Division of Biology and Biological Engineering

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Articles from CaltechAUTHORS

• Edens, Brittany M.; Lin, Jason; et al. (2025) Ancient emergence of neuronal heterogeneity in the enteric nervous system of jawless vertebrates; Developmental Biology; Vol. 520; 117-124; 10.1016/j.ydbio.2024.12.020
• Uslan, Travis; Quan, Baiyi; et al. (2025) In-Depth Comparison of Reagent-Based Digestion Methods and Two Commercially Available Kits for Bottom-Up Proteomics; ACS Omega; 10.1021/acsomega.4c11585
• Wang, Zitong Jerry; Farooq, Abdullah S.; et al. (2025) Identifying perturbations that boost T-cell infiltration into tumours via counterfactual learning of their spatial proteomic profiles; Nature Biomedical Engineering; 10.1038/s41551-025-01357-0
• Readhead, Carol; Mahler, Simon; et al. (2025) Automated non-invasive laser speckle imaging of the chick heart rate and extraembryonic blood vessels and their response to nifedipine and amlodipine drugs; Developmental Biology; Vol. 519; 46-54; 10.1016/j.ydbio.2024.12.005
• Askary, Amjad; Chen, Wei; et al. (2025) The lives of cells, recorded; Nature Reviews Genetics; Vol. 26; 203–222; 10.1038/s41576-024-00788-w
• Swartwood, Brea (2025) Stability analysis of traveling wave fronts in a model for tumor growth; Nonlinear Analysis: Real World Applications; Vol. 81; 104176; 10.1016/j.nonrwa.2024.104176
• Urzúa Lehuedé, Tomás; Berdion Gabarain, Victoria; et al. (2025) Two antagonistic gene regulatory networks drive Arabidopsis root hair growth at low temperature linked to a low‐nutrient environment; New Phytologist; 10.1111/nph.20406
• Yang, Xi; Yan, An; et al. (2025) Single cell derived multicellular meristem: insights into male-to-hermaphrodite conversion and de novo meristem formation in ceratopteris; Development; 10.1242/dev.204411
• Kuintzle, Rachael; Santat, Leah A; et al. (2025) Diversity in Notch ligand-receptor signaling interactions; eLife; Vol. 12; 10.7554/elife.91422
• Lin, Chujun; Keles, Umit; et al. (2025) How trait impressions of faces shape subsequent mental state inferences; Nature Human Behaviour; Vol. 9; 208–226; 10.1038/s41562-024-02059-4
• Merk, Liana N.; Shur, Andrey S.; et al. (2024) Diagnostic and Therapeutic Microbial Circuit with Application to Intestinal Inflammation; ACS Synthetic Biology; Vol. 13; No. 12; 3885–3896; 10.1021/acssynbio.3c00668
• Sánchez-Guardado, Luis; Razavi, Peyman Callejas; et al. (2024) Projection neurons are necessary for the maintenance of the mouse olfactory circuit; eLife; Vol. 13; 10.7554/elife.90296
• Sakai, Alexandra; Singh, Gagandeep; et al. (2024) Inhibition of SARS-CoV-2 growth in the lungs of mice by a peptide-conjugated morpholino oligomer targeting viral RNA; Moleclar Therapy - Nucleic Acids; Vol. 35; No. 4; 102331; 10.1016/j.omtn.2024.102331
• Haghi, Benyamin; Aflalo, Tyson; et al. (2024) Enhanced control of a brain–computer interface by tetraplegic participants via neural-network-mediated feature extraction; Nature Biomedical Engineering; 10.1038/s41551-024-01297-1
• Cao, Runnan; Dubois, Julien; et al. (2024) Domain-specific representation of social inference by neurons in the human amygdala and hippocampus; Science Advances; Vol. 10; No. 49; 10.1126/sciadv.ado6166
• DeLaitsch, Andrew T.; Keeffe, Jennifer R.; et al. (2024) Neutralizing antibodies elicited in macaques recognize V3 residues on altered conformations of HIV-1 Env trimer; npj Vaccines; Vol. 9; No. 1; 240; 10.1038/s41541-024-01038-0
