<h1 id="division-of-biology-and-biological-engineering"><a
href="./">Division of Biology and Biological Engineering</a></h1>
<h2 id="section">(““)</h2>
<h3 id="book">Book</h3>
<p>Sections from <a
href="https://authors.library.caltech.edu">CaltechAUTHORS</a></p>
<ul>
<li>Morais, Livia H.; de Castro Fonseca, Matheus; et al. (2025) <a
href="https://authors.library.caltech.edu/records/b8ggc-xy695">The gut
microbiome in animal models of Parkinson’s disease</a>; ISBN
9780443135507; Integrative Omics in Parkinson’s Disease; Academic Press:
Amsterdam; 153-169; <a
href="https://doi.org/10.1016/b978-0-443-13550-7.00010-0">10.1016/b978-0-443-13550-7.00010-0</a></li>
<li>Schweikert, Christina; Shimojo, Shinsuke; et al. (2022) <a
href="https://resolver.caltech.edu/CaltechAUTHORS:20230526-661743000.1">Modeling
Prototypical Preference Behavior and Diversity using Rank Score
Characteristic Functions</a>; ISBN 978-1-6654-9084-9; 2022 IEEE 21st
International Conference on Cognitive Informatics &amp; Cognitive
Computing (ICCI*CC); IEEE: Piscataway, NJ; 203-207; <a
href="https://doi.org/10.1109/iccicc57084.2022.10101519">10.1109/iccicc57084.2022.10101519</a></li>
<li>Graebener, Josefine B.; Badithela, Apurva; et al. (2022) <a
href="https://resolver.caltech.edu/CaltechAUTHORS:20220715-744315000">Towards
Better Test Coverage: Merging Unit Tests for Autonomous Systems</a>;
ISBN 9783031067723; NASA Formal Methods: 14th International Symposium,
NFM 2022, Pasadena, CA, USA, May 24–27, 2022, Proceedings; Springer:
Cham; 133-155; <a
href="https://doi.org/10.1007/978-3-031-06773-0_7">10.1007/978-3-031-06773-0_7</a></li>
<li>Endo, Yoshitaka; Shimojo, Shinsuke; et al. (2022) <a
href="https://resolver.caltech.edu/CaltechAUTHORS:20220624-677864000">Investigation
of influence of loss function weights of cycle-consistent adversarial
networks on generation of pareidolia stimuli</a>; ISBN 9781510653313;
International Workshop on Advanced Imaging Technology (IWAIT) 2022;
Society of Photo-Optical Instrumentation Engineers: Bellingham, WA; Art.
No. 121773I; <a
href="https://doi.org/10.1117/12.2625964">10.1117/12.2625964</a></li>
<li>Athavale, Soumitra V.; Chen, Kai; et al. (2021) <a
href="https://resolver.caltech.edu/CaltechAUTHORS:20220126-25738800">Engineering
Enzymes for New‐to‐Nature Carbene Chemistry</a>; ISBN 9783527347995;
Transition Metal-Catalyzed Carbene Transformations; Wiley: Weinheim;
95-138; <a
href="https://doi.org/10.1002/9783527829170.ch4">10.1002/9783527829170.ch4</a></li>
<li>Pandey, Ayush and Murray, Richard M. (2021) <a
href="https://resolver.caltech.edu/CaltechAUTHORS:20220210-721878000">Robustness
Guarantees for Structured Model Reduction of Dynamical Systems</a>; ISBN
978-1-6654-3659-5; 2021 60th IEEE Conference on Decision and Control
(CDC); IEEE: Piscataway, NJ; 6920-6927; <a
href="https://doi.org/10.1109/cdc45484.2021.9683298">10.1109/cdc45484.2021.9683298</a></li>
<li>Badithela, Apurva; Wongpiromsarn, Tichakorn; et al. (2021) <a
href="https://resolver.caltech.edu/CaltechAUTHORS:20220210-721863000">Leveraging
Classification Metrics for Quantitative System-Level Analysis with
Temporal Logic Specifications</a>; ISBN 978-1-6654-3659-5; 2021 60th
