COVID-19

Papers about COVID-19 research at Caltech

Monographs from CaltechAUTHORS

• Cohen, Alexander A.; van Doremalen, Neeltje; et el. (2023) Mosaic RBD nanoparticles protect against multiple sarbecovirus challenges in animal models; PMCID PMC8978945; 10.1101/2022.03.25.485875
• Schulte, Samuel J.; Huang, Jining; et el. (2023) HCR Lateral Flow Assays for Amplified Instrument-Free At-Home SARS-CoV-2 Testing; 10.1101/2022.09.18.508442
• Braet, Sean M.; Buckley, Theresa S. C.; et el. (2023) Timeline of changes in spike conformational dynamics in emergent SARS-CoV-2 variants reveal progressive stabilization of trimer stalk and enhanced NTD dynamics; 10.1101/2022.08.26.505369
• Zvyagin, Maxim; Brace, Alexander; et el. (2023) GenSLMs: Genome-scale language models reveal SARS-CoV-2 evolutionary dynamics; PMCID PMC9709791; 10.1101/2022.10.10.511571
• Hills, Rory A.; Tan, Tiong Kit; et el. (2023) Multiviral Quartet Nanocages Elicit Broad Anti-Coronavirus Responses for Proactive Vaccinology; PMCID PMC9980174; 10.1101/2023.02.24.529520
• Hoffmann, Magnus A. G.; Yang, Zhi; et el. (2023) ESCRT recruitment to mRNA-encoded SARS-CoV-2 spike induces virus-like particles and enhanced antibody responses; PMCID PMC9810232; 10.1101/2022.12.26.521940
• Ji, Jenny; Winnett, Alexander Viloria; et el. (2023) Index Cases First Identified by Nasal-Swab Rapid COVID-19 Tests Had More Transmission to Household Contacts Than Cases Identified by Other Test Types; 10.1101/2023.03.09.23286855
• Wang, Zichao; Nie, Weili; et el. (2022) Retrieval-based Controllable Molecule Generation; 10.48550/arXiv.2208.11126
• Kim, Soo-Kyung; Suebka, Sartanee; et el. (2022) Prediction and experimental validation of drug candidates that bind specifically to the SARS-CoV-2 receptor-binding domain to prevent entry via Angiotensin-converting enzyme 2 (ACE2); 10.26434/chemrxiv-2022-nrhzz
• Harris-Lovett, Sasha; Nelson, Kara; et el. (2022) Wastewater surveillance for SARS-CoV-2 on college campuses: Initial efforts, lessons learned and research needs; PMCID PMC7872386; 10.1101/2021.02.01.21250952
• Karthikeyan, Smruthi; Levy, Joshua I.; et el. (2022) Wastewater sequencing uncovers early, cryptic SARS-CoV-2 variant transmission; PMCID PMC8996633; 10.1101/2021.12.21.21268143
• Knyazev, Sergey; Chhugani, Karishma; et el. (2022) Unlocking capacities of viral genomics for the COVID-19 pandemic response; PMCID PMC8095210; 10.48550/arXiv.2104.14005
• Winnett, Alexander Viloria; Akana, Reid; et el. (2022) Extreme differences in SARS-CoV-2 viral loads among respiratory specimen types during presumed pre-infectious and infectious periods; 10.1101/2022.07.13.22277113
• Winnett, Alexander Viloria; Akana, Reid; et el. (2022) Why Daily SARS-CoV-2 Nasal Rapid Antigen Testing Poorly Detects Infected and Infectious Individuals; 10.1101/2022.07.13.22277513
• Winnett, Alexander Viloria; Porter, Michael K.; et el. (2022) Morning SARS-CoV-2 testing yields better detection of infection due to higher viral loads in saliva and nasal swabs upon waking; 10.1101/2022.03.02.22271724
• Nguyen, Minhphuong; Paul, Eric; et el. (2022) Risk of COVID-19 Reinfection and Vaccine Breakthrough Infection, Madera County, California, 2021; 10.1101/2022.01.22.22269105
• Dommer, Abigail; Casalino, Lorenzo; et el. (2021) #COVIDisAirborne: AI-Enabled Multiscale Computational Microscopy of Delta SARS-CoV-2 in a Respiratory Aerosol; PMCID PMC8609898; 10.1101/2021.11.12.468428
• Fielding-Miller, Rebecca; Karthikeyan, Smruthi; et el. (2021) Wastewater and surface monitoring to detect COVID-19 in elementary school settings: The Safer at School Early Alert project; PMCID PMC8547528; 10.1101/2021.10.19.21265226