• Felce, Catherine; Gorin, Gennady; et al. (2024) Biophysical model for joint analysis of chromatin and RNA sequencing data; Physical Review E; Vol. 110; No. 6; 064405; 10.1103/physreve.110.064405
• Nayak, Rohit; Duan, Mengtong; et al. (2024) Harmonic imaging for nonlinear detection of acoustic biomolecules; APL Bioengineering; Vol. 8; No. 4; 046110; 10.1063/5.0214306
• Castillo-Ramírez, Luis A.; Herget, Ulrich; et al. (2024) Early-life challenge enhances cortisol regulation in zebrafish larvae; Biology Open; Vol. 13; No. 12; 10.1242/bio.061684
• Jing, Zeyu and Meister, Markus (2024) A Fast Algorithm for All-Pairs-Shortest-Paths Suitable for Neural Networks; Neural Computation; Vol. 36; No. 12; 2710-2733; 10.1162/neco_a_01716
• Squyres, Georgia R and Newman, Dianne (2024) Biofilms as more than the sum of their parts: lessons from developmental biology; Current Opinion in Microbiology; Vol. 82; 102537; 10.1016/j.mib.2024.102537
• Srivastava, Aruesha; Nair, Aryana; et al. (2024) Structures of Trichomonas vaginalis macrophage migratory inhibitory factor; Acta Crystallographica. Section F; Vol. 80; No. 12; 341-347; 10.1107/s2053230x24011105
• Watanabe, Kiichi; Chiu, Hui; et al. (2024) Whole-brain in situ mapping of neuronal activation in Drosophila during social behaviors and optogenetic stimulation; eLife; Vol. 12; 10.7554/elife.92380
• Ciemniecki, John A.; Ho, Chia-Lun; et al. (2024) Mechanistic study of a low-power bacterial maintenance state using high-throughput electrochemistry; Cell; Vol. 187; No. 24; 6882-6895.e8; 10.1016/j.cell.2024.09.042
• Wang, Tongtong; Teng, Bochuan; et al. (2024) Organ-specific sympathetic innervation defines visceral functions; Nature; 10.1038/s41586-024-08269-0
• Jaeger, Eliza C.B.; Vijatovic, David; et al. (2024) Adeno-associated viral tools to trace neural development and connectivity across amphibians; Developmental Cell; 10.1016/j.devcel.2024.10.025
• Perez, Andrew A.; Goronzy, Isabel N.; et al. (2024) ChIP-DIP maps binding of hundreds of proteins to DNA simultaneously and identifies diverse gene regulatory elements; Nature Genetics; Vol. 56; 2827–2841; 10.1038/s41588-024-02000-5
• Feng, Shu; Xie, Na; et al. (2024) Cryptic phosphoribosylase activity of NAMPT restricts the virion incorporation of viral proteins; Nature Metabolism; Vol. 6; 2300–2318; 10.1038/s42255-024-01162-0
• Amit, Ido; Ardlie, Kristin; et al. (2024) The commitment of the human cell atlas to humanity; Nature Communications; Vol. 15; No. 1; 10019; 10.1038/s41467-024-54306-x
• Kapasiawala, Manisha and Murray, Richard M. (2024) Metabolic Perturbations to an Escherichia coli-based Cell-Free System Reveal a Trade-off between Transcription and Translation; ACS Synthetic Biology; Vol. 13; No. 12; 3976–3990; 10.1021/acssynbio.4c00361
• Kirby, Emily; Bernier, Alexander; et al. (2024) Data sharing ethics toolkit: The Human Cell Atlas; Nature Communications; Vol. 15; No. 1; 9901; 10.1038/s41467-024-54300-3
• Ladinsky, Mark S.; Zhu, Li; et al. (2024) Electron tomography visualization of HIV-1 virions trapped by fusion inhibitors to host cells in infected tissues; Journal of Virology; Vol. 98; No. 11; e01432-24; PMCID PMC11575291; 10.1128/jvi.01432-24
• Santorelli, Marco; Bhamidipati, Pranav S.; et al. (2024) Control of spatio-temporal patterning via cell growth in a multicellular synthetic gene circuit; Nature Communications; Vol. 15; 9867; 10.1038/s41467-024-53078-8
• Zhao, Bingqian; He, Xiaolong; et al. (2024) Multi-touch microcapsules/silicone-polyacrylate hybrid hydrogels with precise self-healing ability and their self-powered sensing applications in emergency rescue; Chemical Engineering Journal; Vol. 500; 157149; 10.1016/j.cej.2024.157149
