<h1 id="covid-19"><a href="./">COVID-19</a></h1> <h2 id="section">(““)</h2> <p>Papers about COVID-19 research at Caltech</p> <h3 id="articles-from-caltechauthors">Articles from <a href="https://authors.library.caltech.edu">CaltechAUTHORS</a></h3> <ul> <li>Dedhe, Abhishek M.; Chowkase, Aakash A.; et al. (2024) <a href="https://authors.library.caltech.edu/records/eq67h-c9n23">Conventional and frugal methods of estimating COVID-19-related excess deaths and undercount factors</a>; Scientific Reports; Vol. 14; 10378; <a href="https://doi.org/10.1038/s41598-024-57634-6">10.1038/s41598-024-57634-6</a></li> <li>Kim, Soo-Kyung; Suebka, Sartanee; et al. (2024) <a href="https://authors.library.caltech.edu/records/c4r6a-mwp15">Methotrexate Inhibits the Binding of the Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Receptor Binding Domain to the Host-Cell Angiotensin-Converting Enzyme-2 (ACE-2) Receptor</a>; ACS Pharmacology & Translational Science; Vol. 7; No. 2; 348-362; PMCID PMC10863433; <a href="https://doi.org/10.1021/acsptsci.3c00197">10.1021/acsptsci.3c00197</a></li> <li>Pushpawela, Buddhi; Chea, Peter; et al. (2023) <a href="https://authors.library.caltech.edu/records/61t7s-8n884">Quantification of face seal leakage using parallel resistance model</a>; Physics of Fluids; Vol. 35; No. 12; 127127; <a href="https://doi.org/10.1063/5.0177717">10.1063/5.0177717</a></li> <li>Lin, Tuo; Karthikeyan, Smruthi; et al. (2023) <a href="https://authors.library.caltech.edu/records/tzbmb-zcx74">Optimizing campus-wide COVID-19 test notifications with interpretable wastewater time-series features using machine learning models</a>; Scientific Reports; Vol. 13; 20670; PMCID PMC10673837; <a href="https://doi.org/10.1038/s41598-023-47859-2">10.1038/s41598-023-47859-2</a></li> <li>Rouhani, Nina; Stanley, Damian; et al. (2023) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20230725-49131000.14">Collective events and individual affect shape autobiographical memory</a>; Proceedings of the National Academy of Sciences of the United States of America; Vol. 120; No. 29; Art. No. e2221919120; PMCID PMC10629560; <a href="https://doi.org/10.1073/pnas.2221919120">10.1073/pnas.2221919120</a></li> <li>Papini, Santiago; López-Castro, Teresa; et al. (2023) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20230519-1701000.17">Alcohol, cannabis, and nicotine use have distinct associations with COVID-19 pandemic-related experiences: An exploratory Bayesian network analysis across two timepoints</a>; Drug and Alcohol Dependence; Vol. 248; Art. No. 109929; PMCID PMC10186931; <a href="https://doi.org/10.1016/j.drugalcdep.2023.109929">10.1016/j.drugalcdep.2023.109929</a></li> <li>Winnett, Alexander Viloria; Akana, Reid; et al. (2023) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20230628-344482000.1">Daily SARS-CoV-2 Nasal Antigen Tests Miss Infected and Presumably Infectious People Due to Viral Load Differences among Specimen Types</a>; Microbiology Spectrum; Vol. 11; No. 4; e01295-23; PMCID PMC10434058; <a href="https://doi.org/10.1128/spectrum.01295-23">10.1128/spectrum.01295-23</a></li> <li>Hoffmann, Magnus A. G.; Yang, Zhi; et al. (2023) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20230519-1669000.14">ESCRT recruitment to SARS-CoV-2 spike induces virus-like particles that improve mRNA vaccines</a>; Cell; Vol. 186; No. 11; 2380-2391; PMCID PMC10121106; <a href="https://doi.org/10.1016/j.cell.2023.04.024">10.1016/j.cell.2023.04.024</a></li> <li>Shrock, Ellen L.; Timms, Richard T.; et al. (2023) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20230510-349443100.9">Germline-encoded amino acid–binding motifs drive immunodominant public antibody responses</a>; Science; Vol. 380; No. 6640; Art. No. eadc9498; PMCID PMC10273302; <a href="https://doi.org/10.1126/science.adc9498">10.1126/science.adc9498</a></li> <li>Xu, Yang; Yao, Yuxing; et al. (2023) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20230113-708423000.13">Magnetocontrollable droplet mobility on liquid crystal-infused porous surfaces</a>; Nano