IEEE Conference on Decision and Control (CDC); IEEE: Piscataway, NJ;
564-571; <a
href="https://doi.org/10.1109/cdc45484.2021.9683611">10.1109/cdc45484.2021.9683611</a></li>
<li>Rosolia, Ugo; Ahmadi, Mohamadreza; et al. (2021) <a
href="https://resolver.caltech.edu/CaltechAUTHORS:20210511-085123358">Time-Optimal
Navigation in Uncertain Environments with High-Level Specifications</a>;
ISBN 978-1-6654-3659-5; 2021 60th IEEE Conference on Decision and
Control (CDC); IEEE: Piscataway, NJ; 4287-4294; <a
href="https://doi.org/10.1109/CDC45484.2021.9683486">10.1109/CDC45484.2021.9683486</a></li>
<li>Schweikert, Christina; Shimojo, Shinsuke; et al. (2021) <a
href="https://resolver.caltech.edu/CaltechAUTHORS:20220707-315700000">Improving
Preference Detection with Eye Movement Gaze and Cognitive Diversity</a>;
ISBN 978-1-6654-2119-5; 2021 IEEE 20th International Conference on
Cognitive Informatics &amp; Cognitive Computing (ICCI*CC); IEEE:
Piscataway, NJ; 98-102; <a
href="https://doi.org/10.1109/iccicc53683.2021.9811298">10.1109/iccicc53683.2021.9811298</a></li>
<li>Hsu, D. Frank; Shehata, Mohammad; et al. (2021) <a
href="https://resolver.caltech.edu/CaltechAUTHORS:20220317-376224000">Human
Cognition and Hyper Intelligence</a>; ISBN 978-1-6654-2174-4; 2021 IEEE
Intl Conf on Dependable, Autonomic and Secure Computing, Intl Conf on
Pervasive Intelligence and Computing, Intl Conf on Cloud and Big Data
Computing, Intl Conf on Cyber Science and Technology Congress
(DASC/PiCom/CBDCom/CyberSciTech); IEEE: Piscataway, NJ; 775-781; <a
href="https://doi.org/10.1109/dasc-picom-cbdcom-cyberscitech52372.2021.00127">10.1109/dasc-picom-cbdcom-cyberscitech52372.2021.00127</a></li>
<li>Bagherian, Dawna; Gornet, James; et al. (2021) <a
href="https://resolver.caltech.edu/CaltechAUTHORS:20210920-171551019">Fine-Grained
System Identification of Nonlinear Neural Circuits</a>; ISBN
978-1-4503-8332-5; Proceedings of the 27th ACM SIGKDD Conference on
Knowledge Discovery &amp; Data Mining; Association for Computing
Machinery: New York, NY; 14-24; <a
href="https://doi.org/10.1145/3447548.3467402">10.1145/3447548.3467402</a></li>
<li>Mayalu, Michaëlle N.; Sarma, Anish; et al. (2021) <a
href="https://resolver.caltech.edu/CaltechAUTHORS:20220503-50866100">Systems
Level Model of Dietary Effects on Cognition via the Microbiome-Gut-Brain
Axis</a>; ISBN 978-9-4638-4236-5; 2021 European Control Conference
(ECC); IEEE: Piscataway, NJ; 312-318; <a
href="https://doi.org/10.23919/ecc54610.2021.9655216">10.23919/ecc54610.2021.9655216</a></li>
<li>Phan-Minh, Tung and Murray, Richard M. (2021) <a
href="https://resolver.caltech.edu/CaltechAUTHORS:20191029-132616005">Contracts
of Reactivity</a>; ISBN 978-9-4638-4236-5; 2021 European Control
Conference (ECC); IEEE: Piscataway, NJ; 2611-2618; <a
href="https://doi.org/10.23919/ECC54610.2021.9654932">10.23919/ECC54610.2021.9654932</a></li>
<li>Cheng, Richard; Murray, Richard M.; et al. (2021) <a
href="https://resolver.caltech.edu/CaltechAUTHORS:20210511-085543440">Limits
of Probabilistic Safety Guarantees when Considering Human
Uncertainty</a>; ISBN 978-1-7281-9077-8; 2021 IEEE International
Conference on Robotics and Automation (ICRA); IEEE: Piscataway, NJ;
3182-3189; <a