• Trifan, Anda; Gorgun, Defne; et el. (2021) Intelligent Resolution: Integrating Cryo-EM with AI-driven Multi-resolution Simulations to Observe the SARS-CoV-2 Replication-Transcription Machinery in Action; 10.1101/2021.10.09.463779
• Rusch, Tessa; Han, Yanting; et el. (2021) COVID-Dynamic: A large-scale multifaceted longitudinal study of socioemotional and behavioral change across the pandemic; 10.31234/osf.io/75eyx
• Green, Sydnee A.; Wigman, Benjamin; et el. (2021) Chemocatalytic Amplification Probes Enable Transcriptionally-Regulated Au(I)-Catalysis in E. coli and Sensitive Detection of SARS-CoV-2 RNA Fragments; 10.26434/chemrxiv.12915761.v2
• Garza-López, Roberto A.; Kozak, John J.; et el. (2021) Copper(II) Inhibition of the SARS-CoV-2 Main Protease; PMCID PMC7668746; 10.26434/chemrxiv.12673436.v1
• Sarma, Anish A.; Sarma, Aartik; et el. (2021) Control-theoretic immune tradeoffs explain SARS-CoV-2 virulence and transmission variation; 10.1101/2021.04.25.441372
• Toubat, Omar; Berg, Anders H.; et el. (2021) Manufacturer Signal-to-Cutoff Threshold Underestimates Cumulative Incidence of SARS-CoV-2 Infection: Evidence from the Los Angeles Firefighters Study; 10.1101/2021.04.20.21255829
• Muecksch, Frauke; Weisblum, Yiska; et el. (2021) Development of potency, breadth and resilience to viral escape mutations in SARS-CoV-2 neutralizing antibodies; PMCID PMC7987023; 10.1101/2021.03.07.434227
• Yurk, Dominic and Abu-Mostafa, Yaser (2021) County-Specific, Real-Time Projection of the Effect of Business Closures on the COVID-19 Pandemic; 10.1101/2021.02.10.21251533
• Ghaffarizadeh, S. Aryan; Ghaffarizadeh, S. Arman; et el. (2021) Life and Work of Researchers Trapped in the COVID-19 Pandemic Vicious Cycle; 10.1101/2021.02.02.429476
• Winnett, Alexander; Cooper, Matthew M.; et el. (2020) SARS-CoV-2 Viral Load in Saliva Rises Gradually and to Moderate Levels in Some Humans; PMCID PMC7743094; 10.1101/2020.12.09.20239467
• Flynn, Michael J.; Snitser, Olga; et el. (2020) A simple direct RT-LAMP SARS-CoV-2 saliva diagnostic; 10.1101/2020.11.19.20234948
• Chour, William; Xu, Alexander M.; et el. (2020) Shared Antigen-specific CD8⁺ T cell Responses Against the SARS-COV-2 Spike Protein in HLA A*02:01 COVID-19 Participants; 10.1101/2020.05.04.20085779
• Xu, Rong; Lu, Renfei; et el. (2020) Temporal dynamics of human respiratory and gut microbiomes during the course of COVID-19 in adults; 10.1101/2020.07.21.20158758
• Brogan, Daniel J.; Chaverra-Rodriguez, Duverney; et el. (2020) A Sensitive, Rapid, and Portable CasRx-based Diagnostic Assay for SARS-CoV-2; PMCID PMC7587836; 10.1101/2020.10.14.20212795
• Nazeeri, Albert I.; Hilburn, Isaac A.; et el. (2020) Ethanol-Drying Regeneration of N95 Respirators; 10.1101/2020.04.12.20059709
• Barnes, Christopher O.; Jette, Claudia A.; et el. (2020) Structural classification of neutralizing antibodies against the SARS-CoV-2 spike receptor-binding domain suggests vaccine and therapeutic strategies; 10.1101/2020.08.30.273920
• Booeshaghi, A. Sina; Tan, Fayth; et el. (2020) Markedly heterogeneous COVID-19 testing plans among US colleges and universities; 10.1101/2020.08.09.20171223
• Cohen, Bruce N.; Nichols, Aaron L.; et el. (2020) Successful Cessation Programs that Reduce Comorbidity May Explain Surprisingly Low Smoking Rates Among Hospitalized COVID-19 Patients; 10.32388/WURFH0
• Jue, Erik and Ismagilov, Rustem F. (2020) Commercial stocks of SARS-CoV-2 RNA may report low concentration values, leading to artificially increased apparent sensitivity of diagnostic assays; 10.1101/2020.04.28.20077602
• Booeshaghi, A. Sina and Pachter, Lior (2020) Decrease in ACE2 mRNA expression in aged mouse lung; 10.1101/2020.04.02.021451