<h1 id="covid-19"><a href="./">COVID-19</a></h1>
<h2 id="section">(““)</h2>
<p>Papers about COVID-19 research at Caltech</p>
<h3 id="monographs-from-caltechauthors">Monographs from <a
href="https://authors.library.caltech.edu">CaltechAUTHORS</a></h3>
<ul>
<li>Wang, Eric; Cohen, Alexander A.; et al. (2024) <a
href="https://authors.library.caltech.edu/records/t9kx7-ggz82">Designed
mosaic nanoparticles enhance cross-reactive immune responses in
mice</a>; PMCID PMC10925254; <a
href="https://doi.org/10.1101/2024.02.28.582544">10.1101/2024.02.28.582544</a></li>
<li>Cohen, Alexander A.; Keeffe, Jennifer R.; et al. (2024) <a
href="https://authors.library.caltech.edu/records/kenyk-gey96">Mosaic
sarbecovirus vaccination elicits cross-reactive responses in
pre-immunized animals</a>; PMCID PMC10871317; <a
href="https://doi.org/10.1101/2024.02.08.576722">10.1101/2024.02.08.576722</a></li>
<li>Ji, Jenny; Winnett, Alexander Viloria; et al. (2023) <a
href="https://resolver.caltech.edu/CaltechAUTHORS:20230323-420614000.1">Index
Cases First Identified by Nasal-Swab Rapid COVID-19 Tests Had More
Transmission to Household Contacts Than Cases Identified by Other Test
Types</a>; <a
href="https://doi.org/10.1101/2023.03.09.23286855">10.1101/2023.03.09.23286855</a></li>
<li>Hills, Rory A.; Tan, Tiong Kit; et al. (2023) <a
href="https://resolver.caltech.edu/CaltechAUTHORS:20230316-182086000.11">Multiviral
Quartet Nanocages Elicit Broad Anti-Coronavirus Responses for Proactive
Vaccinology</a>; PMCID PMC9980174; <a
href="https://doi.org/10.1101/2023.02.24.529520">10.1101/2023.02.24.529520</a></li>
<li>Hoffmann, Magnus A. G.; Yang, Zhi; et al. (2022) <a
href="https://resolver.caltech.edu/CaltechAUTHORS:20230316-182651000.48">ESCRT
recruitment to mRNA-encoded SARS-CoV-2 spike induces virus-like
particles and enhanced antibody responses</a>; PMCID PMC9810232; <a
href="https://doi.org/10.1101/2022.12.26.521940">10.1101/2022.12.26.521940</a></li>
<li>Kim, Soo-Kyung; Suebka, Sartanee; et al. (2022) <a
href="https://resolver.caltech.edu/CaltechAUTHORS:20230324-284930000.4">Prediction
and experimental validation of drug candidates that bind specifically to
the SARS-CoV-2 receptor-binding domain to prevent entry via
Angiotensin-converting enzyme 2 (ACE2)</a>; <a
href="https://doi.org/10.26434/chemrxiv-2022-nrhzz">10.26434/chemrxiv-2022-nrhzz</a></li>
<li>Zvyagin, Maxim; Brace, Alexander; et al. (2022) <a
href="https://resolver.caltech.edu/CaltechAUTHORS:20230322-101633000.20">GenSLMs:
Genome-scale language models reveal SARS-CoV-2 evolutionary
dynamics</a>; PMCID PMC9709791; <a
href="https://doi.org/10.1101/2022.10.10.511571">10.1101/2022.10.10.511571</a></li>
<li>Schulte, Samuel J.; Huang, Jining; et al. (2022) <a
href="https://resolver.caltech.edu/CaltechAUTHORS:20230322-367067000.13">HCR
Lateral Flow Assays for Amplified Instrument-Free At-Home SARS-CoV-2
Testing</a>; <a
href="https://doi.org/10.1101/2022.09.18.508442">10.1101/2022.09.18.508442</a></li>
<li>Braet, Sean M.; Buckley, Theresa S. C.; et al. (2022) <a
href="https://resolver.caltech.edu/CaltechAUTHORS:20230322-368453000.40">Timeline
of changes in spike conformational dynamics in emergent SARS-CoV-2
variants reveal progressive stabilization of trimer stalk and enhanced
NTD dynamics</a>; <a
href="https://doi.org/10.1101/2022.08.26.505369">10.1101/2022.08.26.505369</a></li>
<li>Wang, Zichao; Nie, Weili; et al. (2022) <a