• Horak, Richard D.; Ciemniecki, John A.; et al. (2024) Bioenergetic suppression by redox-active metabolites promotes antibiotic tolerance in Pseudomonas aeruginosa; Proceedings of the National Academy of Sciences; Vol. 121; No. 46; e2406555121; 10.1073/pnas.2406555121
• Tamborini, Alessio and Gharib, Morteza (Mory) (2024) Listening to heart sounds through the pressure waveform; Scientific Reports; Vol. 14; No. 1; 26824; 10.1038/s41598-024-78554-5
• Sun, Jiaqiu Vince; Jing, Zeyu; et al. (2024) Perceptual tri-stability, measured and fitted as emergent from a model for bistable alternations; Hearing Research; Vol. 453; 109123; 10.1016/j.heares.2024.109123
• Sader, John E.; Gomez, Alfredo; et al. (2024) Data-driven fingerprint nanoelectromechanical mass spectrometry; Nature Communications; Vol. 15; No. 1; 8800; 10.1038/s41467-024-51733-8
• Hadas, Ron; Rubinstein, Hernan; et al. (2024) Temporal BMP4 effects on mouse embryonic and extraembryonic development; Nature; Vol. 634; 652–661; 10.1038/s41586-024-07937-5
• Shin, Boyoung; Chang, Samantha J.; et al. (2024) Transcriptional network dynamics in early T cell development; Journal of Experimental Medicine; Vol. 221; No. 10; e20230893; 10.1084/jem.20230893
• Zhang, Mark G.; Seyedolmohadesin, Maedeh; et al. (2024) Sensory integration of food and population density during the diapause exit decision involves insulin-like signaling in Caenorhabditis elegans; Proceedings of the National Academy of Sciences; Vol. 121; No. 40; e2405391121; 10.1073/pnas.2405391121
• Lu, Chenyue; Pankaj, Amaya; et al. (2024) HCC spatial transcriptomic profiling reveals significant and potentially targetable cancer-endothelial interactions; Hepatology Communications; Vol. 8; No. 10; e0533; 10.1097/hc9.0000000000000533
• Huang, Buwei; Abedi, Mohamad; et al. (2024) Designed endocytosis-inducing proteins degrade targets and amplify signals; Nature; No. 8031; 10.1038/s41586-024-07948-2
• Varshavsky, Alexander (2024) N-degron pathways; Proceedings of the National Academy of Sciences; Vol. 121; No. 39; e2408697121; 10.1073/pnas.2408697121
• Agrawal, Parul; Knudsen, Maria L.; et al. (2024) Short CDRL1 in intermediate VRC01-like mAbs is not sufficient to overcome key glycan barriers on HIV-1 Env; Journal of Virology; 10.1128/jvi.00744-24
• Coppinger, Macey; Liu, Yang; et al. (2024) Transient infection of Euprymna scolopes with an engineered D-alanine auxotroph of Vibrio fischeri; Applied and Environmental Microbiology; e01298-24; 10.1128/aem.01298-24
• Polonsky, Michal; Gerhardt, Louisa M. S.; et al. (2024) Spatial transcriptomics defines injury specific microenvironments and cellular interactions in kidney regeneration and disease; Nature Communications; Vol. 15; No. 1; 7010; PMCID PMC11377535; 10.1038/s41467-024-51186-z
• Iton, Zachery W. B.; Irving-Singh, Zion; et al. (2024) Modular MPS₃-Based Frameworks for Superionic Conduction of Monovalent and Multivalent Ions; Journal of the American Chemical Society; Vol. 146; No. 35; 24398–24414; 10.1021/jacs.4c06263
• Flamholz, Avi I.; Goldford, Joshua E.; et al. (2024) Annotation-free prediction of microbial dioxygen utilization; mSystems; e00763-24; 10.1128/msystems.00763-24
• Bugacov, Helena; Der, Balint; et al. (2024) Dose-dependent responses to canonical Wnt transcriptional complexes in the regulation of mammalian nephron progenitors; Development; Vol. 151; No. 18; dev202279; 10.1242/dev.202279