Research; Vol. 16; No. 4; 5098-5107; PMCID PMC9768411; <a href="https://doi.org/10.1007/s12274-022-5318-y">10.1007/s12274-022-5318-y</a></li> <li>Braet, Sean M.; Buckley, Theresa S. C.; et al. (2023) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20230322-393072000.2">Timeline of changes in spike conformational dynamics in emergent SARS-CoV-2 variants reveal progressive stabilization of trimer stalk with altered NTD dynamics</a>; eLife; Vol. 12; Art. No. e82584; PMCID PMC10049203; <a href="https://doi.org/10.7554/elife.82584">10.7554/elife.82584</a></li> <li>Schulte, Samuel J.; Huang, Jining; et al. (2023) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20230227-258668000.1">Hybridization Chain Reaction Lateral Flow Assays for Amplified Instrument-Free At-Home SARS-CoV-2 Testing</a>; ACS Infectious Diseases; Vol. 9; No. 3; 450-458; PMCID PMC9924079; <a href="https://doi.org/10.1021/acsinfecdis.2c00472">10.1021/acsinfecdis.2c00472</a></li> <li>Fielding-Miller, Rebecca; Karthikeyan, Smruthi; et al. (2023) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20230313-697847000.2">Safer at school early alert: an observational study of wastewater and surface monitoring to detect COVID-19 in elementary schools</a>; Lancet Regional Health - Americas; Vol. 19; Art. No. 100449; PMCID PMC9939935; <a href="https://doi.org/10.1016/j.lana.2023.100449">10.1016/j.lana.2023.100449</a></li> <li>Winnett, Alexander Viloria; Akana, Reid; et al. (2023) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20230323-759607000.4">Extreme differences in SARS-CoV-2 viral loads among respiratory specimen types during presumed pre-infectious and infectious periods</a>; PNAS Nexus; Vol. 2; No. 3; pgad033; PMCID PMC10013338; <a href="https://doi.org/10.1093/pnasnexus/pgad033">10.1093/pnasnexus/pgad033</a></li> <li>Rusch, Tessa; Han, Yanting; et al. (2023) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20230308-468102500.11">COVID-Dynamic: a large-scale longitudinal study of socioemotional and behavioral change across the pandemic</a>; Scientific Data; Vol. 10; Art. No. 71; PMCID PMC9897616; <a href="https://doi.org/10.1038/s41597-022-01901-6">10.1038/s41597-022-01901-6</a></li> <li>Sellam, Abdellah Zakaria; Benlamoudi, Azeddine; et al. (2023) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20230328-706203600.35">Deep Learning Solution for Quantification of Fluorescence Particles on a Membrane</a>; Sensors; Vol. 23; No. 4; Art. No. 1794; PMCID PMC9967937; <a href="https://doi.org/10.3390/s23041794">10.3390/s23041794</a></li> <li>López-Castro, Teresa; Papini, Santiago; et al. (2023) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20230113-708423000.15">Posttraumatic stress disorder symptom trajectories in a 16-month COVID-19 pandemic period</a>; Journal of Traumatic Stress; Vol. 36; No. 1; 180-192; PMCID PMC9880687; <a href="https://doi.org/10.1002/jts.22899">10.1002/jts.22899</a></li> <li>Carter, Alyssa M.; Winnett, Alexander Viloria; et al. (2023) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20230130-263514000.2">Laboratory Evaluation Links Some False-Positive COVID-19 Antigen Test Results Observed in a Field Study to a Specific Lot of Test Strips</a>; Open Forum Infectious Diseases; Vol. 10; No. 1; Art. No. ofac701; PMCID PMC9887260; <a href="https://doi.org/10.1093/ofid/ofac701">10.1093/ofid/ofac701</a></li> <li>Periyakoil, Divya; Periyakoil, Preethi; et al. (2023) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20230725-706050000.31">Are There Differences between the Stress Responses of Philippine Men and Women to the COVID-19 Pandemic?