<h1 id="richard-n.-merkin-institute-for-translational-research"><a href="./">Richard N. Merkin Institute for Translational Research</a></h1> <h3 id="articles-from-caltechauthors">Articles from <a href="https://authors.library.caltech.edu">CaltechAUTHORS</a></h3> <ul> <li>Cervantes Rincón, Tomás; Kapoor, Tania; et al. (2024) <a href="https://authors.library.caltech.edu/records/6k35y-2yx67">Human antibodies in Mexico and Brazil neutralizing tick-borne flaviviruses</a>; Cell Reports; Vol. 43; No. 6; 114298; <a href="https://doi.org/10.1016/j.celrep.2024.114298">10.1016/j.celrep.2024.114298</a></li> <li>Li, Hongyi R.; Harb, Manwal; et al. (2024) <a href="https://authors.library.caltech.edu/records/0gp3y-w1j85">Engineering viral vectors for acoustically targeted gene delivery</a>; Nature Communications; Vol. 15; 4924; <a href="https://doi.org/10.1038/s41467-024-48974-y">10.1038/s41467-024-48974-y</a></li> <li>Ramadan, Sherif; Mayieka, Morgan; et al. (2024) <a href="https://authors.library.caltech.edu/records/apbnj-j0165">Recent advances in the synthesis of extensive libraries of heparan sulfate oligosaccharides for structure–activity relationship studies</a>; Current Opinion in Chemical Biology; Vol. 80; 102455; <a href="https://doi.org/10.1016/j.cbpa.2024.102455">10.1016/j.cbpa.2024.102455</a></li> <li>Hills, Rory A.; Tan, Tiong Kit; et al. (2024) <a href="https://authors.library.caltech.edu/records/dep5e-ak860">Proactive vaccination using multiviral Quartet Nanocages to elicit broad anti-coronavirus responses</a>; Nature Nanotechnology; <a href="https://doi.org/10.1038/s41565-024-01655-9">10.1038/s41565-024-01655-9</a></li> <li>Griffiths, Jessica A.; Yoo, Bryan B.; et al. (2024) <a href="https://authors.library.caltech.edu/records/mbrmj-h6e60">Peripheral neuronal activation shapes the microbiome and alters gut physiology</a>; Cell Reports; Vol. 43; No. 4; 113953; PMCID PMC11132177; <a href="https://doi.org/10.1016/j.celrep.2024.113953">10.1016/j.celrep.2024.113953</a></li> <li>Ding, Xiaozhe; Chen, Xinhong; et al. (2024) <a href="https://authors.library.caltech.edu/records/nyxge-gz849">Fast, accurate ranking of engineered proteins by target-binding propensity using structure modeling</a>; Molecular Therapy; <a href="https://doi.org/10.1016/j.ymthe.2024.04.003">10.1016/j.ymthe.2024.04.003</a></li> <li>Guo, Jimmy K.; Blanco, Mario R.; et al. (2024) <a href="https://authors.library.caltech.edu/records/9bxjt-nqd52">Denaturing purifications demonstrate that PRC2 and other widely reported chromatin proteins do not appear to bind directly to RNA in vivo</a>; Molecular Cell; Vol. 84; No. 7; 1271-1289.e12; PMCID PMC10997485; <a href="https://doi.org/10.1016/j.molcel.2024.01.026">10.1016/j.molcel.2024.01.026</a></li> <li>Chong, Shasha and Yoshida, Shawn (2024) <a href="https://authors.library.caltech.edu/records/3ww8a-hkc68">How transcription factor binding controls transcriptional bursting dynamics: A single-molecule view</a>; Molecular Cell; Vol. 84; No. 6; 997-999; <a href="https://doi.org/10.1016/j.molcel.2024.02.027">10.1016/j.molcel.2024.02.027</a></li> <li>Ling, Bill; Gungoren, Bilge; et al. (2024) <a href="https://authors.library.caltech.edu/records/re205-hd925">Truly Tiny Acoustic Biomolecules for Ultrasound Imaging and Therapy</a>; Advanced Materials; 2307106; <a href="https://doi.org/10.1002/adma.202307106">10.1002/adma.202307106</a></li> <li>Schulte, Samuel J.; Shin, Boyoung; et al. (2024) <a href="https://authors.library.caltech.edu/records/5tqf9-jve59">Multiplex, Quantitative, High-Resolution