• Der, Balint; Bugacov, Helena; et al. (2024) Cadherin Adhesion Complexes Direct Cell Aggregation in the Epithelial Transition of Wnt-Induced Nephron Progenitor Cells; Development; Vol. 151; No. 18; dev202303; 10.1242/dev.202303
• Niu, Xubo; Melendez, Delmy L.; et al. (2024) A conserved transcription factor regulatory program promotes tendon fate; Developmental Cell; Vol. 59; 1-18; 10.1016/j.devcel.2024.08.006
• Zhang, Oumeng; Alcalde, Reinaldo E.; et al. (2024) Investigating 3D microbial community dynamics of the rhizosphere using quantitative phase and fluorescence microscopy; Proceedings of the National Academy of Sciences; Vol. 121; No. 33; e2403122121; 10.1073/pnas.2403122121
• Kim, Sunghyun; Koppitch, Kari; et al. (2024) Comparative single-cell analyses identify shared and divergent features of human and mouse kidney development; Developmental Cell; 10.1016/j.devcel.2024.07.013
• Dong, Zhenyu; Mahler, Simon; et al. (2024) Non-invasive laser speckle contrast imaging (LSCI) of extra-embryonic blood vessels in intact avian eggs at early developmental stages; Biomedical Optics Express; Vol. 15; No. 8; 4605-4624; 10.1364/boe.530366
• Garibyan, Mher; Hoffman, Tyler; et al. (2024) Engineering programmable material-to-cell pathways via synthetic notch receptors to spatially control differentiation in multicellular constructs; Nature Communications; Vol. 15; 5891; PMCID PMC11246427; 10.1038/s41467-024-50126-1
• Kitchen, Sheila A.; Naragon, Thomas H.; et al. (2024) The genomic and cellular basis of biosynthetic innovation in rove beetles; Cell; Vol. 187; No. 14; 1-22; 10.1016/j.cell.2024.05.012
• Treidel, Lisa A.; Deem, Kevin D.; et al. (2024) Insect Flight: State of the Field and Future Directions; Integrative And Comparative Biology; icae106; 10.1093/icb/icae106
• Hanley, Deirdre; Li, Zi-Qi; et al. (2024) Stereospecific Enzymatic Conversion of Boronic Acids to Amines; Journal of the American Chemical Society; 10.1021/jacs.4c04190
• Zhang, Oumeng; Dahlquist, Nic; et al. (2024) Long-term imaging of three-dimensional hyphal development using the ePetri dish; Biomedical Optics Express; Vol. 15; No. 7; 4292-4299; 10.1364/boe.530483
• Tseropoulos, Georgios; Mehrotra, Pihu; et al. (2024) Immobilized NRG1 Accelerates Neural Crest like Cell Differentiation Toward Functional Schwann Cells Through Sustained Erk1/2 Activation and YAP/TAZ Nuclear Translocation; Advanced Science; 2402607; 10.1002/advs.202402607
• Yin, Siyuan; Cao, Ruizhi; et al. (2024) Can deep neural networks work with amplitude and phase input of defocused images?; Optics Express; Vol. 32; No. 14; 25036-25045; 10.1364/oe.527986
• Lamorie-Foote, Krista; Kramer, Daniel R.; et al. (2024) Primary somatosensory cortex organization for engineering artificial somatosensation; Neuroscience Research; Vol. 204; 1-13; 10.1016/j.neures.2024.01.005
• Lesser, Ellen; Azevedo, Anthony W.; et al. (2024) Synaptic architecture of leg and wing premotor control networks in Drosophila; Nature; 10.1038/s41586-024-07600-z
• Azevedo, Anthony; Lesser, Ellen; et al. (2024) Connectomic reconstruction of a female Drosophila ventral nerve cord; Nature; 10.1038/s41586-024-07389-x
• Cervantes Rincón, Tomás; Kapoor, Tania; et al. (2024) Human antibodies in Mexico and Brazil neutralizing tick-borne flaviviruses; Cell Reports; Vol. 43; No. 6; 114298; 10.1016/j.celrep.2024.114298
• Han, Yanting and Adolphs, Ralph (2024) A shared structure for emotion experiences from narratives, videos and everyday life; iScience; 110378; 10.1016/j.isci.2024.110378
