Baird, Eldon Eugene

Article from CaltechAUTHORS

• Hawkins, Cheryl A. and Baird, Eldon E., et el. (2002) Analysis of hairpin polyamide complexes having DNA binding sites in close proximity; Journal of the American Chemical Society; Vol. 124; No. 43; 12689-12696; 10.1021/ja020335b
• Ehley, Jennifer A. and Melander, Christian, et el. (2002) Promoter Scanning for Transcription Inhibition with DNA-Binding Polyamides; Molecular and Cellular Biology; Vol. 22; No. 6; 1723-1733; PMCID PMC135605; 10.1128/MCB.22.6.1723-1733.2002
• Wurtz, Nicholas R. and Turner, James M., et el. (2001) Fmoc solid phase synthesis of polyamides containing pyrrole and imidazole amino acids; Organic Letters; Vol. 3; No. 8; 1201-1203; 10.1021/ol0156796
• Baliga, Ramesh and Baird, Eldon E., et el. (2001) Kinetic consequences of covalent linkage of DNA binding polyamides; Biochemistry; Vol. 40; No. 1; 3-8; 10.1021/bi0022339
• Nguyen-Hackley, Doan H. and Szewczyk, Jason W., et el. (2001) Alternative heterocycles for DNA recognition: an N-methylpyrazole/N-methylpyrrole pair specifies for A·T/T·A base pairs; Bioorganic and Medicinal Chemistry; Vol. 9; No. 1; 7-17; 10.1016/S0968-0896(00)00219-4
• Winston, Rachel L. and Ehley, Jennifer A., et el. (2000) Asymmetric DNA binding by a homodimeric bHLH protein; Biochemistry; Vol. 39; No. 31; 9092-9098; 10.1021/bi000947d
• Bremer, Ryan E. and Szewczyk, Jason W., et el. (2000) Recognition of the DNA minor groove by pyrrole-imidazole polyamides: comparison of desmethyl- and N-methylpyrrole; Bioorganic and Medicinal Chemistry; Vol. 8; No. 8; 1947-1955; 10.1016/S0968-0896(00)00145-0
• Hawkins, Cheryl A. and Peláez de Clairac, Rafael, et el. (2000) Controlling binding orientation in hairpin polyamide DNA complexes; Journal of the American Chemical Society; Vol. 122; No. 22; 5235-5243; 10.1021/ja0001198
• Simon, H. and Kittler, L., et el. (2000) Selective inhibition of DNA gyrase in vitro by a GC specific eight-ring hairpin polyamide at nanomolar concentration; FEBS Letters; Vol. 471; No. 2-3; 173-176; 10.1016/S0014-5793(00)01390-9
• Kielkopf, Clara L. and Bremer, Ryan M., et el. (2000) Structural Effects of DNA Sequence on T•A Recognition by Hydroxypyrrole/Pyrrole Pairs in the Minor Groove; Journal of Molecular Biology; Vol. 295; No. 3; 557-567; 10.1006/jmbi.1999.3364
• Urbach, Adam R. and Szewczyk, Jason W., et el. (1999) Sequence selectivity of 3-hydroxypyrrole/pyrrole ring pairings in the DNA minor groove; Journal of the American Chemical Society; Vol. 121; No. 50; 11621-11629
• Lenzmeier, Brian A. and Baird, Eldon E., et el. (1999) The tax protein-DNA interaction is essential for HTLV-I transactivation in vitro; Journal of Molecular Biology; Vol. 291; No. 4; 731-44; 10.1006/jmbi.1999.2969
• Dickinson, Liliane A. and Trauger, John W., et el. (1999) Anti-repression of RNA polymerase II transcription by pyrrole-imidazole polyamides; Biochemistry; Vol. 38; No. 33; 10801-10807; 10.1021/bi9912847
• Dickinson, Liliane A. and Trauger, John W., et el. (1999) Inhibition of Ets-1 DNA Binding and Ternary Complex Formation between Ets-1, NF-kappa B, and DNA by a Designed DNA-binding Ligand; Journal of Biological Chemistry; Vol. 274; No. 18; 12765-12773; 10.1074/jbc.274.18.12765
• Peláez Lamamie de Clairac, Rafael and Seel, Christian J., et el. (1999) NMR Characterization of the Aliphatic β/β Pairing for Recognition of A·T/T·A Base Pairs in the Minor Groove of DNA; Journal of the American Chemical Society; Vol. 121; No. 13; 2956-2964; 10.1021/ja983671u
• McBryant, Steven J. and Baird, Eldon E., et el. (1999) Minor groove DNA-protein contacts upstream of a tRNA gene detected with a synthetic DNA binding ligand; Journal of Molecular Biology; Vol. 286; No. 4; 973-981; 10.1006/jmbi.1999.2539
• Herman, David M. and Baird, Eldon E., et el. (1999) Tandem Hairpin Motif for Recognition in the Minor Groove of DNA by Pyrrole–Imidazole Polyamides; Chemistry: a European Journal; Vol. 5; No. 3; 975-983; 10.1002/(SICI)1521-3765(19990301)5:3<975::AID-CHEM975>3.0.CO;2-T