href="https://doi.org/10.1109/ICRA48506.2021.9561843">10.1109/ICRA48506.2021.9561843</a></li>
<li>Sun, Jennifer J.; Kennedy, Ann; et al. (2021) <a
href="https://resolver.caltech.edu/CaltechAUTHORS:20210119-161625521">Task
Programming: Learning Data Efficient Behavior Representations</a>; ISBN
978-1-6654-4509-2; 2021 IEEE/CVF Conference on Computer Vision and
Pattern Recognition (CVPR); IEEE: Piscataway, NJ; 2875-2884; <a
href="https://doi.org/10.1109/CVPR46437.2021.00290">10.1109/CVPR46437.2021.00290</a></li>
<li>Ahmadi, Mohamadreza; Rosolia, Ugo; et al. (2021) <a
href="https://resolver.caltech.edu/CaltechAUTHORS:20210120-165231602">Constrained
Risk-Averse Markov Decision Processes</a>; <a
href="https://doi.org/10.48550/arXiv.2012.02423">10.48550/arXiv.2012.02423</a></li>
<li>Kasahara, Shunichi; Takada, Kazuma; et al. (2021) <a
href="https://resolver.caltech.edu/CaltechAUTHORS:20220422-747871100">Preserving
Agency During Electrical Muscle Stimulation Training Speeds up Reaction
Time Directly After Removing EMS</a>; ISBN 978-1-4503-8096-6;
Proceedings of the 2021 CHI Conference on Human Factors in Computing
Systems; Association for Computing Machinery: New York, NY; Art.
No. 194; <a
href="https://doi.org/10.1145/3411764.3445147">10.1145/3411764.3445147</a></li>
<li>Chen, Fu-Der; Jung, Youngho; et al. (2021) <a
href="https://resolver.caltech.edu/CaltechAUTHORS:20220105-910820600">Sidelobe-Free
Beam-Steering using Optical Phased Arrays for Neural Probes</a>; ISBN
978-1-943580-91-0; 2021 Conference on Lasers and Electro-Optics (CLEO);
Optical Society of America: Washington, DC; Art. No. SW3B.2; <a
href="https://doi.org/10.1364/cleo_si.2021.sw3b.2">10.1364/cleo_si.2021.sw3b.2</a></li>
<li>Ren, Xinying; Cuba Samaniego, Christian; et al. (2021) <a
href="https://resolver.caltech.edu/CaltechAUTHORS:20201111-093413972">Bistable
State Switch Enables Ultrasensitive Feedback Control in Heterogeneous
Microbial Populations</a>; ISBN 978-1-6654-4197-1; 2021 American Control
Conference (ACC); IEEE: Piscataway, NJ; 652-659; <a
href="https://doi.org/10.23919/ACC50511.2021.9482836">10.23919/ACC50511.2021.9482836</a></li>
<li>Stundl, Jan; Bertucci, Paola Y.; et al. (2021) <a
href="https://resolver.caltech.edu/CaltechAUTHORS:20210223-141057698">Evolution
of new cell types at the lateral neural border</a>; ISBN 9780128149683;
Evolutionary Developmental Biology; Elsevier: Cambridge, MA; 173-205; <a
href="https://doi.org/10.1016/bs.ctdb.2020.11.005">10.1016/bs.ctdb.2020.11.005</a></li>
<li>Kaplan, Mohammed; Nicolas, William J.; et al. (2020) <a
href="https://resolver.caltech.edu/CaltechAUTHORS:20210111-153220027">In
Situ Imaging and Structure Determination of Biomolecular Complexes Using
Electron Cryo-Tomography</a>; ISBN 978-1-0716-0965-1; cryoEM: Methods
and Protocols; Humana Press: New York, NY; 83-111; <a
href="https://doi.org/10.1007/978-1-0716-0966-8_4">10.1007/978-1-0716-0966-8_4</a></li>
<li>Akella, Prithvi; Ahmadi, Mohamadreza; et al. (2020) <a
href="https://resolver.caltech.edu/CaltechAUTHORS:20200527-124225030">Formal
Test Synthesis for Safety-Critical Autonomous Systems based on Control
Barrier Functions</a>; ISBN 9781728174471; 2020 59th IEEE Conference on
Decision and Control (CDC); IEEE: Piscataway, NJ; 790-795; <a