• Sperling, Alexis L.; Fabian, Daniel K.; et al. (2024) Protocol for preparing Drosophila genomic DNA to create chromosome-level de novo genome assemblies; STAR Protocols; Vol. 5; No. 2; 102974; PMCID PMC11002874; 10.1016/j.xpro.2024.102974
• Tan, Chieh-Hsiang; Wang, Ting-Yu; et al. (2024) Single-tissue proteomics in Caenorhabditis elegans reveals proteins resident in intestinal lysosome-related organelles; Proceedings of the National Academy of Sciences; Vol. 121; No. 25; 10.1073/pnas.2322588121
• Wang, Renée Z.; Lonergan, Zachery R.; et al. (2024) Widespread detoxifying NO reductases impart a distinct isotopic fingerprint on N₂O under anoxia; Proceedings of the National Academy of Sciences; Vol. 121; No. 25; e2319960121; 10.1073/pnas.2319960121
• Oberhofer, Georg; Johnson, Michelle L.; et al. (2024) Cleave and Rescue gamete killers create conditions for gene drive in plants; Nature Plants; 10.1038/s41477-024-01701-3
• Malet, Karim; Faure, Emmanuel; et al. (2024) Intracellular Pseudomonas aeruginosa within the Airway Epithelium of Cystic Fibrosis Lung Tissues; American Journal of Respiratory and Critical Care Medicine; Vol. 209; No. 12; 1453-1462; 10.1164/rccm.202308-1451oc
• Sullivan, Delaney K. and Pachter, Lior (2024) Flexible parsing, interpretation, and editing of technical sequences with splitcode; Bioinformatics; Vol. 40; No. 6; btae331; PMCID PMC11193061; 10.1093/bioinformatics/btae331
• Zernicka-Goetz, Magdalena and Hyun, Insoo (2024) Embryo models need consistent ethical oversight; Nature; Vol. 630; No. 8016; 305; 10.1038/d41586-024-01728-8
• Dorff, Tanya B.; Blanchard, M. Suzette; et al. (2024) PSCA-CAR T cell therapy in metastatic castration-resistant prostate cancer: a phase 1 trial; Nature Medicine; 10.1038/s41591-024-02979-8
• Pardo-Palacios, Francisco J.; Wang, Dingjie; et al. (2024) Systematic assessment of long-read RNA-seq methods for transcript identification and quantification; Nature Methods; 10.1038/s41592-024-02298-3
• Huycke, Tyler R.; Häkkinen, Teemu J.; et al. (2024) Patterning and folding of intestinal villi by active mesenchymal dewetting; Cell; Vol. 187; No. 12; 3072-3089.e20; 10.1016/j.cell.2024.04.039
• Huang, Biao; Zeng, Zipeng; et al. (2024) Long-term expandable mouse and human-induced nephron progenitor cells enable kidney organoid maturation and modeling of plasticity and disease; Cell Stem Cell; Vol. 31; No. 6; 921-939.e17; 10.1016/j.stem.2024.04.002
• Pang, Marion; Jones, Jeff J.; et al. (2024) Increasing Proteome Coverage Through a Reduction in Analyte Complexity in Single-Cell Equivalent Samples; Journal of Proteome Research; 10.1021/acs.jproteome.4c00062
• Cao, Ruizhi; Shen, Cheng; et al. (2024) High-resolution, large field-of-view label-free imaging via aberration-corrected, closed-form complex field reconstruction; Nature Communications; Vol. 15; 4713; PMCID PMC11148160; 10.1038/s41467-024-49126-y
• Kim, Jane H.; Dong, Julianna; et al. (2024) Pseudomonas aeruginosa Activates Quorum Sensing, Antioxidant Enzymes and Type VI Secretion in Response to Oxidative Stress to Initiate Biofilm Formation and Wound Chronicity; Antioxidants; Vol. 13; No. 6; 655; PMCID PMC11200925; 10.3390/antiox13060655
• Rangone, Hélène; Bond, Laura; et al. (2024) Greatwall-Endos-PP2A/B55ᵀʷᶦⁿˢ network regulates translation and stability of maternal transcripts in the Drosophila oocyte-to-embryo transition; Open Biology; Vol. 14; No. 6; 240065; 10.1098/rsob.240065
• Yang, Liu; Lawhorn, Susannah; et al. (2024) Bacterial growth dynamics in a rhythmic symbiosis; Molecular Biology of the Cell; Vol. 35; No. 6; ar79; 10.1091/mbc.e24-01-0044