</a>; International Journal of Environmental Research and Public Health; Vol. 20; No. 3; Art. No. 2326; PMCID PMC9915070; <a href="https://doi.org/10.3390/ijerph20032326">10.3390/ijerph20032326</a></li> <li>Huang, Kuan-Ying A.; Chen, Xiaorui; et al. (2023) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20230719-853635200.8">Structural basis for a conserved neutralization epitope on the receptor-binding domain of SARS-CoV-2</a>; Nature Communications; Vol. 14; Art. No. 311; PMCID PMC9852238; <a href="https://doi.org/10.1038/s41467-023-35949-8">10.1038/s41467-023-35949-8</a></li> <li>Dommer, Abigail; Casalino, Lorenzo; et al. (2023) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20221017-15547800.39">#COVIDisAirborne: AI-enabled multiscale computational microscopy of delta SARS-CoV-2 in a respiratory aerosol</a>; International Journal of High Performance Computing Applications; Vol. 37; No. 1; 28-44; PMCID PMC9527558; <a href="https://doi.org/10.1177/10943420221128233">10.1177/10943420221128233</a></li> <li>Winnett, Alexander Viloria; Porter, Michael K.; et al. (2022) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20221110-430693700.10">Morning SARS-CoV-2 Testing Yields Better Detection of Infection Due to Higher Viral Loads in Saliva and Nasal Swabs upon Waking</a>; Microbiology Spectrum; Vol. 10; No. 6; e03873-22; PMCID PMC9769854; <a href="https://doi.org/10.1128/spectrum.03873-22">10.1128/spectrum.03873-22</a></li> <li>Fan, Chengcheng; Cohen, Alexander A.; et al. (2022) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20230117-369491100.9">Neutralizing monoclonal antibodies elicited by mosaic RBD nanoparticles bind conserved sarbecovirus epitopes</a>; Immunity; Vol. 55; No. 12; 2419-2435.e10; PMCID PMC9606073; <a href="https://doi.org/10.1016/j.immuni.2022.10.019">10.1016/j.immuni.2022.10.019</a></li> <li>Cable, Jennifer; Fauci, Anthony; et al. (2022) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20221017-15547800.42">Lessons from the pandemic: Responding to emerging zoonotic viral diseases — a Keystone Symposia report</a>; Annals of the New York Academy of Sciences; Vol. 1518; No. 1; 209-225; PMCID PMC9538336; <a href="https://doi.org/10.1111/nyas.14898">10.1111/nyas.14898</a></li> <li>Satta, Sandro; Shahabipour, Fahimeh; et al. (2022) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20220810-254276000">Engineering viral genomics and nano-liposomes in microfluidic platforms for patient-specific analysis of SARS-CoV-2 variants</a>; Theranostics; Vol. 12; No. 10; 4779-4790; PMCID PMC9254234; <a href="https://doi.org/10.7150/thno.72339">10.7150/thno.72339</a></li> <li>Karthikeyan, Smruthi; Levy, Joshua I.; et al. (2022) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20221215-539953000.2">Wastewater sequencing reveals early cryptic SARS-CoV-2 variant transmission</a>; Nature; Vol. 609; No. 7925; 101-108; PMCID PMC9433318; <a href="https://doi.org/10.1038/s41586-022-05049-6">10.1038/s41586-022-05049-6</a></li> <li>Ravanfar, Raheleh; Sheng, Yuling; et al. (2022) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20220603-698843600">Surface cysteines could protect the SARS-CoV-2 main protease from oxidative damage</a>; Journal of Inorganic Biochemistry; Vol. 234; Art. No. 111886; PMCID PMC9161685; <a href="https://doi.org/10.1016/j.jinorgbio.2022.111886">10.1016/j.jinorgbio.2022.111886</a></li> <li>Harrison, Neil L.; Abbott, Geoffrey W.; et al. (2022) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20220906-252586000">How many SARS-CoV-2 “viroporins” are really ion channels?</a>; Communications Biology; Vol. 5; No. 1; <a href="https://doi.org/10.1038/s42003-022-03669-2">10.1038/s42003-022-03669-2</a></li> <li>Białobrzeska, Wioleta; Ficek, Mateusz; et al. (2022) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20220412-226237000">Performance of electrochemical immunoassays for clinical diagnostics of SARS-CoV-2 based on selective nucleocapsid N protein detection: Boron-doped diamond, gold and glassy carbon evaluation</a>; Biosensors and Bioelectronics; Vol. 209; Art. No. 114222; PMCID PMC8989705; <a href="https://doi.org/10.1016/j.bios.2022.114222">10.1016/j.bios.2022.114222</a></li> <li>Cramer, Estee Y.; Huang, Yuxin; et al. (2022) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20211105-194210514">The United States COVID-19 Forecast Hub dataset</a>; Scientific Data; Vol. 9; Art. No. 462; PMCID PMC8236414; <a href="https://doi.org/10.1038/s41597-022-01517-w">10.1038/s41597-022-01517-w</a></li> <li>Schneider, Tapio; Dunbar, Oliver