href="https://resolver.caltech.edu/CaltechAUTHORS:20221221-004642358">Retrieval-based
Controllable Molecule Generation</a>; <a
href="https://doi.org/10.48550/arXiv.2208.11126">10.48550/arXiv.2208.11126</a></li>
<li>Winnett, Alexander Viloria; Akana, Reid; et al. (2022) <a
href="https://resolver.caltech.edu/CaltechAUTHORS:20220720-917093000">Why
Daily SARS-CoV-2 Nasal Rapid Antigen Testing Poorly Detects Infected and
Infectious Individuals</a>; <a
href="https://doi.org/10.1101/2022.07.13.22277513">10.1101/2022.07.13.22277513</a></li>
<li>Winnett, Alexander Viloria; Akana, Reid; et al. (2022) <a
href="https://resolver.caltech.edu/CaltechAUTHORS:20220720-917402000">Extreme
differences in SARS-CoV-2 viral loads among respiratory specimen types
during presumed pre-infectious and infectious periods</a>; <a
href="https://doi.org/10.1101/2022.07.13.22277113">10.1101/2022.07.13.22277113</a></li>
<li>Cohen, Alexander A.; van Doremalen, Neeltje; et al. (2022) <a
href="https://resolver.caltech.edu/CaltechAUTHORS:20231006-213721063">Mosaic
RBD nanoparticles protect against multiple sarbecovirus challenges in
animal models</a>; PMCID PMC8978945; <a
href="https://doi.org/10.1101/2022.03.25.485875">10.1101/2022.03.25.485875</a></li>
<li>Winnett, Alexander Viloria; Porter, Michael K.; et al. (2022) <a
href="https://resolver.caltech.edu/CaltechAUTHORS:20220307-188444000">Morning
SARS-CoV-2 testing yields better detection of infection due to higher
viral loads in saliva and nasal swabs upon waking</a>; <a
href="https://doi.org/10.1101/2022.03.02.22271724">10.1101/2022.03.02.22271724</a></li>
<li>Nguyen, Minhphuong; Paul, Eric; et al. (2022) <a
href="https://resolver.caltech.edu/CaltechAUTHORS:20220124-214548000">Risk
of COVID-19 Reinfection and Vaccine Breakthrough Infection, Madera
County, California, 2021</a>; <a
href="https://doi.org/10.1101/2022.01.22.22269105">10.1101/2022.01.22.22269105</a></li>
<li>Karthikeyan, Smruthi; Levy, Joshua I.; et al. (2021) <a
href="https://resolver.caltech.edu/CaltechAUTHORS:20221215-540121000.6">Wastewater
sequencing uncovers early, cryptic SARS-CoV-2 variant transmission</a>;
PMCID PMC8996633; <a
href="https://doi.org/10.1101/2021.12.21.21268143">10.1101/2021.12.21.21268143</a></li>
<li>Dommer, Abigail; Casalino, Lorenzo; et al. (2021) <a
href="https://resolver.caltech.edu/CaltechAUTHORS:20220208-947187000">#COVIDisAirborne:
AI-Enabled Multiscale Computational Microscopy of Delta SARS-CoV-2 in a
Respiratory Aerosol</a>; PMCID PMC8609898; <a
href="https://doi.org/10.1101/2021.11.12.468428">10.1101/2021.11.12.468428</a></li>
<li>Fielding-Miller, Rebecca; Karthikeyan, Smruthi; et al. (2021) <a
href="https://resolver.caltech.edu/CaltechAUTHORS:20221215-540378000.16">Wastewater
and surface monitoring to detect COVID-19 in elementary school settings:
The Safer at School Early Alert project</a>; PMCID PMC8547528; <a
href="https://doi.org/10.1101/2021.10.19.21265226">10.1101/2021.10.19.21265226</a></li>
<li>Trifan, Anda; Gorgun, Defne; et al. (2021) <a
href="https://resolver.caltech.edu/CaltechAUTHORS:20211015-222208091">Intelligent
Resolution: Integrating Cryo-EM with AI-driven Multi-resolution
Simulations to Observe the SARS-CoV-2 Replication-Transcription
Machinery in Action</a>; <a
href="https://doi.org/10.1101/2021.10.09.463779">10.1101/2021.10.09.463779</a></li>
<li>Knyazev, Sergey; Chhugani, Karishma; et al. (2021) <a