• Sierra, Noemie; Olsman, Noah; et al. (2024) A novel approach to comparative RNA-Seq does not support a conserved set of orthologs underlying animal regeneration; Genome Biology and Evolution; Vol. 16; No. 6; evae120; PMCID PMC11214158; 10.1093/gbe/evae120
• Lo, Yu-Li; Li, Ching-Yao; et al. (2024) Exploring in vivo combinatorial chemo-immunotherapy: Addressing p97 suppression and immune reinvigoration in pancreatic cancer with tumor microenvironment-responsive nanoformulation; Biomedicine & Pharmacotherapy; Vol. 175; 116660; 10.1016/j.biopha.2024.116660
• Rabut, Claire; Norman, Sumner L.; et al. (2024) Functional ultrasound imaging of human brain activity through an acoustically transparent cranial window; Science Translational Medicine; Vol. 16; No. 749; eadj3143; 10.1126/scitranslmed.adj3143
• Panda, Pallavi; Ladinsky, Mark S.; et al. (2024) 9-fold symmetry is not essential for centriole elongation and formation of new centriole-like structures; Nature Communications; Vol. 15; 4467; PMCID PMC11127918; 10.1038/s41467-024-48831-y
• Zhu, Meng; Meglicki, Maciej; et al. (2024) Tead4 and Tfap2c generate bipotency and a bistable switch in totipotent embryos to promote robust lineage diversification; Nature Structural & Molecular Biology; 10.1038/s41594-024-01311-9
• Xia, Shiyu; Lu, Andrew C.; et al. (2024) Synthetic protein circuits for programmable control of mammalian cell death; Cell; Vol. 187; No. 11; 2785-2800.e16; PMCID PMC11127782; 10.1016/j.cell.2024.03.031
• Junyent, Sergi; Meglicki, Maciej; et al. (2024) The first two blastomeres contribute unequally to the human embryo; Cell; Vol. 187; No. 11; 2838-2854.e17; 10.1016/j.cell.2024.04.029
• Neumann, Adam P.; Sage, Eric; et al. (2024) A Hybrid Orbitrap‐Nanoelectromechanical Systems Approach to Analysis of Individual, Intact Proteins in Real Time; Angewandte Chemie International Edition; e202317064; 10.1002/anie.202317064
• Bou Daher, Firas; Serra, Leo; et al. (2024) Xyloglucan deficiency leads to a reduction in turgor pressure and changes in cell wall properties, affecting early seedling establishment; Current Biology; Vol. 34; No. 10; 2094-2106.e6; PMCID PMC11111339; 10.1016/j.cub.2024.04.016
• Castellaneta, Andrea; Losito, Ilario; et al. (2024) Lipidomics reveals the reshaping of the mitochondrial phospholipid profile in cells lacking OPA1 and Mitofusins; Journal of Lipid Research; 100563; 10.1016/j.jlr.2024.100563
• Sun, Jingjing; Durmaz, Ayse Damla; et al. (2024) Two sequential gene expression programs bridged by cell division support long-distance collective cell migration; Development; Vol. 151; No. 10; dev202262; PMCID PMC11165717; 10.1242/dev.202262
• Laubscher, Emily; Wang, Xuefei (Julie); et al. (2024) Accurate single-molecule spot detection for image-based spatial transcriptomics with weakly supervised deep learning; Cell Systems; Vol. 15; No. 5; 475-482.e6; 10.1016/j.cels.2024.04.006
• Almhjell, Patrick J.; Johnston, Kadina E.; et al. (2024) The β-subunit of tryptophan synthase is a latent tyrosine synthase; Nature Chemical Biology; 10.1038/s41589-024-01619-z
• She, Liang; Benna, Marcus K.; et al. (2024) Temporal multiplexing of perception and memory codes in IT cortex; Nature; Vol. 629; No. 8013; 861-868
• Bosch, Thomas C. G.; Wigley, Mark; et al. (2024) The potential importance of the built-environment microbiome and its impact on human health; Proceedings of the National Academy of Sciences; Vol. 121; No. 20; e2313971121; PMCID PMC11098107; 10.1073/pnas.2313971121