R. A.; et al. (2022) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20220325-220336231">Epidemic management and control through risk-dependent individual contact interventions</a>; PLoS Computational Biology; Vol. 18; No. 6; Art. No. e1010171; PMCID PMC9223336; <a href="https://doi.org/10.1371/journal.pcbi.1010171">10.1371/journal.pcbi.1010171</a></li> <li>Morales, Maryann; Ravanfar, Raheleh; et al. (2022) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20220606-736150000">Copper(II) Binding to the Intrinsically Disordered C-Terminal Peptide of SARS-CoV-2 Virulence Factor Nsp1</a>; Inorganic Chemistry; Vol. 61; No. 24; 8992-8996; PMCID PMC9195567; <a href="https://doi.org/10.1021/acs.inorgchem.2c01329">10.1021/acs.inorgchem.2c01329</a></li> <li>Hjorleifsson, Kristjan E.; Rognvaldsson, Solvi; et al. (2022) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20220228-862133400">Reconstruction of a large-scale outbreak of SARS-CoV-2 infection in Iceland informs vaccination strategies</a>; Clinical Microbiology and Infection; Vol. 28; No. 6; 852-858; PMCID PMC8849849; <a href="https://doi.org/10.1016/j.cmi.2022.02.012">10.1016/j.cmi.2022.02.012</a></li> <li>Luo, Qi; Weightman, Ryan; et al. (2022) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20220622-933053900">Optimization of vaccination for COVID-19 in the midst of a pandemic</a>; Networks and Heterogeneous Media; Vol. 17; No. 3; 443-466; <a href="https://doi.org/10.3934/nhm.2022016">10.3934/nhm.2022016</a></li> <li>Jo, HyeongChan; Kim, Juhyun; et al. (2022) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20220823-628672500.759">condLSTM-Q: A novel deep learning model for predicting COVID-19 mortality in fine geographical scale</a>; Quantitative Biology; Vol. 10; No. 2; 125-138; <a href="https://doi.org/10.15302/J-QB-021-0276">10.15302/J-QB-021-0276</a></li> <li>Jacobs, Jana L.; Bain, William; et al. (2022) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20210816-230140809">Severe Acute Respiratory Syndrome Coronavirus 2 Viremia Is Associated With Coronavirus Disease 2019 Severity and Predicts Clinical Outcome</a>; Clinical Infectious Diseases; Vol. 74; No. 9; 1525-1533; PMCID PMC9070832; <a href="https://doi.org/10.1093/cid/ciab686">10.1093/cid/ciab686</a></li> <li>Debnath, Ramit; Bardhan, Ronita; et al. (2022) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20220317-376372000">Lockdown impacts on residential electricity demand in India: A data-driven and non-intrusive load monitoring study using Gaussian mixture models</a>; Energy Policy; Vol. 164; Art. No. 112886; PMCID PMC9022708; <a href="https://doi.org/10.1016/j.enpol.2022.112886">10.1016/j.enpol.2022.112886</a></li> <li>Cable, Jennifer; Rappuoli, Rino; et al. (2022) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20220202-543652000">Innovative vaccine approaches—a Keystone Symposia report</a>; Annals of the New York Academy of Sciences; Vol. 1511; No. 1; 59-86; <a href="https://doi.org/10.1111/nyas.14739">10.1111/nyas.14739</a></li> <li>Knyazev, Sergey; Chhugani, Karishma; et al. (2022) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20221215-540336000.14">Unlocking capacities of genomics for the COVID-19 response and future pandemics</a>; Nature Methods; Vol. 19; No. 4; 374-380; PMCID PMC9467803; <a href="https://doi.org/10.1038/s41592-022-01444-z">10.1038/s41592-022-01444-z</a></li> <li>Kadakia, Shevali; Stratton, Catherine; et al. (2022) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20220411-77938600">The Accessibility of YouTube Fitness Videos for Individuals Who Are Disabled Before and During the COVID-19 Pandemic: Preliminary Application of a Text Analytics Approach</a>; JMIR Formative Research; Vol. 6; No. 2; Art. No. e34176; PMCID PMC8849230; <a href="https://doi.org/10.2196/34176">10.2196/34176</a></li> <li>Tanaka, Shiho; Olson, C. Anders; et al. (2022) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20210915-214123136">Rapid identification of neutralizing antibodies against SARS-CoV-2 