href="https://resolver.caltech.edu/CaltechAUTHORS:20221215-185439493">Unlocking
capacities of viral genomics for the COVID-19 pandemic response</a>;
PMCID PMC8095210; <a
href="https://doi.org/10.48550/arXiv.2104.14005">10.48550/arXiv.2104.14005</a></li>
<li>Sarma, Anish A.; Sarma, Aartik; et al. (2021) <a
href="https://resolver.caltech.edu/CaltechAUTHORS:20210429-095332336">Control-theoretic
immune tradeoffs explain SARS-CoV-2 virulence and transmission
variation</a>; <a
href="https://doi.org/10.1101/2021.04.25.441372">10.1101/2021.04.25.441372</a></li>
<li>Toubat, Omar; Berg, Anders H.; et al. (2021) <a
href="https://resolver.caltech.edu/CaltechAUTHORS:20210428-092309187">Manufacturer
Signal-to-Cutoff Threshold Underestimates Cumulative Incidence of
SARS-CoV-2 Infection: Evidence from the Los Angeles Firefighters
Study</a>; <a
href="https://doi.org/10.1101/2021.04.20.21255829">10.1101/2021.04.20.21255829</a></li>
<li>Muecksch, Frauke; Weisblum, Yiska; et al. (2021) <a
href="https://resolver.caltech.edu/CaltechAUTHORS:20210310-101010448">Development
of potency, breadth and resilience to viral escape mutations in
SARS-CoV-2 neutralizing antibodies</a>; PMCID PMC7987023; <a
href="https://doi.org/10.1101/2021.03.07.434227">10.1101/2021.03.07.434227</a></li>
<li>Rusch, Tessa; Han, Yanting; et al. (2021) <a
href="https://resolver.caltech.edu/CaltechAUTHORS:20211008-224631657">COVID-Dynamic:
A large-scale multifaceted longitudinal study of socioemotional and
behavioral change across the pandemic</a>; <a
href="https://doi.org/10.31234/osf.io/75eyx">10.31234/osf.io/75eyx</a></li>
<li>Yurk, Dominic and Abu-Mostafa, Yaser (2021) <a
href="https://resolver.caltech.edu/CaltechAUTHORS:20210212-100829452">County-Specific,
Real-Time Projection of the Effect of Business Closures on the COVID-19
Pandemic</a>; <a
href="https://doi.org/10.1101/2021.02.10.21251533">10.1101/2021.02.10.21251533</a></li>
<li>Ghaffarizadeh, S. Aryan; Ghaffarizadeh, S. Arman; et al. (2021) <a
href="https://resolver.caltech.edu/CaltechAUTHORS:20210203-144656191">Life
and Work of Researchers Trapped in the COVID-19 Pandemic Vicious
Cycle</a>; <a
href="https://doi.org/10.1101/2021.02.02.429476">10.1101/2021.02.02.429476</a></li>
<li>Harris-Lovett, Sasha; Nelson, Kara; et al. (2021) <a
href="https://resolver.caltech.edu/CaltechAUTHORS:20221215-540238000.11">Wastewater
surveillance for SARS-CoV-2 on college campuses: Initial efforts,
lessons learned and research needs</a>; PMCID PMC7872386; <a
href="https://doi.org/10.1101/2021.02.01.21250952">10.1101/2021.02.01.21250952</a></li>
<li>Winnett, Alexander; Cooper, Matthew M.; et al. (2020) <a
href="https://resolver.caltech.edu/CaltechAUTHORS:20201211-113537700">SARS-CoV-2
Viral Load in Saliva Rises Gradually and to Moderate Levels in Some
Humans</a>; PMCID PMC7743094; <a
href="https://doi.org/10.1101/2020.12.09.20239467">10.1101/2020.12.09.20239467</a></li>
<li>Flynn, Michael J.; Snitser, Olga; et al. (2020) <a
href="https://resolver.caltech.edu/CaltechAUTHORS:20201123-140413855">A
simple direct RT-LAMP SARS-CoV-2 saliva diagnostic</a>; <a
href="https://doi.org/10.1101/2020.11.19.20234948">10.1101/2020.11.19.20234948</a></li>
<li>Brogan, Daniel J.; Chaverra-Rodriguez, Duverney; et al. (2020) <a
href="https://resolver.caltech.edu/CaltechAUTHORS:20201119-093121134">A
Sensitive, Rapid, and Portable CasRx-based Diagnostic Assay for