Imaging of Protein:Protein Complexes via Hybridization Chain Reaction</a>; ACS Chemical Biology; Vol. 19; No. 2; 280-288; PMCID PMC10877569; <a href="https://doi.org/10.1021/acschembio.3c00431">10.1021/acschembio.3c00431</a></li> <li>Schulte, Samuel J.; Fornace, Mark E.; et al. (2024) <a href="https://authors.library.caltech.edu/records/hncah-g5h50">HCR spectral imaging: 10-plex, quantitative, high-resolution RNA and protein imaging in highly autofluorescent samples</a>; Development; Vol. 151; No. 4; dev202307; PMCID PMC10941662; <a href="https://doi.org/10.1242/dev.202307">10.1242/dev.202307</a></li> <li>de Araujo, William Reis; Lukas, Heather; et al. (2024) <a href="https://authors.library.caltech.edu/records/qadzt-fye95">Low-Cost Biosensor Technologies for Rapid Detection of COVID-19 and Future Pandemics</a>; ACS Nano; Vol. 18; No. 3; 1757-1777; <a href="https://doi.org/10.1021/acsnano.3c01629">10.1021/acsnano.3c01629</a></li> <li>Yao, Yuxing and Shapiro, Mikhail G. (2023) <a href="https://authors.library.caltech.edu/records/dbcm4-62w58">Using ultrasound to 3D-print materials</a>; Science; Vol. 382; No. 6675; 1126; <a href="https://doi.org/10.1126/science.adl5887">10.1126/science.adl5887</a></li> <li>Moyers, Belle A.; Partridge, E. Christopher; et al. (2023) <a href="https://authors.library.caltech.edu/records/0bj3x-smq22">Characterization of human transcription factor function and patterns of gene regulation in HepG2 cells</a>; Genome Research; Vol. 33; No. 11; 1879-1892; PMCID PMC10760452; <a href="https://doi.org/10.1101/gr.278205.123">10.1101/gr.278205.123</a></li> <li>Chen, Lizhen; Zhang, Zhao; et al. (2023) <a href="https://authors.library.caltech.edu/records/ev45y-h3764">Hormone-induced enhancer assembly requires an optimal level of hormone receptor multivalent interactions</a>; Molecular Cell; Vol. 83; No. 19; 3438-3456.e12; PMCID PMC10592010; <a href="https://doi.org/10.1016/j.molcel.2023.08.027">10.1016/j.molcel.2023.08.027</a></li> <li>Papini, Santiago; López-Castro, Teresa; et al. (2023) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20230519-1701000.17">Alcohol, cannabis, and nicotine use have distinct associations with COVID-19 pandemic-related experiences: An exploratory Bayesian network analysis across two timepoints</a>; Drug and Alcohol Dependence; Vol. 248; Art. No. 109929; PMCID PMC10186931; <a href="https://doi.org/10.1016/j.drugalcdep.2023.109929">10.1016/j.drugalcdep.2023.109929</a></li> <li>Hoffmann, Magnus A. G.; Yang, Zhi; et al. (2023) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20230519-1669000.14">ESCRT recruitment to SARS-CoV-2 spike induces virus-like particles that improve mRNA vaccines</a>; Cell; Vol. 186; No. 11; 2380-2391; PMCID PMC10121106; <a href="https://doi.org/10.1016/j.cell.2023.04.024">10.1016/j.cell.2023.04.024</a></li> <li>Yoshida, Shawn R.; Maity, Barun K.; et al. (2023) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20230615-129043000.4">Visualizing Protein Localizations in Fixed Cells: Caveats and the Underlying Mechanisms</a>; Journal of Physical Chemistry B; Vol. 127; No. 19; 4165-4173; PMCID PMC10201523; <a href="https://doi.org/10.1021/acs.jpcb.3c01658">10.1021/acs.jpcb.3c01658</a></li> <li>Shen, Cheng; Rawal, Siddarth; et al. (2023) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20230627-116746000.5">Automatic detection of circulating tumor cells and cancer associated fibroblasts using deep learning</a>; Scientific Reports; Vol. 13; 5708; PMCID