variants by mRNA display</a>; Cell Reports; Vol. 38; No. 6; Art. No. 110348; PMCID PMC8769934; <a href="https://doi.org/10.1016/j.celrep.2022.110348">10.1016/j.celrep.2022.110348</a></li> <li>Pushpawela, Buddhi; Amanatidis, Stavros; et al. (2022) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20220127-913884200">Variability of the penetration of particles through facemasks</a>; Aerosol Science and Technology; Vol. 56; No. 2; 186-203; <a href="https://doi.org/10.1080/02786826.2021.2003291">10.1080/02786826.2021.2003291</a></li> <li>Savela, Emily S.; Winnett, Alexander Viloria; et al. (2022) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20210407-080559241">Quantitative SARS-CoV-2 Viral-Load Curves in Paired Saliva Samples and Nasal Swabs Inform Appropriate Respiratory Sampling Site and Analytical Test Sensitivity Required for Earliest Viral Detection</a>; Journal of Clinical Microbiology; Vol. 60; No. 2; Art. No. e01785-21; PMCID PMC8849374; <a href="https://doi.org/10.1128/JCM.01785-21">10.1128/JCM.01785-21</a></li> <li>Zhu, Yanzhe; Wu, Xunyi; et al. (2022) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20220103-231324400">Membrane-Based In-Gel Loop-Mediated Isothermal Amplification (mgLAMP) System for SARS-CoV-2 Quantification in Environmental Waters</a>; Environmental Science and Technology; Vol. 56; No. 2; 862-873; PMCID PMC8751019; <a href="https://doi.org/10.1021/acs.est.1c04623">10.1021/acs.est.1c04623</a></li> <li>Vanshylla, Kanika; Fan, Chengcheng; et al. (2022) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20211220-495801000">Discovery of ultrapotent broadly neutralizing antibodies from SARS-CoV-2 elite neutralizers</a>; Cell Host and Microbe; Vol. 30; No. 1; 69-82; PMCID PMC8683262; <a href="https://doi.org/10.1016/j.chom.2021.12.010">10.1016/j.chom.2021.12.010</a></li> <li>Gu, Alan Y.; Zhu, Yanzhe; et al. (2022) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20211209-456403000">Speech-generated aerosol settling times and viral viability can improve COVID-19 transmission prediction</a>; Environmental Science: Atmospheres; Vol. 2; No. 1; 34-45; <a href="https://doi.org/10.1039/d1ea00013f">10.1039/d1ea00013f</a></li> <li>Cao, Jian; Ramirez, Christina; et al. (2022) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20211203-174950438">The politics of vaccine hesitancy in the United States</a>; Social Science Quarterly; Vol. 103; No. 1; 42-54; <a href="https://doi.org/10.1111/ssqu.13106">10.1111/ssqu.13106</a></li> <li>McNeill, V. Faye; Corsi, Richard; et al. (2022) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20210811-170707088">Room-level ventilation in schools and universities</a>; Atmospheric Environment: X; Vol. 13; Art. No. 100152; PMCID PMC8789458; <a href="https://doi.org/10.1016/j.aeaoa.2022.100152">10.1016/j.aeaoa.2022.100152</a></li> <li>Nesterenko, Pavlo A.; McLaughlin, Jami; et al. (2021) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20211210-240628000">HLA-A∗02:01 restricted T cell receptors against the highly conserved SARS-CoV-2 polymerase cross-react with human coronaviruses</a>; Cell Reports; Vol. 37; No. 13; Art. No. 110167; PMCID PMC8660260; <a href="https://doi.org/10.1016/j.celrep.2021.110167">10.1016/j.celrep.2021.110167</a></li> <li>Linardi, Sera and Camerer, Colin (2021) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20210302-145031108">Worker-firm relational contracts in the time of shutdowns: experimental evidence</a>; Experimental Economics; Vol. 24; No. 4; 1267-1293; PMCID PMC7883973; <a href="https://doi.org/10.1007/s10683-020-09697-1">10.1007/s10683-020-09697-1</a></li> <li>Barnes, Christopher; Scheid, Johannes F.; et al. (2021) <a href="https://resolver.caltech.edu/CaltechAUTHORS:20220415-214637408">Structural insights into antibody-mediated neutralization of SARS-CoV-2</a>; Glycobiology; Vol. 31; No. 12; 1696-1697; <a href="https://doi.org/10.1093/glycob/cwab121">10.1093/glycob/cwab121</a></li> <li>Lovenduski, Nicole S.; Chatterjee, Abhishek; et al. 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