu, Wei-Min; Doyle, John C. (1994) ℋ∞ control of nonlinear systems via output feedback: controller parameterization IEEE Transactions on Automatic Control; Vol. 39; No. 12;

Zhou, Kemin; Glover, Keith et al. (1994) Mixed H_2 and H∞ performance objectives. I. Robust performance analysis IEEE Transactions on Automatic Control; Vol. 39; No. 8;

Doyle, John; Zhou, Kemin et al. (1994) Mixed H_2 and H∞ performance objectives. II. Optimal control IEEE Transactions on Automatic Control; Vol. 39; No. 8;

Braatz, Richard P.; Young, Peter M. et al. (1994) Computational complexity of μ calculation IEEE Transactions on Automatic Control; Vol. 39; No. 5;

Cortelezzi, L.; Leonard, A. et al. (1994) An example of active circulation control of the unsteady separated flow past a semi-infinite plate Journal of Fluid Mechanics; Vol. 260;

Packard, A.; Doyle, J. (1993) The complex structured singular value Automatica; Vol. 29; No. 1;

Smith, Roy S.; Doyle, John C. (1992) Model validation: a connection between robust control and identification IEEE Transactions on Automatic Control; Vol. 37; No. 7;

Glover, K.; Limebeer, D. J. N. et al. (1991) A Characterization of all Solutions to the Four Block General Distance Problem SIAM Journal on Control and Optimization; Vol. 29; No. 2;

Fan, Michael K. H.; Tits, André L. et al. (1991) Robustness in the presence of mixed parametric uncertainty and unmodeled dynamics IEEE Transactions on Automatic Control; Vol. 36; No. 1;

Green, Michael; Glover, Keith et al. (1990) A J-Spectral Factorization Approach to ℋ∞ Control SIAM Journal on Control and Optimization; Vol. 28; No. 6;

Balas, Gary J.; Doyle, John C. (1990) Identification of flexible structures for robust control IEEE Control Systems Magazine; Vol. 10; No. 4;

Packard, Andy; Doyle, John (1990) Quadratic stability with real and complex perturbations IEEE Transactions on Automatic Control; Vol. 35; No. 2;

Doyle, John C.; Glover, Keith et al. (1989) State-space solutions to standard H2 and H∞ control problems IEEE Transactions on Automatic Control; Vol. 34; No. 8;

Skogestad, Sigurd; Morari, Manfred et al. (1988) Robust control of ill-conditioned plants: high-purity distillation IEEE Transactions on Automatic Control; Vol. 33; No. 12;

Francis, Bruce A.; Doyle, John C. (1987) Linear Control Theory with an ℋ∞ Optimality Criterion SIAM Journal on Control and Optimization; Vol. 25; No. 4;

Doyle, J. C.; Konar, A. F. et al. (1982) Digikon and Honey-X: Interative packages for control system analysis and design IEEE Control Systems Magazine; Vol. 2; No. 4;

Doyle, John (1982) Analysis of feedback systems with structured uncertainties IEE Proceedings D Control Theory and Applications; Vol. 129; No. 6;

Doyle, John C.; Stein, Gunter (1981) Multivariable feedback design: Concepts for a classical/modern synthesis IEEE Transactions on Automatic Control; Vol. 26; No. 1;

Doyle, J. C.; Stein, G. (1979) Robustness with observers IEEE Transactions on Automatic Control; Vol. 24; No. 4;

Doyle, John C. (1978) Guaranteed margins for LQG regulators IEEE Transactions on Automatic Control; Vol. 23; No. 4;