PMC10082202; <a href="https://doi.org/10.1038/s41598-023-32955-0">10.1038/s41598-023-32955-0</a></li> <li>Rand, Alexander W.; Gonzalez, Kevin J.; et al. (2023) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20230420-956212500.8">Total Synthesis of Strempeliopidine and Non-Natural Stereoisomers through a Convergent Petasis Borono-Mannich Reaction</a>; Journal of the American Chemical Society; Vol. 145; No. 13; 7278-7287; PMCID PMC10281614; <a href="https://doi.org/10.1021/jacs.2c13146">10.1021/jacs.2c13146</a></li> <li>Wise, Toby; Zbozinek, Tomislav D.; et al. (2023) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20220802-839151000">Computationally-defined markers of uncertainty aversion predict emotional responses during a global pandemic</a>; Emotion; Vol. 23; No. 3; 722-736; <a href="https://doi.org/10.1037/emo0001088">10.1037/emo0001088</a></li> <li>Schulte, Samuel J.; Huang, Jining; et al. (2023) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20230227-258668000.1">Hybridization Chain Reaction Lateral Flow Assays for Amplified Instrument-Free At-Home SARS-CoV-2 Testing</a>; ACS Infectious Diseases; Vol. 9; No. 3; 450-458; PMCID PMC9924079; <a href="https://doi.org/10.1021/acsinfecdis.2c00472">10.1021/acsinfecdis.2c00472</a></li> <li>Moestopo, Widianto P.; Shaker, Sammy; et al. (2023) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20230310-60798000.1">Knots are not for naught: Design, properties, and topology of hierarchical intertwined microarchitected materials</a>; Science Advances; Vol. 9; No. 10; eade6725; PMCID PMC9995035; <a href="https://doi.org/10.1126/sciadv.ade6725">10.1126/sciadv.ade6725</a></li> <li>Boeynaems, Steven; Chong, Shasha; et al. (2023) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20230404-290277800.12">Phase Separation in Biology and Disease; Current Perspectives and Open Questions</a>; Journal of Molecular Biology; Vol. 435; No. 5; Art. No. 167971; PMCID PMC9970028; <a href="https://doi.org/10.1016/j.jmb.2023.167971">10.1016/j.jmb.2023.167971</a></li> <li>Wang, Xue Qing David; Fan, Dandan; et al. (2023) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20230322-270078000.2">Mutant NPM1 Hijacks Transcriptional Hubs to Maintain Pathogenic Gene Programs in Acute Myeloid Leukemia</a>; Cancer Discovery; Vol. 13; No. 3; 724-745; PMCID PMC9975662; <a href="https://doi.org/10.1158/2159-8290.cd-22-0424">10.1158/2159-8290.cd-22-0424</a></li> <li>Rusch, Tessa; Han, Yanting; et al. (2023) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20230308-468102500.11">COVID-Dynamic: a large-scale longitudinal study of socioemotional and behavioral change across the pandemic</a>; Scientific Data; Vol. 10; Art. 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(2022) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20230117-369491100.9">Neutralizing monoclonal antibodies elicited by mosaic RBD nanoparticles bind conserved sarbecovirus epitopes</a>; Immunity; Vol. 55; No. 12; 2419-2435.e10; PMCID PMC9606073; <a href="https://doi.org/10.1016/j.immuni.2022.10.019">10.1016/j.immuni.2022.10.019</a></li> <li>Irgen-Gioro, Shawn; Yoshida, Shawn; et al. (2022) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20230125-514169000.3">Fixation can change the appearance of phase separation in living cells</a>; eLife; Vol. 11; Art. No. e79903; PMCID PMC9817179; <a href="https://doi.org/10.7554/elife.79903">10.7554/elife.79903</a></li> <li>Cohen, Alexander A.; van Doremalen, Neeltje; et