href="https://doi.org/10.1109/CDC42340.2020.9303776">10.1109/CDC42340.2020.9303776</a></li>
<li>Bernstein, Jeremy; Zhao, Jiawei; et al. (2020) <a
href="https://resolver.caltech.edu/CaltechAUTHORS:20201106-120208748">Learning
compositional functions via multiplicative weight updates</a>; <a
href="https://doi.org/10.48550/arXiv.2006.14560">10.48550/arXiv.2006.14560</a></li>
<li>Huang, Yujia; Gornet, James; et al. (2020) <a
href="https://resolver.caltech.edu/CaltechAUTHORS:20201106-120201944">Neural
Networks with Recurrent Generative Feedback</a>; <a
href="https://doi.org/10.48550/arXiv.2007.09200">10.48550/arXiv.2007.09200</a></li>
<li>Hutchins, Erica J. and Bronner, Marianne E. (2020) <a
href="https://resolver.caltech.edu/CaltechAUTHORS:20200923-121742113">A
Spectrum of Cell States During the Epithelial-to-Mesenchymal
Transition</a>; ISBN 978-1-0716-0778-7; The Epithelial-to Mesenchymal
Transition: Methods and Protocols; Humana Press: New York, NY; 3-6; <a
href="https://doi.org/10.1007/978-1-0716-0779-4_1">10.1007/978-1-0716-0779-4_1</a></li>
<li>Sohn, Won J.; Wang, Po T.; et al. (2020) <a
href="https://resolver.caltech.edu/CaltechAUTHORS:20200914-141012984">A
Prototype of a Fully-Implantable Charge-Balanced Artificial Sensory
Stimulator for Bi-directional Brain-Computer-Interface (BD-BCI)</a>;
ISBN 9781728119908; 2020 42nd Annual International Conference of the
IEEE Engineering in Medicine &amp; Biology Society (EMBC); IEEE:
Piscataway, NJ; 3082-3085; <a
href="https://doi.org/10.1109/embc44109.2020.9176718">10.1109/embc44109.2020.9176718</a></li>
<li>Serrano-Amenos, Claudia; Hu, Frank; et al. (2020) <a
href="https://resolver.caltech.edu/CaltechAUTHORS:20200914-142034847">Thermal
Analysis of a Skull Implant in Brain-Computer Interfaces</a>; ISBN
9781728119908; 2020 42nd Annual International Conference of the IEEE
Engineering in Medicine &amp; Biology Society (EMBC); IEEE: Piscataway,
NJ; 3066-3069; <a
href="https://doi.org/10.1109/embc44109.2020.9175483">10.1109/embc44109.2020.9175483</a></li>
<li>Baldini, Francesca; Anandkumar, Animashree; et al. (2020) <a
href="https://resolver.caltech.edu/CaltechAUTHORS:20200108-154918519">Learning
Pose Estimation for UAV Autonomous Navigation and Landing Using
Visual-Inertial Sensor Data</a>; ISBN 9781538682661; 2020 American
Control Conference (ACC); IEEE: Piscataway, NJ; 2961-2966; <a
href="https://doi.org/10.23919/ACC45564.2020.9147400">10.23919/ACC45564.2020.9147400</a></li>
<li>Ahmadi, Mohamadreza; Ono, Masahiro; et al. (2020) <a
href="https://resolver.caltech.edu/CaltechAUTHORS:20200109-092433424">Risk-Averse
Planning Under Uncertainty</a>; ISBN 9781538682661; 2020 American
Control Conference (ACC); IEEE: Piscataway, NJ; 3305-3312; <a
href="https://doi.org/10.23919/ACC45564.2020.9147792">10.23919/ACC45564.2020.9147792</a></li>
<li>Doeser, Ludvig; Nilsson, Petter; et al. (2020) <a
href="https://resolver.caltech.edu/CaltechAUTHORS:20200730-143943975">Invariant
Sets for Integrators and Quadrotor Obstacle Avoidance</a>; ISBN
9781538682661; 2020 American Control Conference (ACC); IEEE: Piscataway,
NJ; 3814-3821; <a
href="https://doi.org/10.23919/acc45564.2020.9147872">10.23919/acc45564.2020.9147872</a></li>