• Herman, David M. and Turner, James M., et el. (1999) Cycle polyamide motif for recognition of the minor groove of DNA; Journal of the American Chemical Society; Vol. 121; No. 6; 1121-1129; 10.1021/ja983206x
• Swalley, Susanne E. and Baird, Eldon E., et el. (1999) Effects of γ-Turn and β-Tail Amino Acids on Sequence-Specific Recognition of DNA by Hairpin Polyamides; Journal of the American Chemical Society; Vol. 121; No. 6; 1113-1120; 10.1021/ja9830905
• Pilch, Daniel S. and Poklar, Nataša, et el. (1999) The thermodynamics of polyamide-DNA recognition: hairpin polyamide binding in the minor groove of duplex DNA; Biochemistry; Vol. 38; No. 7; 2143-2151; 10.1021/bi982628g
• White, Sarah and Turner, James M., et el. (1999) Affinity and specificity of multiple hydroxypyrrole/pyrrole ring pairings for coded recognition of DNA; Journal of the American Chemical Society; Vol. 121; No. 1; 260-261; 10.1021/ja9830593
• Dickinson, Liliane A. and Gulizia, Richard J., et el. (1998) Inhibition of RNA polymerase II transcription in human cells by synthetic DNA-binding ligands; Proceedings of the National Academy of Sciences of the United States of America; Vol. 95; No. 22; 12890-12895; PMCID PMC23643; 10.1073/pnas.95.22.12890
• Kielkopf, Clara L. and White, Sarah, et el. (1998) A Structural Basis for Recognition of A·T and T·A Base Pairs in the Minor Groove of B-DNA; Science; Vol. 282; No. 5386; 111-115; 10.1126/science.282.5386.111
• Turner, James M. and Swalley, Susanne E., et el. (1998) Aliphatic/aromatic amino acid pairings for polyamide recognition in the minor groove of DNA; Journal of the American Chemical Society; Vol. 120; No. 25; 6219-6226; 10.1021/ja980147e
• Trauger, John W. and Baird, Eldon E., et el. (1998) Cooperative hairpin dimers for recognition of DNA by pyrrole-imidazole polyamides; Angewandte Chemie-International Edition In English; Vol. 37; No. 10; 1421-1423; 10.1002/(SICI)1521-3773(19980605)37:10<1421::AID-ANIE1421>3.0.CO;2-8
• Greenberg, William A. and Baird, Eldon E., et el. (1998) A comparison of H-pin and hairpin polyamide motifs for the recognition of the minor groove of DNA; Chemistry: a European Journal; Vol. 4; No. 5; 796-805; 10.1002/(SICI)1521-3765(19980515)4:5<796::AID-CHEM796>3.0.CO;2-G
• Trauger, John W. and Baird, Eldon E., et el. (1998) Recognition of 16 base pairs in the minor groove of DNA by a pyrrole-imidazole polyamide dimer; Journal of the American Chemical Society; Vol. 120; No. 14; 3534-3535; 10.1021/ja9800378
• Bremer, Ryan E. and Baird, Eldon E., et el. (1998) Inhibition of major-groove-binding proteins by pyrrole-imidazole polyamides with an Arg-Pro-Arg positive patch; Chemistry and Biology; Vol. 5; No. 3; 119-133; 10.1016/S1074-5521(98)90057-6
• Herman, David M. and Baird, Eldon E., et el. (1998) Stereochemical control of the DNA binding affinity, sequence specificity, and orientation preference of chiral hairpin polyamides in the minor groove; Journal of the American Chemical Society; Vol. 120; No. 7; 1382-1391; 10.1021/ja9737228
• Kielkopf, Clara L. and Baird, Eldon E., et el. (1998) Structural Basis for G•C Recognition in the DNA Minor Groove; Nature Structural Biology; Vol. 5; No. 2; 104-109; 10.1038/nsb0298-104
• White, Sarah and Szewczyk, Jason W., et el. (1998) Recognition of the four Watson-Crick base pairs in the DNA minor groove by synthetic ligands; Nature; Vol. 391; No. 6666; 468-471; 10.1038/35106
• Neely, Laura and Trauger, John W., et el. (1997) Importance of minor groove binding zinc fingers within the transcription factor IIIA-DNA complex; Journal of Molecular Biology; Vol. 274; No. 4; 439-445; 10.1006/jmbi.1997.1411
• Swalley, Susanne E. and Baird, Eldon E., et el. (1997) A pyrrole-imidazole polyamide motif for recognition of eleven base pair sequences in the minor groove of DNA; Chemistry: a European Journal; Vol. 3; No. 10; 1600-1607; 10.1002/chem.19970031009