al. (2022) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20220705-214139631">Mosaic RBD nanoparticles protect against challenge by diverse sarbecoviruses in animal models</a>; Science; Vol. 377; No. 6606; Art. No. eabq0839; PMCID PMC9273039; <a href="https://doi.org/10.1126/science.abq0839">10.1126/science.abq0839</a></li> <li>Liang, Mingshu and Yang, Changhuei (2022) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20220722-768660000">Implementation of free-space Fourier Ptychography with near maximum system numerical aperture</a>; Optics Express; Vol. 30; No. 12; 20321-20332; PMCID PMC9363023; <a href="https://doi.org/10.1364/oe.459833">10.1364/oe.459833</a></li> <li>Li, Shan; Wang, Feng; et al. (2022) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20220429-183149900">NMS-873 Leads to Dysfunctional Glycometabolism in A p97-Independent Manner in HCT116 Colon Cancer Cells</a>; Pharmaceutics; Vol. 14; No. 4; 764; PMCID PMC9024726; <a href="https://doi.org/10.3390/pharmaceutics14040764">10.3390/pharmaceutics14040764</a></li> <li>Tanaka, Shiho; Olson, C. Anders; et al. (2022) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20210915-214123136">Rapid identification of neutralizing antibodies against SARS-CoV-2 variants by mRNA display</a>; Cell Reports; Vol. 38; No. 6; Art. No. 110348; PMCID PMC8769934; <a href="https://doi.org/10.1016/j.celrep.2022.110348">10.1016/j.celrep.2022.110348</a></li> <li>Wang, Feng; Li, Shan; et al. (2022) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20220208-948531000">The p97 Inhibitor UPCDC-30245 Blocks Endo-Lysosomal Degradation</a>; Pharmaceuticals; Vol. 15; No. 2; Art. No. 204; PMCID PMC8880557; <a href="https://doi.org/10.3390/ph15020204">10.3390/ph15020204</a></li> <li>Brune, Karl D.; Liekniņa, Ilva; et al. (2021) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20211008-224615060">N-Terminal Modification of Gly-His-Tagged Proteins with Azidogluconolactone</a>; ChemBioChem; Vol. 22; No. 22; 3199-3207; <a href="https://doi.org/10.1002/cbic.202100381">10.1002/cbic.202100381</a></li> <li>Cheng, Kai-Wen; Li, Shan; et al. (2021) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20211117-180505059">Impacts of p97 on Proteome Changes in Human Cells during Coronaviral Replication</a>; Cells; Vol. 10; No. 11; Art. No. 2953; PMCID PMC8616207; <a href="https://doi.org/10.3390/cells10112953">10.3390/cells10112953</a></li> <li>Abernathy, Morgan E.; Dam, Kim-Marie A.; et al. (2021) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20211021-175154754">How Antibodies Recognize Pathogenic Viruses: Structural Correlates of Antibody Neutralization of HIV-1, SARS-CoV-2, and Zika</a>; Viruses; Vol. 13; No. 10; Art. 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(2021) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20210216-123229308">Detection and characterization of the SARS-CoV-2 lineage B.1.526 in New York</a>; Nature Communications; Vol. 12; Art. No. 4886; PMCID PMC8352861; <a href="https://doi.org/10.1038/s41467-021-25168-4">10.1038/s41467-021-25168-4</a></li> <li>Greaney, Allison J.; Starr, Tyler N.; et al. (2021) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20210322-133440105">Mapping mutations to the SARS-CoV-2 RBD that escape binding by different classes of antibodies</a>; Nature Communications; Vol. 12; Art. No. 4196; PMCID PMC8263750; <a href="https://doi.org/10.1038/s41467-021-24435-8">10.1038/s41467-021-24435-8</a></li> <li>Scheid, Johannes F.; Barnes, Christopher O.; et al. 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