<li>Schwarzkopf, Maayan; Choi, Harry M. T.; et al. (2020) <a
href="https://resolver.caltech.edu/CaltechAUTHORS:20200518-144322691">Multiplexed
Quantitative In Situ Hybridization for Mammalian or Bacterial Cells in
Suspension: qHCR Flow Cytometry (v3.0)</a>; ISBN 978-1-0716-0622-3; In
Situ Hybridization Protocols; Humana Press: New York, NY; 127-141; <a
href="https://doi.org/10.1007/978-1-0716-0623-0_8">10.1007/978-1-0716-0623-0_8</a></li>
<li>Choi, Harry M. T.; Schwarzkopf, Maayan; et al. (2020) <a
href="https://resolver.caltech.edu/CaltechAUTHORS:20200518-142723478">Multiplexed
Quantitative In Situ Hybridization with Subcellular or Single-Molecule
Resolution Within Whole-Mount Vertebrate Embryos: qHCR and dHCR Imaging
(v3.0)</a>; ISBN 978-1-0716-0622-3; In Situ Hybridization Protocols;
Humana Press: New York, NY; 159-178; <a
href="https://doi.org/10.1007/978-1-0716-0623-0_10">10.1007/978-1-0716-0623-0_10</a></li>
<li>Schwarzkopf, Maayan; Choi, Harry M. T.; et al. (2020) <a
href="https://resolver.caltech.edu/CaltechAUTHORS:20200518-143331174">Multiplexed
Quantitative In Situ Hybridization for Mammalian Cells on a Slide: qHCR
and dHCR Imaging (v3.0)</a>; ISBN 978-1-0716-0622-3; In Situ
Hybridization Protocols; Humana Press: New York, NY; 143-156; <a
href="https://doi.org/10.1007/978-1-0716-0623-0_9">10.1007/978-1-0716-0623-0_9</a></li>
<li>Klaesson, Filip; Nilsson, Petter; et al. (2020) <a
href="https://resolver.caltech.edu/CaltechAUTHORS:20200109-092058249">Intermittent
Connectivity for Exploration in Communication-Constrained Multi-Agent
Systems</a>; <a
href="https://doi.org/10.1109/ICCPS48487.2020.00031">10.1109/ICCPS48487.2020.00031</a></li>
<li>Guerrero Peña, Fidel A.; Marrero Fernandez, Pedro D.; et al. (2020)
<a
href="https://resolver.caltech.edu/CaltechAUTHORS:20200528-143929426">J
Regularization Improves Imbalanced Multiclass Segmentation</a>; ISBN
9781538693308; 2020 IEEE 17th International Symposium on Biomedical
Imaging (ISBI); IEEE: Piscataway, NJ; 948-952; <a
href="https://doi.org/10.1109/isbi45749.2020.9098550">10.1109/isbi45749.2020.9098550</a></li>
<li>Beery, Sara; Liu, Yang; et al. (2020) <a
href="https://resolver.caltech.edu/CaltechAUTHORS:20200526-140034764">Synthetic
Examples Improve Generalization for Rare Classes</a>; ISBN
978-1-7281-6553-0; 2020 IEEE Winter Conference on Applications of
Computer Vision (WACV); IEEE: Piscataway, NJ; 852-862; <a
href="https://doi.org/10.1109/WACV45572.2020.9093570">10.1109/WACV45572.2020.9093570</a></li>
<li>Ma, Guangxu; Wang, Tao; et al. (2020) <a
href="https://resolver.caltech.edu/CaltechAUTHORS:20200131-155314220">Elucidating
the molecular and developmental biology of parasitic nematodes: Moving
to a multiomics paradigm</a>; ISBN 978-0-12-820750-5; Giardia and
Giardiasis, Part A; Academic Press: London; 175-229; <a
href="https://doi.org/10.1016/bs.apar.2019.12.005">10.1016/bs.apar.2019.12.005</a></li>
<li>Moore, Andrew; Allman, John; et al. (1991) <a
href="https://resolver.caltech.edu/CaltechAUTHORS:20160119-151416374">A
VLSI Neural Network for Color Constancy</a>; ISBN 1-55860-184-8;
Advances in Neural Information Processing Systems 3; Morgan Kaufmann:
San Mateo, CA; 370-376</li>
</ul>