• Wandelt, Sarah K.; Bjånes, David A.; et al. (2024) Representation of internal speech by single neurons in human supramarginal gyrus; Nature Human Behaviour; 10.1038/s41562-024-01867-y
• Bhat, Prashant; Chow, Amy; et al. (2024) Genome organization around nuclear speckles drives mRNA splicing efficiency; Nature; 10.1038/s41586-024-07429-6
• Hills, Rory A.; Tan, Tiong Kit; et al. (2024) Proactive vaccination using multiviral Quartet Nanocages to elicit broad anti-coronavirus responses; Nature Nanotechnology; 10.1038/s41565-024-01655-9
• Bosch, Thomas C. G.; Blaser, Martin J.; et al. (2024) A new lexicon in the age of microbiome research; Philosophical Transactions of the Royal Society B: Biological Sciences; Vol. 379; No. 1901; 20230060; PMCID PMC10945402; 10.1098/rstb.2023.0060
• Yamashita, Shun-ichi; Sugiura, Yuki; et al. (2024) Mitophagy mediated by BNIP3 and NIX protects against ferroptosis by downregulating mitochondrial reactive oxygen species; Cell Death & Differentiation; Vol. 31; No. 5; 651-661; PMCID PMC11094013; 10.1038/s41418-024-01280-y
• Tsypin, Lev M. Z.; Saunders, Scott H.; et al. (2024) Genetically dissecting the electron transport chain of a soil bacterium reveals a generalizable mechanism for biological phenazine-1-carboxylic acid oxidation; PLOS Genetics; 1011064; 10.1371/journal.pgen.1011064
• Aghilinejad, Arian and Gharib, Morteza (2024) Assessing pressure wave components for aortic stiffness monitoring through spectral regression learning; European Heart Journal Open; Vol. 4; No. 3; oeae040; PMCID PMC11165314; 10.1093/ehjopen/oeae040
• Aleksander, Suzanne A.; Anagnostopoulos, Anna V.; et al. (2024) Updates to the Alliance of Genome Resources central infrastructure; Genetics; Vol. 227; No. 1; iyae049; PMCID PMC11075569; 10.1093/genetics/iyae049
• Shadkhoo, Shahriar and Thomson, Matt (2024) Theoretical limits of energy extraction in active fluids; Physical Review Research; Vol. 6; No. 2; 23195; 10.1103/physrevresearch.6.023195
• Sato, Nanami; Rosa, Viviane S.; et al. (2024) Basal delamination during mouse gastrulation primes pluripotent cells for differentiation; Developmental Cell; Vol. 59; No. 10; 1252-1268.e13; 10.1016/j.devcel.2024.03.008
• Sternberg, Paul W.; Van Auken, Kimberly; et al. (2024) WormBase 2024: status and transitioning to Alliance infrastructure; Genetics; Vol. 227; No. 1; iyae050; PMCID PMC11075546; 10.1093/genetics/iyae050
• Wright, Adam; Wilkinson, Mark D.; et al. (2024) FAIR Header Reference genome: a TRUSTworthy standard; Briefings in Bioinformatics; Vol. 25; No. 3; bbae122; PMCID PMC10981671; 10.1093/bib/bbae122
• Wang, Bo; Torok, Zsofia; et al. (2024) Unsupervised restoration of a complex learned behavior after large-scale neuronal perturbation; Nature Neuroscience; 10.1038/s41593-024-01630-6
• Ross, Karen E.; Bastian, Frederic B.; et al. (2024) Perspectives on tracking data reuse across biodata resources; Bioinformatics Advances; Vol. 4; vbae057; PMCID PMC11076920; 10.1093/bioadv/vbae057
• Kim, Na Yeon; He, Junfeng; et al. (2024) Smartphone‐based gaze estimation for in‐home autism research; Autism Research; 10.1002/aur.3140
• Husar, Adam; Ordyan, Mariam; et al. (2024) MCell4 with BioNetGen: A Monte Carlo simulator of rule-based reaction-diffusion systems with Python interface; PLoS Computational Biology; 10.1371/journal.pcbi.1011800
• Griffiths, Jessica A.; Yoo, Bryan B.; et al. (2024) Peripheral neuronal activation shapes the microbiome and alters gut physiology; Cell Reports; Vol. 43; No. 4; 113953; PMCID PMC11132177; 10.1016/j.celrep.2024.113953
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