• White, Sarah and Baird, Eldon E., et el. (1997) Orientation Preferences of Pyrrole−Imidazole Polyamides in the Minor Groove of DNA; Journal of the American Chemical Society; Vol. 119; No. 38; 8756-8765; 10.1021/ja971569b
• Turner, James M. and Baird, Eldon E., et el. (1997) Recognition of seven base pair sequences in the minor groove of DNA by ten-ring pyrrole-imidazole polyamide hairpins; Journal of the American Chemical Society; Vol. 119; No. 33; 7636-7644; 10.1021/ja971208w
• White, Sarah and Baird, Eldon E., et el. (1997) On the pairing rules for recognition in the minor groove of DNA by pyrrole-imidazole polyamides; Chemistry and Biology; Vol. 4; No. 8; 569-578; 10.1016/S1074-5521(97)90243-X
• Swalley, Susanne E. and Baird, Eldon E., et el. (1997) Discrimination of 5'-GGGG-3',5'-GCGC-3', and 5'-GGCC-3' sequences in the minor groove of DNA by eight-ring hairpin polyamides; Journal of the American Chemical Society; Vol. 119; No. 30; 6953-6961; 10.1021/ja971184t
• Gottesfeld, Joel M. and Neely, Laura, et el. (1997) Regulation of gene expression by small molecules; Nature; Vol. 387; No. 6629; 202-205; 10.1038/387202a0
• White, Sarah and Baird, Eldon E., et el. (1996) Effects of the A·T/T·A Degeneracy of Pyrrole−Imidazole Polyamide Recognition in the Minor Groove of DNA; Biochemistry; Vol. 35; No. 38; 12532-12537; 10.1021/bi960744i
• Swalley, Susanne E. and Baird, Eldon E., et el. (1996) Recognition of a 5'-(A,T)GGG(A,T)_2-3' Sequence in the Minor Groove of DNA by an Eight-Ring Hairpin Polyamide; Journal of the American Chemical Society; Vol. 118; No. 35; 8198-8206; 10.1021/ja9611598
• Trauger, John W. and Baird, Eldon E., et el. (1996) Recognition of DNA by designed ligands at subnanomolar concentrations; Nature; Vol. 382; No. 6591; 559-561; 10.1038/382559a0
• Pilch, Daniel S. and Poklar, Natasa, et el. (1996) Binding of a hairpin polyamide in the minor groove of DNA: Sequence-specific enthalpic discrimination; Proceedings of the National Academy of Sciences of the United States of America; Vol. 93; No. 16; 8306-8311; PMCID PMC38666
• Szewczyk, Jason W. and Baird, Eldon E., et el. (1996) Cooperative triple-helix formation via a minor groove dimerization domain; Journal of the American Chemical Society; Vol. 118; No. 28; 6778-6779; 10.1021/ja960831y
• Kelly, James J. and Baird, Eldon E., et el. (1996) Binding site size limit of the 2:1 pyrrole-imidazole polyamide-DNA motif; Proceedings of the National Academy of Sciences of the United States of America; Vol. 93; No. 14; 6981-6985; PMCID PMC38920
• Parks, Michelle E. and Baird, Eldon E., et el. (1996) Recognition of 5'-(A,T)GG(A,T)_2-3' Sequences in the Minor Groove of DNA by Hairpin Polyamides; Journal of the American Chemical Society; Vol. 118; No. 26; 6153-6159; 10.1021/ja9607289
• Parks, Michelle E. and Baird, Eldon E., et el. (1996) Optimization of the hairpin polyamide design for recognition of the minor groove of DNA; Journal of the American Chemical Society; Vol. 118; No. 26; 6147-6152; 10.1021/ja960721r
• Baird, Eldon E. and Dervan, Peter B. (1996) Solid phase synthesis of polyamides containing imidazole and pyrrole amino acids; Journal of the American Chemical Society; Vol. 118; No. 26; 6141-6146; 10.1021/ja960720z
• Trauger, John W. and Baird, Eldon E., et el. (1996) Extension of sequence-specific recognition in the minor groove of DNA by pyrrole-imidazole polyamides to 9-13 base pairs; Journal of the American Chemical Society; Vol. 118; No. 26; 6160-6166; 10.1021/ja960726o
• Szewczyk, Jason W. and Baird, Eldon E., et el. (1996) Sequence-specific recognition of DNA by a major and minor groove binding ligand; Angewandte Chemie International Edition; Vol. 35; No. 13-14; 1487-1489; 10.1002/anie.199614871
• Trauger, John W. and Baird, Eldon E., et el. (1996) Extended hairpin polyamide motif for sequence-specific recognition in the minor groove of DNA; Chemistry and Biology; Vol. 3; No. 5; 369-377; 10.1016/S1074-5521(96)90120-9