SARS-CoV-2</a>; PMCID PMC7587836; <a
href="https://doi.org/10.1101/2020.10.14.20212795">10.1101/2020.10.14.20212795</a></li>
<li>Green, Sydnee A.; Wigman, Benjamin; et al. (2020) <a
href="https://resolver.caltech.edu/CaltechAUTHORS:20210811-225351023">Chemocatalytic
Amplification Probes Enable Transcriptionally-Regulated Au(I)-Catalysis
in E. coli and Sensitive Detection of SARS-CoV-2 RNA Fragments</a>; <a
href="https://doi.org/10.26434/chemrxiv.12915761.v2">10.26434/chemrxiv.12915761.v2</a></li>
<li>Barnes, Christopher O.; Jette, Claudia A.; et al. (2020) <a
href="https://resolver.caltech.edu/CaltechAUTHORS:20200908-082702811">Structural
classification of neutralizing antibodies against the SARS-CoV-2 spike
receptor-binding domain suggests vaccine and therapeutic strategies</a>;
<a
href="https://doi.org/10.1101/2020.08.30.273920">10.1101/2020.08.30.273920</a></li>
<li>Booeshaghi, A. Sina; Tan, Fayth; et al. (2020) <a
href="https://resolver.caltech.edu/CaltechAUTHORS:20200824-142429940">Markedly
heterogeneous COVID-19 testing plans among US colleges and
universities</a>; <a
href="https://doi.org/10.1101/2020.08.09.20171223">10.1101/2020.08.09.20171223</a></li>
<li>Xu, Rong; Lu, Renfei; et al. (2020) <a
href="https://resolver.caltech.edu/CaltechAUTHORS:20201119-135010266">Temporal
dynamics of human respiratory and gut microbiomes during the course of
COVID-19 in adults</a>; <a
href="https://doi.org/10.1101/2020.07.21.20158758">10.1101/2020.07.21.20158758</a></li>
<li>Garza-López, Roberto A.; Kozak, John J.; et al. (2020) <a
href="https://resolver.caltech.edu/CaltechAUTHORS:20210629-204239084">Copper(II)
Inhibition of the SARS-CoV-2 Main Protease</a>; PMCID PMC7668746; <a
href="https://doi.org/10.26434/chemrxiv.12673436.v1">10.26434/chemrxiv.12673436.v1</a></li>
<li>Cohen, Bruce N.; Nichols, Aaron L.; et al. (2020) <a
href="https://resolver.caltech.edu/CaltechAUTHORS:20200526-135356434">Successful
Cessation Programs that Reduce Comorbidity May Explain Surprisingly Low
Smoking Rates Among Hospitalized COVID-19 Patients</a>; <a
href="https://doi.org/10.32388/WURFH0">10.32388/WURFH0</a></li>
<li>Chour, William; Xu, Alexander M.; et al. (2020) <a
href="https://resolver.caltech.edu/CaltechAUTHORS:20201120-071520503">Shared
Antigen-specific CD8⁺ T cell Responses Against the SARS-COV-2 Spike
Protein in HLA A*02:01 COVID-19 Participants</a>; <a
href="https://doi.org/10.1101/2020.05.04.20085779">10.1101/2020.05.04.20085779</a></li>
<li>Jue, Erik and Ismagilov, Rustem F. (2020) <a
href="https://resolver.caltech.edu/CaltechAUTHORS:20200519-071416134">Commercial
stocks of SARS-CoV-2 RNA may report low concentration values, leading to
artificially increased apparent sensitivity of diagnostic assays</a>; <a
href="https://doi.org/10.1101/2020.04.28.20077602">10.1101/2020.04.28.20077602</a></li>
<li>Nazeeri, Albert I.; Hilburn, Isaac A.; et al. (2020) <a
href="https://resolver.caltech.edu/CaltechAUTHORS:20201119-142640062">Ethanol-Drying
Regeneration of N95 Respirators</a>; <a
href="https://doi.org/10.1101/2020.04.12.20059709">10.1101/2020.04.12.20059709</a></li>
<li>Booeshaghi, A. Sina and Pachter, Lior (2020) <a
href="https://resolver.caltech.edu/CaltechAUTHORS:20200406-101324270">Decrease
in ACE2 mRNA expression in aged mouse lung</a>; <a
href="https://doi.org/10.1101/2020.04.02.021451">10.1101/2020.04.02.021451</a></li>
</ul>